mRNA_H-paniculata_contig48587.11984.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48587.11984.1
Unique NamemRNA_H-paniculata_contig48587.11984.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48587.11984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48587contigH-paniculata_contig48587:334..712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size380
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930438.0135207-CDS-H-paniculata_contig48587:333..7111622930438.0135207-CDS-H-paniculata_contig48587:333..711Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48587 334..711 +
1691481292.236552-CDS-H-paniculata_contig48587:333..7111691481292.236552-CDS-H-paniculata_contig48587:333..711Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48587 334..711 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48587.11984.1prot_H-paniculata_contig48587.11984.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48587 334..711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48587.11984.1

>prot_H-paniculata_contig48587.11984.1 ID=prot_H-paniculata_contig48587.11984.1|Name=mRNA_H-paniculata_contig48587.11984.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
GRVGHKQTECRSGGGGQKTNQGQTTDASGQASASSRPGPGGQKWAGPTHD
KGTAVAQRTRSQGVAPRGGRGEVTATKAIFTAGEQEEFVTVQVPKRLFID
GGLGRAESVVETMVSQQAGPSMPPPQ
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mRNA from alignment at H-paniculata_contig48587:334..712+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48587.11984.1 ID=mRNA_H-paniculata_contig48587.11984.1|Name=mRNA_H-paniculata_contig48587.11984.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=379bp|location=Sequence derived from alignment at H-paniculata_contig48587:334..712+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAGGGTAGGGCACAAGCAAACAGAGTGCCGTAGTGGCGGCGGAGGCCA
GAAGACCAACCAGGGACAGACTACAGACGCGTCCGGCCAGGCATCTGCCT
CATCGCGCCCGGGACCGGGTGGTCAGAAATGGGCTGGTCCTACCCACGAC
AAGGGAACGGCGGTGGCACAGCGTACAAGAAGCCAGGGGGTGGCGCCGCG
CGGTGGACGGGGGGAAGTGACCGCCACGAAAGCCATTTTTACAGCTGGCG
AGCAGGAGGAGTTCGTCACGGTTCAGGTGCCCAAGCGATTGTTCATCGAC
GGTGGACTGGGGAGAGCCGAGTCGGTCGTCGAAACTATGGTCTCGCAGCA
GGCGGGACCGAGCATGCCGCCCCCACAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig48587:334..712+

>mRNA_H-paniculata_contig48587.11984.1 ID=mRNA_H-paniculata_contig48587.11984.1|Name=mRNA_H-paniculata_contig48587.11984.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig48587:334..712+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAGGGTAGGGCACAAGCAAACAGAGTGCCGTAGTGGCGGCGGAGGCCA
GAAGACCAACCAGGGACAGACTACAGACGCGTCCGGCCAGGCATCTGCCT
CATCGCGCCCGGGACCGGGTGGTCAGAAATGGGCTGGTCCTACCCACGAC
AAGGGAACGGCGGTGGCACAGCGTACAAGAAGCCAGGGGGTGGCGCCGCG
CGGTGGACGGGGGGAAGTGACCGCCACGAAAGCCATTTTTACAGCTGGCG
AGCAGGAGGAGTTCGTCACGGTTCAGGTGCCCAAGCGATTGTTCATCGAC
GGTGGACTGGGGAGAGCCGAGTCGGTCGTCGAAACTATGGTCTCGCAGCA
GGCGGGACCGAGCATGCCGCCCCCACAAGGCAGGGTAGGGCACAAGCAAA
CAGAGTGCCGTAGTGGCGGCGGAGGCCAGAAGACCAACCAGGGACAGACT
ACAGACGCGTCCGGCCAGGCATCTGCCTCATCGCGCCCGGGACCGGGTGG
TCAGAAATGGGCTGGTCCTACCCACGACAAGGGAACGGCGGTGGCACAGC
GTACAAGAAGCCAGGGGGTGGCGCCGCGCGGTGGACGGGGGGAAGTGACC
GCCACGAAAGCCATTTTTACAGCTGGCGAGCAGGAGGAGTTCGTCACGGT
TCAGGTGCCCAAGCGATTGTTCATCGACGGTGGACTGGGGAGAGCCGAGT
CGGTCGTCGAAACTATGGTCTCGCAGCAGGCGGGACCGAGCATGCCGCCC
CCACAA
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