mRNA_H-paniculata_contig4855.11979.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4855.11979.1
Unique NamemRNA_H-paniculata_contig4855.11979.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4855.11979.1 vs. uniprot
Match: D7FLL6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLL6_ECTSI)

HSP 1 Score: 411 bits (1057), Expect = 2.020e-139
Identity = 224/261 (85.82%), Postives = 239/261 (91.57%), Query Frame = 2 
Query:  134 MSAQ-VAPTRMALQMYKGKLVGAKKGYELLKKKSDALKARFRNIAKQIHELKQTMREDASTAFFSLTQAAQYVSGDFRGKVLDTPRPASVRCRARTDNVAGVKLPVFESYETGSETKDNIGLSGGGQKVSQCREKYKQWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEHVISYINRELDELEREDFTRLKKVVEKKREAAAKERADMDEVALAEKMA----ALAAT-----GDDTLLDDYDAQEQGDVYF 886
            MSAQ VAPTRMALQMYKGKL+GAKKGYELLKKKSDALKARFR IAKQIHELKQ MREDA+TAFFSLTQAAQYV+GDFRGKVLDTPRPA+VRCRARTDNVAGVKLPVFESYETGSE KDNIGL+GGGQKV QCR+KYK WVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRME VISYINRELDELEREDFTRLKKVVEKKREAAA+E+A  +E+A A K+     ALAA+     GDDT+LD++D QEQGDVYF
Sbjct:    1 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKREAAAREQALKNELAAANKLLETDEALAASAAVSGGDDTMLDEFDTQEQGDVYF 261
[Close]
BLAST of mRNA_H-paniculata_contig4855.11979.1 vs. uniprot
Match: A0A836CEZ0_9STRA (ATP synthase subunit D-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEZ0_9STRA)

HSP 1 Score: 339 bits (869), Expect = 3.280e-111
Identity = 178/205 (86.83%), Postives = 189/205 (92.20%), Query Frame = 2 
Query:  134 MSAQVAPTRMALQMYKGKLVGAKKGYELLKKKSDALKARFRNIAKQIHELKQTMREDASTAFFSLTQAAQYVSGDFRGKVLDTPRPASVRCRARTDNVAGVKLPVFESYETGSETKDNIGLSGGGQKVSQCREKYKQWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEHVISYINRELDELEREDFTRLKKVVEK 748
            MSAQVAPTRMAL +YKGKLVGAKKGYELLKKKSDALKARFR IAKQI+ELK+ MREDAS AFFSLTQA QY +GDFR KVLDTP PA++R R+RTDNVAGVKLP+F  Y TG E  DNIGLSGGGQKV+QCREKYKQWVENL+KLASLQTSF+TMDEALKVTNRRVNALENVTIPRME VISYINRELDELEREDFTRLKKVVEK
Sbjct:    1 MSAQVAPTRMALTLYKGKLVGAKKGYELLKKKSDALKARFRAIAKQIYELKKQMREDASMAFFSLTQA-QYAAGDFRSKVLDTPHPAAIRVRSRTDNVAGVKLPMFTPYGTGVEVHDNIGLSGGGQKVAQCREKYKQWVENLVKLASLQTSFITMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEK 204
[Close]
BLAST of mRNA_H-paniculata_contig4855.11979.1 vs. uniprot
Match: F0YKB3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKB3_AURAN)

HSP 1 Score: 265 bits (677), Expect = 2.030e-82
Identity = 151/245 (61.63%), Postives = 187/245 (76.33%), Query Frame = 2 
Query:  134 MSAQVAPTRMALQMYKGKLVGAKKGYELLKKKSDALKARFRNIAKQIHELKQTMREDASTAFFSLTQAAQYVSGDFRGKVLDTPRPASVRCRARTDNVAGVKLPVFESYETGSETKDNIGLSGGGQKVSQCREKYKQWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEHVISYINRELDELEREDFTRLKKVVEK--KREAAAKERADMDEVALAEKMAALAATGDD-TLLDDYD 859
            M+ QV PTRMALQ YKGK  GA KG++LLKKK+DALKARFR+IAK+I++ K TM E  STA+FSLT AAQY +GDF+ KVL+    ASVR   +TDN+AGVK+PVF  ++TG+E  +NIGL+GGG+K+++C+EK+   +  L+KLASLQTSFVTMDEALKVTNRRVNALENVT+PR+E  +SYI  ELDELEREDFTRLKKV ++  KR+AA            A K AA  A GD   ++ DYD
Sbjct:    1 MADQVPPTRMALQTYKGKKAGASKGHQLLKKKADALKARFRDIAKEIYKTKGTMSESCSTAYFSLT-AAQYAAGDFKTKVLEGNFVASVRVTGQTDNIAGVKIPVFRQFDTGAEHLENIGLAGGGRKIAECKEKFTNLLAVLVKLASLQTSFVTMDEALKVTNRRVNALENVTLPRIEKTLSYITSELDELEREDFTRLKKVKDQNSKRQAAQ----------AAAKKAAFYAHGDGGDIMGDYD 234
[Close]
BLAST of mRNA_H-paniculata_contig4855.11979.1 vs. uniprot
Match: A0A7S2V1A2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1A2_9STRA)

HSP 1 Score: 261 bits (668), Expect = 4.230e-81
Identity = 146/250 (58.40%), Postives = 190/250 (76.00%), Query Frame = 2 
Query:  140 AQVAPTRMALQMYKGKLVGAKKGYELLKKKSDALKARFRNIAKQIHELKQTMREDASTAFFSLTQAAQYVSGDFRGKVLD-TPRPASVRCRARTDNVAGVKLPVFESYETGSETKDNIGLSGGGQKVSQCREKYKQWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEHVISYINRELDELEREDFTRLKKVVEKKREAAAKERADMDEVALAEKMAALAATGDDTLLDDYDAQEQGDVYF 886
            A VAPTRMAL M+KGK VGAKKG+ELLKKKSDALKAR R I K+I+  K+ + + A TAFFSLTQA QY +GDFR +V+D     AS+R   R DNVAGVKLP+F  YE  +E K+N+GL+GGG+ ++ CR K+K ++ +L++L+SLQTS++TMDEALKVTNRR NALENVTIPR+E ++SYI RELDELEREDF+RLK+V  KK+E A +++ + D  +L ++MA         +L +YD  +  DVYF
Sbjct:    4 ANVAPTRMALTMFKGKRVGAKKGFELLKKKSDALKARHREIMKEIYRHKKNIADQAQTAFFSLTQA-QYAAGDFRTQVIDGCGNSASMRVHNRIDNVAGVKLPIFMEYEASTEQKENLGLAGGGRAIANCRAKFKAFLVSLVQLSSLQTSYITMDEALKVTNRRCNALENVTIPRIEGILSYIERELDELEREDFSRLKRVTSKKKEDA-EDQPEQD--SLDKEMA---------MLSNYDVADDNDVYF 240
[Close]
BLAST of mRNA_H-paniculata_contig4855.11979.1 vs. uniprot
Match: W7TG62_9STRA (H-or na-translocating f-v-type and a-type atpase (F-atpase) superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TG62_9STRA)

HSP 1 Score: 257 bits (656), Expect = 5.260e-79
Identity = 143/214 (66.82%), Postives = 165/214 (77.10%), Query Frame = 2 
Query:  140 AQVAPTRMALQMYKGKLVGAKKGYELLKKKSDALKARFRNIAKQIHELKQTMREDASTAFFSLTQAAQYVSGDFRGKVLDTPRPASVRCRARTDNVAGVKLPVFESYETGSETK-----DNIGLSGGGQKVSQCREKYKQWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEHVISYINRELDELEREDFTRLKKVVEKKREAAA 766
            A VAPTRMAL MYK K VGAKKGYELLKKKSDALK RFR+I K I   K  M +  S+AFFSLTQA QY +GDFR +VL     ASVR    TDNVAGVKLPVF  YE  SE K     DN+GL+ GG+++  C+EK+  ++ NL++LASLQTSF+T+DEALKVTNRRVNALENVTIPR+E +++YINRELDELEREDFTRLKKV   KR A A
Sbjct:    4 AIVAPTRMALTMYKTKRVGAKKGYELLKKKSDALKVRFRDIMKDIARTKGNMADQGSSAFFSLTQA-QYAAGDFRQQVLQGSLTASVRVHTHTDNVAGVKLPVFRQYELQSEVKSKSDRDNLGLAQGGRQIKACKEKFTVFLTNLVRLASLQTSFITLDEALKVTNRRVNALENVTIPRIEAILAYINRELDELEREDFTRLKKVQGSKRTAQA 216
[Close]
BLAST of mRNA_H-paniculata_contig4855.11979.1 vs. uniprot
Match: A0A0P1AP31_PLAHL (H-or na-translocating f-v-type and a-type atpase (F-atpase) superfamily n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AP31_PLAHL)

HSP 1 Score: 255 bits (652), Expect = 3.730e-78
Identity = 137/208 (65.87%), Postives = 163/208 (78.37%), Query Frame = 2 
Query:  134 MSAQVAPTRMALQMYKGKLVGAKKGYELLKKKSDALKARFRNIAKQIHELKQTMREDASTAFFSLTQAAQYVSGDFRGKVLDTPRPASVRCRARTDNVAGVKLPVFESYETGSETKDNIGLSGGGQKVSQCREKYKQWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEHVISYINRELDELEREDFTRLKKVVEKKRE 757
            MSAQVAPTRMAL  Y+GK VGAKKG+ELLKKK+DALK RF+ + ++I + K  M  +AS AFFSLTQA QY +GDFR KV+++   A +R + R DNVAGVKLPVF   E   E  +NIGL+GGG K+  CREK++  +  LIKLASLQTSFVT+DEALKVTNRRVNAL+NVTIPR+E  ISYI RELDELEREDF R+KKV   K+E
Sbjct:    1 MSAQVAPTRMALTTYRGKRVGAKKGFELLKKKADALKMRFQAMLREIQKTKLAMSTEASEAFFSLTQA-QYAAGDFRNKVIESVSTAEIRTQNRIDNVAGVKLPVFTEVEVSREKSENIGLAGGGGKIQNCREKFRVLLRALIKLASLQTSFVTLDEALKVTNRRVNALDNVTIPRIEKTISYITRELDELEREDFVRIKKVQANKQE 207
[Close]
BLAST of mRNA_H-paniculata_contig4855.11979.1 vs. uniprot
Match: M4BRW9_HYAAE (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4BRW9_HYAAE)

HSP 1 Score: 253 bits (646), Expect = 1.350e-77
Identity = 148/256 (57.81%), Postives = 180/256 (70.31%), Query Frame = 2 
Query:  137 SAQVAPTRMALQMYKGKLVGAKKGYELLKKKSDALKARFRNIAKQIHELKQTMREDASTAFFSLTQAAQYVSGDFRGKVLDTPRPASVRCRARTDNVAGVKLPVFESYETGSETKDNIGLSGGGQKVSQCREKYKQWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEHVISYINRELDELEREDFTRLKKV------VEKKREAAAKERADMDEVALAEKMAALAATGDDTLLDDYDAQEQGDVYF 886
            S QVAPTRMAL  +K K V AKKG+ELLKKK+DALK RF+ + ++I + K +M  +AS AFFSLTQA QY +GDFR KV+++   A +R + R DNVAGVKLPVF   E   E  DNIGL+GGG K+  CR K++  +  LIKLASLQTSFVT+DEALKVTNRRVNAL+NVTIPR+E+ ISYI+RELDELEREDF R+KKV      +EK  +A  KE A  +  ALAE   A     D  +L  Y+     DV F
Sbjct:    3 SVQVAPTRMALTTFKTKSVSAKKGFELLKKKADALKMRFQAMLREIQKTKMSMSTEASEAFFSLTQA-QYAAGDFRNKVIESVTTAEIRTQNRIDNVAGVKLPVFTEVEVSREKSDNIGLAGGGGKIQNCRAKFRVLLRALIKLASLQTSFVTLDEALKVTNRRVNALDNVTIPRIENTISYISRELDELEREDFVRIKKVQANKQVIEKAVQAKKKEVAAKN--ALAEDPIADVVASDHDILSQYELSADADVVF 255
[Close]
BLAST of mRNA_H-paniculata_contig4855.11979.1 vs. uniprot
Match: D0N597_PHYIT (H-or Na-translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily n=15 Tax=Phytophthora TaxID=4783 RepID=D0N597_PHYIT)

HSP 1 Score: 251 bits (642), Expect = 6.270e-77
Identity = 133/201 (66.17%), Postives = 159/201 (79.10%), Query Frame = 2 
Query:  137 SAQVAPTRMALQMYKGKLVGAKKGYELLKKKSDALKARFRNIAKQIHELKQTMREDASTAFFSLTQAAQYVSGDFRGKVLDTPRPASVRCRARTDNVAGVKLPVFESYETGSETKDNIGLSGGGQKVSQCREKYKQWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEHVISYINRELDELEREDFTRLKKV 739
            S QVAPTRMAL  +KGK VGAKKG+ELLKKK+DALK RF+ + ++I + K +M  +AS AFFSLTQA QY +GDFR KV+++   A +R + R DNVAGVKLPVF   E   E  +NIGL+GGG K+  CREK++  +  LIKLASLQTSFVT+DEALKVTNRRVNAL+NVTIPR+E  ISYI RELDELEREDF R+KKV
Sbjct:    3 SVQVAPTRMALTTFKGKRVGAKKGFELLKKKADALKMRFQAMLREIQKTKMSMSTEASEAFFSLTQA-QYAAGDFRNKVIESVSTAEIRTQNRIDNVAGVKLPVFTEVEVSREKSENIGLAGGGGKIQNCREKFRVLLRALIKLASLQTSFVTLDEALKVTNRRVNALDNVTIPRIEKTISYITRELDELEREDFVRIKKV 202
[Close]
BLAST of mRNA_H-paniculata_contig4855.11979.1 vs. uniprot
Match: A0A7S1XVP0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVP0_9STRA)

HSP 1 Score: 251 bits (640), Expect = 5.080e-76
Identity = 135/201 (67.16%), Postives = 164/201 (81.59%), Query Frame = 2 
Query:  143 QVAPTRMALQMYKGKLVGAKKGYELLKKKSDALKARFRNIAKQIHELKQTMREDASTAFFSLTQAAQYVSGDFRGKVLDTPRPASVRCRARTDNVAGVKLPVFESYET--GSETKDNIGLSGGGQKVSQCREKYKQWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEHVISYINRELDELEREDFTRLKKV 739
            QVAPTRMALQ+YKGK   A KGY+LLKKKSDALK RFR+ AK+I   K +M ED++ AFFSLTQA QY +GDF+  VL+    ASVR   RTDNVAGVKLPVF SYET  G+   +NIGL+GGG++V Q R+K+K+++  ++ LASLQTSF+T+DEALK+TNRRVNALENVTIPR+E  + YINRELDELERE+FTRLKK+
Sbjct:   61 QVAPTRMALQLYKGKREAATKGYKLLKKKSDALKVRFRDYAKKIAANKGSMAEDSAGAFFSLTQA-QYAAGDFKLAVLEGNCTASVRIHTRTDNVAGVKLPVFSSYETADGTNASENIGLAGGGRQVQQSRDKFKEFMGKMVTLASLQTSFLTLDEALKITNRRVNALENVTIPRIEATLKYINRELDELEREEFTRLKKL 260
[Close]
BLAST of mRNA_H-paniculata_contig4855.11979.1 vs. uniprot
Match: F0WQ31_9STRA (H or Na translocating Ftype putative n=2 Tax=Albugo TaxID=65356 RepID=F0WQ31_9STRA)

HSP 1 Score: 249 bits (637), Expect = 5.660e-76
Identity = 132/201 (65.67%), Postives = 159/201 (79.10%), Query Frame = 2 
Query:  137 SAQVAPTRMALQMYKGKLVGAKKGYELLKKKSDALKARFRNIAKQIHELKQTMREDASTAFFSLTQAAQYVSGDFRGKVLDTPRPASVRCRARTDNVAGVKLPVFESYETGSETKDNIGLSGGGQKVSQCREKYKQWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEHVISYINRELDELEREDFTRLKKV 739
            S QVAPTRM+L +YK K VGAKKG+ELLKKK+DALK RF+ + ++I + K  M  +A+ AFFSLTQA QY +GDFR KV+++   A +R R R DNVAGVKLPVF   E   +  DNIGLSGGG K+  CREK++  +  LIKLASLQTSF+T+DEALKVTNRRVNAL+NVTIPR+E  ISYI+RELDELEREDF R+KKV
Sbjct:    4 SVQVAPTRMSLTIYKTKRVGAKKGFELLKKKADALKMRFQAMLREIQKTKTAMSHEAAEAFFSLTQA-QYAAGDFRNKVIESVTTAEIRMRNRIDNVAGVKLPVFTEVEVSRDKSDNIGLSGGGGKIQLCREKFRTLLSALIKLASLQTSFLTLDEALKVTNRRVNALDNVTIPRIETTISYISRELDELEREDFVRIKKV 203
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4855.11979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLL6_ECTSI2.020e-13985.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CEZ0_9STRA3.280e-11186.83ATP synthase subunit D-domain-containing protein n... [more]
F0YKB3_AURAN2.030e-8261.63Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2V1A2_9STRA4.230e-8158.40Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TG62_9STRA5.260e-7966.82H-or na-translocating f-v-type and a-type atpase (... [more]
A0A0P1AP31_PLAHL3.730e-7865.87H-or na-translocating f-v-type and a-type atpase (... [more]
M4BRW9_HYAAE1.350e-7757.81Uncharacterized protein n=2 Tax=Peronosporaceae Ta... [more]
D0N597_PHYIT6.270e-7766.17H-or Na-translocating F-type, V-type and A-type AT... [more]
A0A7S1XVP0_9STRA5.080e-7667.16Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
F0WQ31_9STRA5.660e-7665.67H or Na translocating Ftype putative n=2 Tax=Albug... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4855contigH-paniculata_contig4855:3471..8333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score412.5
Seed ortholog evalue1.4e-112
Seed eggNOG ortholog2880.D7FLL6
Preferred nameVMA8
KEGG koko:K02149
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
Hectar predicted targeting categoryother localisation
GOsGO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006873,GO:0006885,GO:0007035,GO:0008150,GO:0008324,GO:0009987,GO:0012505,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030003,GO:0030004,GO:0030641,GO:0031090,GO:0031224,GO:0032991,GO:0033176,GO:0033178,GO:0033180,GO:0034220,GO:0036442,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044769,GO:0045851,GO:0046961,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071944,GO:0090662,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1902600
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1394@1,KOG1647@2759
Ec32 ortholog descriptionATPase, V1 complex, subunit D
Ec32 orthologEc-17_000670.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons6
Model size1554
Cds size756
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4855.11979.1prot_H-paniculata_contig4855.11979.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4855 4136..8200 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930437.0410645-UTR-H-paniculata_contig4855:3470..41351622930437.0410645-UTR-H-paniculata_contig4855:3470..4135Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4855 3471..4135 -
1691481291.8485808-UTR-H-paniculata_contig4855:3470..41351691481291.8485808-UTR-H-paniculata_contig4855:3470..4135Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4855 3471..4135 -
1622930437.1762757-UTR-H-paniculata_contig4855:8200..83331622930437.1762757-UTR-H-paniculata_contig4855:8200..8333Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4855 8201..8333 -
1691481291.9248848-UTR-H-paniculata_contig4855:8200..83331691481291.9248848-UTR-H-paniculata_contig4855:8200..8333Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4855 8201..8333 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930437.0634117-CDS-H-paniculata_contig4855:4135..43131622930437.0634117-CDS-H-paniculata_contig4855:4135..4313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4855 4136..4313 -
1691481291.8593931-CDS-H-paniculata_contig4855:4135..43131691481291.8593931-CDS-H-paniculata_contig4855:4135..4313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4855 4136..4313 -
1622930437.0928519-CDS-H-paniculata_contig4855:4822..49201622930437.0928519-CDS-H-paniculata_contig4855:4822..4920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4855 4823..4920 -
1691481291.8710186-CDS-H-paniculata_contig4855:4822..49201691481291.8710186-CDS-H-paniculata_contig4855:4822..4920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4855 4823..4920 -
1622930437.1081533-CDS-H-paniculata_contig4855:5697..58351622930437.1081533-CDS-H-paniculata_contig4855:5697..5835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4855 5698..5835 -
1691481291.880772-CDS-H-paniculata_contig4855:5697..58351691481291.880772-CDS-H-paniculata_contig4855:5697..5835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4855 5698..5835 -
1622930437.1213975-CDS-H-paniculata_contig4855:6464..65691622930437.1213975-CDS-H-paniculata_contig4855:6464..6569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4855 6465..6569 -
1691481291.8905075-CDS-H-paniculata_contig4855:6464..65691691481291.8905075-CDS-H-paniculata_contig4855:6464..6569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4855 6465..6569 -
1622930437.136286-CDS-H-paniculata_contig4855:7553..76791622930437.136286-CDS-H-paniculata_contig4855:7553..7679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4855 7554..7679 -
1691481291.9007576-CDS-H-paniculata_contig4855:7553..76791691481291.9007576-CDS-H-paniculata_contig4855:7553..7679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4855 7554..7679 -
1622930437.1579192-CDS-H-paniculata_contig4855:8089..82001622930437.1579192-CDS-H-paniculata_contig4855:8089..8200Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4855 8090..8200 -
1691481291.911525-CDS-H-paniculata_contig4855:8089..82001691481291.911525-CDS-H-paniculata_contig4855:8089..8200Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4855 8090..8200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4855.11979.1

>prot_H-paniculata_contig4855.11979.1 ID=prot_H-paniculata_contig4855.11979.1|Name=mRNA_H-paniculata_contig4855.11979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=252bp
MSAQVAPTRMALQMYKGKLVGAKKGYELLKKKSDALKARFRNIAKQIHEL
KQTMREDASTAFFSLTQAAQYVSGDFRGKVLDTPRPASVRCRARTDNVAG
VKLPVFESYETGSETKDNIGLSGGGQKVSQCREKYKQWVENLIKLASLQT
SFVTMDEALKVTNRRVNALENVTIPRMEHVISYINRELDELEREDFTRLK
KVVEKKREAAAKERADMDEVALAEKMAALAATGDDTLLDDYDAQEQGDVY
F*
back to top

mRNA from alignment at H-paniculata_contig4855:3471..8333-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4855.11979.1 ID=mRNA_H-paniculata_contig4855.11979.1|Name=mRNA_H-paniculata_contig4855.11979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4863bp|location=Sequence derived from alignment at H-paniculata_contig4855:3471..8333- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGGGGGTTCCGAGTGGTTTCGTGCTCGGCGAAAGTAGTAGTAGGCCTC
GAAAAGAACTGAGCGTGTCCTACGAAGAGACGCTTATCGAGATTCATACT
GTTGTTATAGACTGTGGTTGAAGCAGTTGCAACATGTCCGCTCAGGTGGC
GCCGACGCGCATGGCGCTACAGATGTACAAGGGAAAGCTGGTTGGAGCGA
AAAAGGGGTACGAGCTTCTCAAGAAGAAGTCTGATGCTCTCAAGGTAAAT
CACTCTGGAAGTTACTGTCCGTTCGGCAACAGACATAAGAACTGTCTGTA
CGAGCAGGGTTGTTCTGTTTCCACGTTATGGGTTGCGTGGACTTTGCAAG
CATATTATGCGGTAGTCAATGGCGGTCAAGTGATTCTATGCAGCTTTGTT
GGGTTGTTCTCGAGTGCCCTCGTCGTGCTTCTTTGCTCCAATTTTCTTGC
AAAAACAATCCCCATCTCTTTTATATATGCAATCGTCACGTTTCTCGCCA
AAGAGGCCCCAAATTGCGCCCCTCTTCGGTTGCCTTCTCCTGCTACAGCT
GTCCTCGTTGCTCGATACCAAATTCCTACGAAGATGCTAGCTTCTCCATG
ATCATCACATAGCACCGATTCACGTATATAACTCCCTCCCCTTTTTTCTC
GCAGGCTCGATTTCGTAACATCGCGAAGCAGATTCACGAGTTGAAGCAAA
CGATGCGCGAGGATGCCTCGACCGCCTTCTTCTCCCTCACGCAGGCAGCG
CAGTACGTGTCGGGTGACTTCCGCGGCAAGGTATAGTAAAGTACAAACTT
CGTCGCTCTCTCTCCTTATCTGCTGGAATAATAGCAAGATTCAAACAGTA
ATTTCTTATTCAGGTCAACTGCGGTACAGGTTGTAGCTTCTTGGAGTTAA
TTGACGAATTCACCTTGTCGAGATCGTTCTTAATGGCAGGTGTTGTTTAC
ACGATAGTGAAGGAAGAGTTAGCACAGCTGCAGAGCTCATAAGTCCAAAA
CGTCTTCAGCTACGCTATCTATTGAACCCACTAACATTCTGGACAATTTT
TCCTGCGTGTATTGCGTAGTGCATAGTCGTTGCTGCAGCGGGGTTGATCT
CGGTTACAAGTCTTGTCGTTTTTATCTGTTCATCTTCATCAGCTTTGTTT
CGCGCGCGTGGCTAAGGGGGTGACCTGAGTAAGACGCATCTCTCATTTTC
ATGACCGCATGCGGTTTGGCTTCGACCCAGAGTACTGCCCCAGCCAGTTG
AGTCTGTCAAAAATTTGATCTTCGCTTTAGGAGCTCCCAATTCGCGTGTT
CTACATGTGCAGAAGCGAACGCTTTGTAAACACCGTACTATGCTGTGGCT
CTCTTGATAACAAAGCTCCTGCAAACTATCCGTGAAGCTCTGAGAACGCG
AGTGCTACATATTGGAGAAGCAGTCCCTTACTGCAACAACTTGCACAAAG
TGCATCCCCTCCGCGTGTAACCAACTGCTAGATTGAAACTCTGTTGCACC
GAGTGTTGCTGTCCTGATTGGCGACGTGATGTGAGATGCTTCCAATGGTG
CCAGGGCTCTACAGGGTTTACTCGTCACAAGAGGCCCATCTACCCTCCTG
TTGCGAGCCTTTTCGGGTATGGCACGATGTGTTGCAACGAAAACATATTT
TGGACATGATGGAACGCCCAAGATGCGACTGAACCCTCCTTGACTTCGTT
CTTGCATTATTTACCCATTCGTTCTCTCACTCCTTGCTTGGACTTGATCC
ACGCTGACAATCAGGTTCTTGACACTCCGCGGCCAGCGTCGGTGCGCTGC
AGGGCTAGGACCGACAACGTCGCTGGTGTTAAACTTCCTGTTTTCGAGTC
GTACGAAACGGGTTCGGAGGTGGGATTACCTTCATGTGTGGGGAAAAGTA
ACCCATTTTTAGCGCCCAGGTCTTGTAATCTCGGTATTGGACTGTCTGGA
CAGCGACGGGTTTCTATTCCCGTGATGATGTCATGGTCTTCGTTTTCCTC
TGTTTTAGGCGCGCAGCAACTAGATGAATGTGGGCTTTAAAACGCTAATT
AGGGCTCCATCTGTAGCTGGAAGGAGCCAGCTCCAGTCCCACCTAGCTAT
CGTGGAGTGGAAGAGAAGAATGGACGAACGAATTTCTGCAGAGGGCACGA
TCTAGGCTGTAATTTAATAAGTGCATTCTGGAAGAAGACAACGTTGCGGA
GGAACATAATAATCAGGAGCAAATTAGAAAATTGACATCTTGAAAAACAA
AATTCAGTTTCCAAAAAAACAAAAGAAATGGTCCTGATTATTATGTTCCT
CCGTAATAGTGATGTGGACGTAGCTTTTGGCACATGAGCGAAACTTCTGT
CTGTCGTGGTTGGCGCGGATAATGCATGAGTAGAACCTGTGGCGCACAGA
GGTTCGACTCGTATTATTTGAAAAATATTAGCTTCGAGCTCATGTCGCAA
CGCCACCTCTGTGTGTGTGTGTCGGTTCGGTGTGATTTATCCCGTCAGAC
CAAGGATAACATTGGTCTTTCGGGTGGTGGGCAGAAGGTCTCACAATGTC
GCGAGAAGTACAAGCAATGGGTGGAGAACTTGATCAAGCTGGCTTCGCTG
CAAACTTCGTTCGTCACCATGGACGAGGCGCTCAAAGTGGGTTGCTGCAT
GCGTGAAGAACCAAATGCCCGGCAGTGCTAAGGTCTTCCCGTCGATTTTC
TCAACACGGAGGCGTTGTCCTCATCAGTTCGTAGTGTAATTTCTAAACGA
TGATGTACCCCACCATCCCGTACAGACCCTTTGTGTTGTAACGTCGTCCA
TTGATTTATGCAGAGAGTTGTGTGTTTTCAATGCTTTTTTTTAGGAATCT
GCTACTGTATAAAATAATAAGCAGCATTGAGGTATGGTGACTTGGATTGC
CCCCTTGGACCATGTTGAGCGTGGTCATGGCGTTTGGAATGCCAAGTAGT
TGGTATAAAAAGTCGCAGCTAGCTGTTCACAGCCTTAGGTAGAACGTTTC
TGCCGAATATCGTATGGCAATAGCAAGATAACTCCGTTAATTTGCGATCT
GTGTCACATAAATGTACAACTACAATGAGTTCAGCACGAAAGCCGTGTAG
GTCATGTGGACTGAGCTATCTCCTGAGGTAGCACCGCCCAAACGCGGCCA
AACGTATCGTACCGTGGCTAGCGCAGTTACTAGTATGTGATTTTCTTTGG
CTTTTAAGGCTTTCTAGATCGGCTGCGGTAGGCGTGCTGCCCCTAACTGG
ACCCATTGTAGCAGTTTTAATCAGCGGTCAACTTTTCGTGGCTATGCTGC
ATGTGCGGTTTTCTCGATCTAGGTATGATATTGCTCGCCAGTTAGAGTGT
GGTTGATTTTTTACGTCCTTCTTCTCTGCTCCCCTGTCACCTGGGTGCTC
ATCGTTTCAACAGGTGACGAACCGCCGCGTGAACGCGCTAGAAAACGTGA
CGATTCCCCGTATGGAGCATGTGATCTCGTACATCAACAGGGAGCTAGAC
GAGCTAGAGAGGTAACCCTATTTTCGTCTCTTCTACTAATCCAAGGCAAC
ATGTGTGGGTTGTCTCTATCAAATCAGGAATGCCAGCTTTGAGTTATTCC
TGGATAGGGATATCGAGAGCGTCGGTAGAACAAGTCATGTTCCGGCAGTC
GGCGTAAGATGCGAGTGCAGTAGGACTTTCCTGTGGAAAAGGCCAATACT
TGAATACTGTTACGTAGTGGATACGGAATTTGCCCGACTAGGTGTGTAGC
CGGAACGCCGTCACCACGAATGCGCCATGTCAGACAAGGGTGTTGCACAT
TCAGATGATACTCTGACCATTTACTGGGCAGGCTAAAATGGTGATCGCTT
TTCTTATGTGATTCGAGTTTTTGTCGGCATCGTTGCTGTCCCCATGAGCT
CGCCCCAGACGGCGTCTTCTGTTCTTCGTACGCTCTTTCTATCGCTCACC
GTCACACTCGCTCTGTGTATAATTGTTTCGAATCCAAACGGGTGGGACGT
TTGTTTTTGTTGGGTTGCAGAGAGGACTTCACCCGCCTGAAAAAGGTGGT
GGAGAAGAAGAGGGAGGCAGCCGCAAAGGAGAGGGCAGACATGGACGAAG
TGGCCTTGGCGGAGAAAATGGCAGCGCTCGCGGCGACGGGAGATGACACG
CTTCTCGATGACTACGATGCGCAAGAACAGGGGGACGTTTATTTCTAATT
CTAAGCCTCTTCGCTTTGTAGAATTGGGGCAGTCGTTTTTTTAAGGTATC
AAAAGAGACATGCCCTGTCTATTAGGTACGAGTATTATATTACGTCCGTA
TTTTGCGGAACGGTATCGCTTTCTTGTGGAGATTTCACTTGTGTTTTTCT
TTCGTCGTACCGTATGTTACGTACGGTCACGGAGAACTCTATGTAACATG
TGAAGCATAAGACAGTAAATATATTGCATCTCGATTTTGAGGCTGAGGCG
CCTTCGCAAAGAGATGAGAGGAGAGTGATGCCAATTTTCGGAGGGGCAAG
GAGGCCTTCGTTGTTTGTAGAATTTACGAGGCGTCTTTCGACAGACAATA
TTAAACGAGGGTACTACCTGTAGGGCTTGCTGTCAAACACGAGCTGTCAT
TCTGTTATATATCTTCATAACTAATCTGAAGTGATCCAATGCTGTATTGC
CTGTCTGGCCTCCCATATGTTATGTTGCGATCTTCATATTCCATTTCTGC
GTCATGTATCGCCGGTTTTTGCGATCTGTATCACCTTTTCGTGACACTGA
GTGCTTCTTGCACATACCGCTCTGCTAAGTTCGATGTCATTTGTGGTCGT
ATCAACCGCCCTGCTGAAAGTCGGGCGTTCCAGGGTTTCCTCCCTTGCTT
TTCTCTGTTTCCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4855:3471..8333-

>mRNA_H-paniculata_contig4855.11979.1 ID=mRNA_H-paniculata_contig4855.11979.1|Name=mRNA_H-paniculata_contig4855.11979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1512bp|location=Sequence derived from alignment at H-paniculata_contig4855:3471..8333- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCGCTCAGGTGGCGCCGACGCGCATGGCGCTACAGATGTACAAGGG
AAAGCTGGTTGGAGCGAAAAAGGGGTACGAGCTTCTCAAGAAGAAGTCTG
ATGCTCTCAAGATGTCCGCTCAGGTGGCGCCGACGCGCATGGCGCTACAG
ATGTACAAGGGAAAGCTGGTTGGAGCGAAAAAGGGGTACGAGCTTCTCAA
GAAGAAGTCTGATGCTCTCAAGGCTCGATTTCGTAACATCGCGAAGCAGA
TTCACGAGTTGAAGCAAACGATGCGCGAGGATGCCTCGACCGCCTTCTTC
TCCCTCACGCAGGCAGCGCAGTACGTGTCGGGTGACTTCCGCGGCAAGGC
TCGATTTCGTAACATCGCGAAGCAGATTCACGAGTTGAAGCAAACGATGC
GCGAGGATGCCTCGACCGCCTTCTTCTCCCTCACGCAGGCAGCGCAGTAC
GTGTCGGGTGACTTCCGCGGCAAGGTTCTTGACACTCCGCGGCCAGCGTC
GGTGCGCTGCAGGGCTAGGACCGACAACGTCGCTGGTGTTAAACTTCCTG
TTTTCGAGTCGTACGAAACGGGTTCGGAGGTTCTTGACACTCCGCGGCCA
GCGTCGGTGCGCTGCAGGGCTAGGACCGACAACGTCGCTGGTGTTAAACT
TCCTGTTTTCGAGTCGTACGAAACGGGTTCGGAGACCAAGGATAACATTG
GTCTTTCGGGTGGTGGGCAGAAGGTCTCACAATGTCGCGAGAAGTACAAG
CAATGGGTGGAGAACTTGATCAAGCTGGCTTCGCTGCAAACTTCGTTCGT
CACCATGGACGAGGCGCTCAAAACCAAGGATAACATTGGTCTTTCGGGTG
GTGGGCAGAAGGTCTCACAATGTCGCGAGAAGTACAAGCAATGGGTGGAG
AACTTGATCAAGCTGGCTTCGCTGCAAACTTCGTTCGTCACCATGGACGA
GGCGCTCAAAGTGACGAACCGCCGCGTGAACGCGCTAGAAAACGTGACGA
TTCCCCGTATGGAGCATGTGATCTCGTACATCAACAGGGAGCTAGACGAG
CTAGAGAGGTGACGAACCGCCGCGTGAACGCGCTAGAAAACGTGACGATT
CCCCGTATGGAGCATGTGATCTCGTACATCAACAGGGAGCTAGACGAGCT
AGAGAGAGAGGACTTCACCCGCCTGAAAAAGGTGGTGGAGAAGAAGAGGG
AGGCAGCCGCAAAGGAGAGGGCAGACATGGACGAAGTGGCCTTGGCGGAG
AAAATGGCAGCGCTCGCGGCGACGGGAGATGACACGCTTCTCGATGACTA
CGATGCGCAAGAACAGGGGGACGTTTATTTCTAAAGAGGACTTCACCCGC
CTGAAAAAGGTGGTGGAGAAGAAGAGGGAGGCAGCCGCAAAGGAGAGGGC
AGACATGGACGAAGTGGCCTTGGCGGAGAAAATGGCAGCGCTCGCGGCGA
CGGGAGATGACACGCTTCTCGATGACTACGATGCGCAAGAACAGGGGGAC
GTTTATTTCTAA
back to top