mRNA_H-paniculata_contig4846.11965.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4846.11965.1
Unique NamemRNA_H-paniculata_contig4846.11965.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4846.11965.1 vs. uniprot
Match: D7FVT7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT7_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 7.440e-45
Identity = 119/208 (57.21%), Postives = 137/208 (65.87%), Query Frame = 2 
Query:  782 RSSGGTKGTKVRVTDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGSAMSVL---GQGEAEIPAEYSDYVSTFQGAKNKSG-LGKSEGP-----DLADLGADIARFRAKEGTRSESLGESVKSGAKDLISNIITIDFFVVIAFMLWFIAGVVSTYGFKNTFLLDEFNESWTPIVQPALGLLMGGTIIGGVVSKLGESGDDDGNQR 1378
            RS GGTKGTKVRV DS                 XXXXXXXXXXXXXX           GQG A    E+        G + ++   GK   P     +LADLGADI RFR  E  + E+ GES+ SGAKD+IS II+IDFFVVIAFMLWFIAGVVS+YGF NTFLLD+FN+ WTP+VQPALG+LMGGTI GGVVSKLG SG+D+ + R
Sbjct:  167 RSVGGTKGTKVRVVDSSDDDMSEKLAGVASAASXXXXXXXXXXXXXXXXXXXXXXXXXGQGGAPAADEFDIDSMPAPGERGQARRAGKRTTPGKTASELADLGADIERFRRAENRQPETAGESIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVSKLGGSGNDEDDNR 374
[Close]
BLAST of mRNA_H-paniculata_contig4846.11965.1 vs. uniprot
Match: A0A835ZDF1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDF1_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.720e-16
Identity = 45/113 (39.82%), Postives = 72/113 (63.72%), Query Frame = 2 
Query: 1046 DLADLGADIARFRAKEGTRSESLGESVKSGA--KDLISNIITIDFFVVIAFMLWFIAGVVSTYGFKNTFLLDEFNESWTPIVQPALGLLMGGTIIGGVVSKLGESGDDDGNQR 1378
            ++ +LGADIA+++ +E         S+ +GA  K + S I+T DFF+V+ F+ W +  V++    K+  LLD F+ +W PI+QPALG+LM GTI  G VS+L   G  +G+++
Sbjct:   70 NMDELGADIAKYKRREAAAGPK-DSSLDAGATLKAIFSWILTADFFIVVGFLGWLVVAVIARSVLKDGSLLDGFSAAWAPIIQPALGVLMAGTIASGTVSQLTGGGGGEGDEQ 181
[Close]
BLAST of mRNA_H-paniculata_contig4846.11965.1 vs. uniprot
Match: A0A7S2V0Y3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0Y3_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.030e-16
Identity = 43/94 (45.74%), Postives = 60/94 (63.83%), Query Frame = 2 
Query: 1058 LGADIARFRAKEGTRSESLGESVKSGAKDLISNIITIDFFVVIAFMLWFIAGVVSTYGFKNTFLLDEFNESWTPIVQPALGLLMGGTIIGGVVS 1339
            L AD+A F+  +    +         AKD+ S I+TIDFFVV+  + WF+ G+   YGF+ +F+LD F  S+  +VQPA+GLLM GTI GGV+S
Sbjct:  148 LAADLAAFKRTQAPSKKEEDAGAMGQAKDIFSVILTIDFFVVLGMLGWFLVGIAFRYGFQQSFILDSFKASFDTLVQPAIGLLMLGTIAGGVIS 241
[Close]
BLAST of mRNA_H-paniculata_contig4846.11965.1 vs. uniprot
Match: A0A7S1Y1F8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y1F8_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.810e-15
Identity = 47/108 (43.52%), Postives = 68/108 (62.96%), Query Frame = 2 
Query: 1046 DLADLGADIARFRAKEGTRSESLGESVKSGAKDLISNIITIDFFVVIAFMLWFIAGVVSTYGF-KNTFLLDEFNESWTPIVQPALGLLMGGTIIGGVVSKLGESGDDD 1366
            ++ DL  DI+  R KEG + E  G  +   AK     I+  DFFVV+AF+ WFI G++  YG    + +LD F  ++  +VQPALGLLMGGT++GG + K+  +G+DD
Sbjct:   65 EMDDLARDISTLRKKEGLKQEDEG-GIGEFAKGAFVKILLADFFVVLAFLGWFIVGLLQKYGGGAESPILDSFRANFETLVQPALGLLMGGTLLGGALEKI--NGNDD 169
[Close]
BLAST of mRNA_H-paniculata_contig4846.11965.1 vs. uniprot
Match: A0A7R9U2Y0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2Y0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.220e-12
Identity = 46/112 (41.07%), Postives = 68/112 (60.71%), Query Frame = 2 
Query: 1034 SEGPDLADLGADIARFRAKEG----TRSESLGES-VKSGAKDLISNIITIDFFVVIAFMLWFIAGVVSTY-GFKNTFLLDEFNESWTPIVQPALGLLMGGTIIGGVVSKLGE 1351
            S G ++ +L  DIA  R +E     TR++   E  +K  A+   + I+  DF +V+ F+ WFI GV+  Y G   + +LD F  S+  +VQPALGLLMGGT++GG++ KL E
Sbjct:   58 SSGSEMNELERDIAALRRRETSVARTRAQDEPEGGLKDFARGAFAKILLADFVLVLGFLGWFIVGVLQKYVGGGASPILDSFRASFETLVQPALGLLMGGTLLGGLLEKLKE 169
[Close]
BLAST of mRNA_H-paniculata_contig4846.11965.1 vs. uniprot
Match: W7TYN1_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYN1_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.420e-11
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 2 
Query:  998 FQGAKNKSGLGKSEGPDLADLGADIARFRAKEGTRSESLGE-----SVKSGAKDLISNIITIDFFVVIAFMLWFIAGVVSTYGFKNTFLLDEFNESWTPIVQPALGLLMGGTIIGGVVSKL 1345
             Q A + S +   E      L  DI RFR KE       G+     S+   A  ++  ++  DFFVV+AF+ WF+ GVV      +  ++D+F + W P++QPALG+LM GT+  G ++ +
Sbjct:   98 IQDATSSSPISPGEVDLQERLQQDIVRFRKKEREVQALEGDVTGFASLADKAGSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTLGVGALNSV 218
[Close]
BLAST of mRNA_H-paniculata_contig4846.11965.1 vs. uniprot
Match: B5YMI6_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMI6_THAPS)

HSP 1 Score: 73.9 bits (180), Expect = 5.530e-11
Identity = 51/130 (39.23%), Postives = 73/130 (56.15%), Query Frame = 2 
Query:  989 VSTFQGAKNKSGLGKSEGPDLADLGADIARFRAKEGTRS-ESLGES-VKSGAK--DLISNIITIDFFVVIAFMLWFIAGVVSTYGFKNTFLLDEFNESWTPIVQPALGLLMGGTIIGGVVSKLGESGDDD 1366
            VST Q A       +++   +  L AD    RA   T    +LGE  +  G K  D+IS I+TIDFFVV+  + WF+AG+  +Y  K+  +   FN ++  + QPALGLLM G+I+GG    LG+  D+D
Sbjct:  141 VSTTQVAS------RTQDDSMEQLLADARSMRASSYTEGGATLGEDEISMGDKVFDVISTIVTIDFFVVLGLLAWFLAGIFCSYVLKDDTVQIAFNMNFERVTQPALGLLMIGSIVGG----LGKKDDED 260
[Close]
BLAST of mRNA_H-paniculata_contig4846.11965.1 vs. uniprot
Match: K0TI04_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TI04_THAOC)

HSP 1 Score: 72.0 bits (175), Expect = 1.280e-10
Identity = 46/136 (33.82%), Postives = 70/136 (51.47%), Query Frame = 2 
Query:  974 EYSDYVSTFQGAKNKSGLGKSEGPDLADLGADIARFRAKEGTRSESLGE-----SVKSGAKDLISNIITIDFFVVIAFMLWFIAGVVSTYGFKNTFLLDEFNESWTPIVQPALGLLMGGTIIGGVVSKLGESGDDD 1366
            E  D V  FQG        ++    L  L AD    R +    +  L E     S+K    +++S I+TIDFFVVI  ++WFIAG+  +    N  +   FN ++  + QPALG+LM G+I G V +  G+S +++
Sbjct:   92 ELFDNVDEFQG--------RTTDDSLEQLLADARSMRTRTSDEASPLKEEETPSSIKDTVFEVVSTIVTIDFFVVIGLLVWFIAGIFCSSVLGNDTVQIAFNMNFEKVTQPALGILMIGSIAGAVGNNDGDSNENE 219
[Close]
BLAST of mRNA_H-paniculata_contig4846.11965.1 vs. uniprot
Match: A0A7S1YWN0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YWN0_TRICV)

HSP 1 Score: 70.1 bits (170), Expect = 1.670e-10
Identity = 45/118 (38.14%), Postives = 63/118 (53.39%), Query Frame = 2 
Query: 1019 SGLGKSEGPDLADLGADIARFRAKEGTRS----------ESLGESVKSGAKDLISNIITIDFFVVIAFMLWFIAGVVSTYGFKNTFLLDEFNESWTPIVQPALGLLMGGTIIGGVVSK 1342
            +G G+ EG  L  L AD  + RA E              E  G SV    +++IS I+T DFFVVI  +LWF+AG+  +Y  K+  +   FN  + P+VQPALG+LM  +  G   +K
Sbjct:   38 AGGGRPEG--LEALLADAKKMRAAESPEGASSSGVSKEGEEEGFSVSDTIRNVISTIVTADFFVVIGLLLWFLAGIFCSYVLKDDGVQIAFNNIFEPVVQPALGVLMIASAAGAAFNK 153
[Close]
BLAST of mRNA_H-paniculata_contig4846.11965.1 vs. uniprot
Match: A0A1Y1IJR1_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IJR1_KLENI)

HSP 1 Score: 68.9 bits (167), Expect = 6.650e-10
Identity = 32/87 (36.78%), Postives = 50/87 (57.47%), Query Frame = 2 
Query: 1103 SESLGESVKSGAKDLISNIITIDFFVVIAFMLWFIAGVVSTYGFKNTFLLDEFNESWTPIVQPALGLLMGGTIIGGVVSKLGESGDD 1363
            ++   ++     K +I  I+  DFF +I  +LW IAGVV      +T LLD +   W  + QPA+G+LM GTI+ G +S L ++ D+
Sbjct:   93 TKEFSDNATRATKSVIDTILVADFFFIILVLLWLIAGVVERQALDSTKLLDVWLPLWGTVFQPAIGVLMAGTIVSGTISTLSQNPDE 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4846.11965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7FVT7_ECTSI7.440e-4557.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZDF1_9STRA2.720e-1639.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V0Y3_9STRA4.030e-1645.74Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1Y1F8_9STRA1.810e-1543.52Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U2Y0_9STRA2.220e-1241.07Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7TYN1_9STRA3.420e-1133.88Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
B5YMI6_THAPS5.530e-1139.23Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
K0TI04_THAOC1.280e-1033.82Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S1YWN0_TRICV1.670e-1038.14Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A1Y1IJR1_KLENI6.650e-1036.78Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4846contigH-paniculata_contig4846:7467..11095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue8.8e-10
Seed eggNOG ortholog35128.Thaps6802
Hectar predicted targeting categorychloroplast
EggNOG OGs2CX5Z@1,2RWD5@2759,2XDMX@2836
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_002090.1
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size1752
Cds size1155
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4846.11965.1prot_H-paniculata_contig4846.11965.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4846 7838..10869 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930434.8841884-UTR-H-paniculata_contig4846:7466..78371622930434.8841884-UTR-H-paniculata_contig4846:7466..7837Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4846 7467..7837 -
1691481290.8461702-UTR-H-paniculata_contig4846:7466..78371691481290.8461702-UTR-H-paniculata_contig4846:7466..7837Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4846 7467..7837 -
1622930434.9204364-UTR-H-paniculata_contig4846:10869..110951622930434.9204364-UTR-H-paniculata_contig4846:10869..11095Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4846 10870..11095 -
1691481290.900629-UTR-H-paniculata_contig4846:10869..110951691481290.900629-UTR-H-paniculata_contig4846:10869..11095Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4846 10870..11095 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930434.8964844-CDS-H-paniculata_contig4846:7837..84071622930434.8964844-CDS-H-paniculata_contig4846:7837..8407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4846 7838..8407 -
1691481290.867491-CDS-H-paniculata_contig4846:7837..84071691481290.867491-CDS-H-paniculata_contig4846:7837..8407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4846 7838..8407 -
1622930434.9082365-CDS-H-paniculata_contig4846:10284..108691622930434.9082365-CDS-H-paniculata_contig4846:10284..10869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4846 10285..10869 -
1691481290.890125-CDS-H-paniculata_contig4846:10284..108691691481290.890125-CDS-H-paniculata_contig4846:10284..10869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4846 10285..10869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4846.11965.1

>prot_H-paniculata_contig4846.11965.1 ID=prot_H-paniculata_contig4846.11965.1|Name=mRNA_H-paniculata_contig4846.11965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=385bp
MLSFGGLVALSFVCSTSGFTVTAPLSSSSSSTRPCHTSSSCTHAWHERLG
SATTWPGRRVRVGYADRWVSPSVIPSGGRPAKACLAATSGGIGEQEKATV
EAATAAAPRLKRVRRRRKDADVIDTANEEGGVNSAVTTATPADGFVEPVV
PAASVPVLQPDVAPPIVEEAMATEAAEEVGLVLPSRSSGGTKGTKVRVTD
SADNIDITALASAASGAAGGAASAVSQAAQSAMGSAMSVLGQGEAEIPAE
YSDYVSTFQGAKNKSGLGKSEGPDLADLGADIARFRAKEGTRSESLGESV
KSGAKDLISNIITIDFFVVIAFMLWFIAGVVSTYGFKNTFLLDEFNESWT
PIVQPALGLLMGGTIIGGVVSKLGESGDDDGNQR*
back to top

mRNA from alignment at H-paniculata_contig4846:7467..11095-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4846.11965.1 ID=mRNA_H-paniculata_contig4846.11965.1|Name=mRNA_H-paniculata_contig4846.11965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3629bp|location=Sequence derived from alignment at H-paniculata_contig4846:7467..11095- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATACGAGCTATTGATAACACGGAAACGGAGGAAACCAAGCCTGGCTGAA
CTATATAGTGCCAGCATCTAGACGCACTTCACTCTGGTCGTGAGAGAAGC
CTCGCCCTCGCTGCCTGCTGCAACAACAATCTGCGCTTGCCTCTAAGAGT
TCAGCCTGCAGTACACACAACATTTAGGAGTCGGTGTGTTCCTTCAAGTA
CTGCAAGACTCAAGACAGAGAGGATAATGCTTTCCTTCGGTGGTCTGGTC
GCCCTATCGTTCGTCTGCAGCACCTCGGGCTTCACCGTCACAGCACCCCT
GTCCTCATCATCATCATCCACCCGTCCTTGCCACACTAGCAGTAGCTGTA
CACACGCGTGGCATGAACGTCTCGGGTCAGCAACGACATGGCCAGGGAGA
CGGGTTCGTGTTGGGTATGCTGATCGTTGGGTTTCGCCGAGTGTCATCCC
CTCTGGCGGACGTCCGGCAAAGGCATGTTTGGCAGCAACATCGGGGGGTA
TAGGAGAGCAAGAAAAGGCCACGGTAGAGGCGGCCACGGCGGCAGCACCA
AGACTGAAGAGGGTTCGCAGACGCCGAAAGGACGCAGATGTCATTGACAC
AGCAAACGAAGAGGGGGGTGTCAACAGTGCTGTGACAACTGCGACCCCCG
CAGACGGTTTTGTGGAGCCAGTTGTACCGGCCGCCTCTGTGCCCGTTTTG
CAGCCAGACGTTGCTCCGCCGATAGTAGAAGAAGCGATGGCGACGGAAGC
GGCTGAGGAAGTTGGACTTGTGCTTCCTTCCCGTTCTTCTGGGGGCACGA
AGGGCACCAAGGTGATCGTGTTGGGAAAATGCGTGTCTTTCATACGCTAT
TATCAGTGTTTGTTTTTTTAACTCTTTTGGTCGAGAGAATGATTATGTCA
ACGTCAACGTCAACATAGTTGATGGTAGGTGACAGTCTAGCCTCTCCCCT
GCTCTGTGCAGTATTAACATGCTTTCTTCGCACCAAGCGTGAATTGACAA
TCGTGCTTTTGTTGCTAGTTTGATGAGGTCCCTGCGAATACTTCCCTCGA
AACTGTCATGCATCTATCAGTTAACATTTCGGGCCTCGGAGGCTATTTCA
GAACAAAAATGGATCTGCCAAGGATCTGCCAATTGAAATATTGGGCTAAG
TGCGCATAACCATTGTTCAATAGTGTACTGTGTAATGATGTCTGTCTTTA
GAGGACTGATTGTCTGAACAGTGGAGGCTCCCTGTGCCCGTGATCATGTA
ATAGGCGTCGCTTCTCCATGTTTTATGAGGAGGGGACCGGTCGACCCACT
TACACCTTACGCTAAAGAACAGTAGTAATTACTGTTTCCTGTACGGTTTG
CCACCGGATCATGTGAACGGAGAATGGAGCATTGACGGAGAATGAGATTT
GTGGATGACTGCCAGCTGGAGGTGCAAAAGTGTTTCACCCTTGGAAATAT
TTTAGGCACTTCGGAGAGAGACAGAAGATTATGCCAGGATTAATAATGGT
AGTTCACGGACCTACGCCCCAACGGGTAGGGTAGCTCGTGAACTGAACAT
GACTGGAAGTCTAGTCAAAGGTCTTTTAGTGGGTGAAACCCCCACACTGC
CTACTTGGTTCGGCCGAACCGGGGTGGCGCCTACCTTGCAGAGGAATAAA
TAACTGTTCTGTTACAGGAAATGCAGAAATACTTCGGTAGAAATACTTAA
GTATGGAAGCATCGGATAAAGGTTTTGCCTTTACCTTCCGGGGGTAAAAA
TAATAAAAATAATGGTAGTTTGTTGCAGTAAAATAATCAATATTGAACTT
GCAATATGTTGTTGTCGCACTGATGATCGTAGAAGCGTGTTTTCCTCATC
AGCGCTGGCCAAGGCGTGATGACCGAGGATCTTCCGCATGGACGAAAGGG
TAGGCATAGAGTATTGGCCTTGTAGGAAGCAAAACATTTACTATATGAAA
CGAGAATATGAAATAGTTCCATTTTCAGAACTTCACAAGAGTTTCGCACA
TCATATATAGTTTTTGAATACTCAAGTCTTTAAGATTCGTACAACAGATA
TTTTTGATCAGAAAAGAATATCATTGAGCTTTTGTGTCACATATTTGGAT
TAATTTAAACCTTGGTACGCAAGATATGCTGAGATTTTATTATATATAAA
AAAATCTGAGTCCGCGATGGAAAATAGTGTTTGCTTGTAAACCTCAAAGC
AAGAACTCTTACGCACCTGCATCGTCATATGTGGTGTATTCATTGTATCG
TTGAGATTAGGCCTCTGCGCGGTGGGGGACGCGTTGTCGCGTGTGTATGG
ATCGGCTCGCACGTTACCTATGAGCTTCTTGCTTTTGTATCTTCTTTACA
TCCGAAGTGCTTAAAACATTTTTTTACATTAATGCTCAATTCTCTGTTCA
CATTATCCGATGTTGTTTGCTGTACGGTTTGCCGTGTGAGGTATGTACGA
TGTTATATATGTTGAGCTGTCGCTGAAGCACTACAGGAAGATTCATCAAC
TTATACTGTAATGTACCATGAGTTCGCACGCAGTTGGAATAAGACCAAAC
AACGATTTTGATCATTCGCCTATACGCAGCTTCCAACGCTGCGTTTTCAT
GAGTGCCCACCCTTTTTTCCCACCCTCGTGATTCCCACACCTTTCGCCGA
ATCCGAACATAAAAAAACAAAATGCACCACGGTATTAGGTACGGGTGACT
GACTCTGCGGACAACATAGACATAACCGCACTAGCTTCGGCTGCCTCGGG
TGCCGCGGGAGGCGCAGCTTCTGCAGTGAGCCAAGCGGCCCAGTCCGCGA
TGGGATCAGCGATGTCGGTACTTGGCCAAGGCGAAGCGGAGATTCCGGCG
GAGTACAGCGACTACGTGTCCACATTTCAGGGAGCGAAAAATAAATCGGG
ATTGGGTAAGTCAGAAGGGCCTGACCTGGCCGATCTTGGCGCGGACATCG
CACGCTTCAGAGCGAAGGAGGGGACACGCAGCGAGAGCCTTGGGGAATCG
GTCAAGTCGGGAGCAAAGGATTTGATCTCGAATATAATCACAATCGATTT
CTTCGTTGTGATTGCTTTCATGCTCTGGTTCATCGCCGGAGTGGTGTCGA
CTTATGGCTTCAAGAATACGTTTTTGCTGGACGAGTTTAACGAGTCGTGG
ACGCCCATCGTGCAGCCTGCTCTAGGATTGCTCATGGGAGGCACGATTAT
CGGCGGAGTTGTATCCAAGTTGGGGGAGTCTGGGGATGATGATGGAAACC
AGCGGTAGGGCTGTCCATGTTGAGTGGGTTTGTACGGGGGGGAAAGGTGG
CGAGATGGGGATGATGTGCTAGCGGTTCCAGTTAAAAAGGCAGTGCCATC
CATCATAAGGATGCGTAGCGTATGTCGTCGCTGCAGGTGCGAAGCCTAAC
TTACATCGTTTTAAAAAAAAATCCAGCCTGATTTGGTTTCCAGCTATGGT
TCCGTGTTGTTGCCCGACGACGTCACATCGGAGAATGCGCGCCTGACAAC
AGTAGAACGATTGTATGCCCCGTGGGCCTCTACACACGTTTTAGAGAAAT
ACGATAAAAAAACGTTCAAGGCCGGTGCTGAGTCACTAAACGTTACTGAA
CTGTGTGTCGGTATGCAAAAAATACACCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4846:7467..11095-

>mRNA_H-paniculata_contig4846.11965.1 ID=mRNA_H-paniculata_contig4846.11965.1|Name=mRNA_H-paniculata_contig4846.11965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2310bp|location=Sequence derived from alignment at H-paniculata_contig4846:7467..11095- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTTCCTTCGGTGGTCTGGTCGCCCTATCGTTCGTCTGCAGCACCTC
GGGCTTCACCGTCACAGCACCCCTGTCCTCATCATCATCATCCACCCGTC
CTTGCCACACTAGCAGTAGCTGTACACACGCGTGGCATGAACGTCTCGGG
TCAGCAACGACATGGCCAGGGAGACGGGTTCGTGTTGGGTATGCTGATCG
TTGGGTTTCGCCGAGTGTCATCCCCTCTGGCGGACGTCCGGCAAAGGCAT
GTTTGGCAGCAACATCGGGGGGTATAGGAGAGCAAGAAAAGGCCACGGTA
GAGGCGGCCACGGCGGCAGCACCAAGACTGAAGAGGGTTCGCAGACGCCG
AAAGGACGCAGATGTCATTGACACAGCAAACGAAGAGGGGGGTGTCAACA
GTGCTGTGACAACTGCGACCCCCGCAGACGGTTTTGTGGAGCCAGTTGTA
CCGGCCGCCTCTGTGCCCGTTTTGCAGCCAGACGTTGCTCCGCCGATAGT
AGAAGAAGCGATGGCGACGGAAGCGGCTGAGGAAGTTGGACTTGTGCTTC
CTTCCCGTTCTTCTGGGGGCACGAAGGGCACCAAGATGCTTTCCTTCGGT
GGTCTGGTCGCCCTATCGTTCGTCTGCAGCACCTCGGGCTTCACCGTCAC
AGCACCCCTGTCCTCATCATCATCATCCACCCGTCCTTGCCACACTAGCA
GTAGCTGTACACACGCGTGGCATGAACGTCTCGGGTCAGCAACGACATGG
CCAGGGAGACGGGTTCGTGTTGGGTATGCTGATCGTTGGGTTTCGCCGAG
TGTCATCCCCTCTGGCGGACGTCCGGCAAAGGCATGTTTGGCAGCAACAT
CGGGGGGTATAGGAGAGCAAGAAAAGGCCACGGTAGAGGCGGCCACGGCG
GCAGCACCAAGACTGAAGAGGGTTCGCAGACGCCGAAAGGACGCAGATGT
CATTGACACAGCAAACGAAGAGGGGGGTGTCAACAGTGCTGTGACAACTG
CGACCCCCGCAGACGGTTTTGTGGAGCCAGTTGTACCGGCCGCCTCTGTG
CCCGTTTTGCAGCCAGACGTTGCTCCGCCGATAGTAGAAGAAGCGATGGC
GACGGAAGCGGCTGAGGAAGTTGGACTTGTGCTTCCTTCCCGTTCTTCTG
GGGGCACGAAGGGCACCAAGGTACGGGTGACTGACTCTGCGGACAACATA
GACATAACCGCACTAGCTTCGGCTGCCTCGGGTGCCGCGGGAGGCGCAGC
TTCTGCAGTGAGCCAAGCGGCCCAGTCCGCGATGGGATCAGCGATGTCGG
TACTTGGCCAAGGCGAAGCGGAGATTCCGGCGGAGTACAGCGACTACGTG
TCCACATTTCAGGGAGCGAAAAATAAATCGGGATTGGGTAAGTCAGAAGG
GCCTGACCTGGCCGATCTTGGCGCGGACATCGCACGCTTCAGAGCGAAGG
AGGGGACACGCAGCGAGAGCCTTGGGGAATCGGTCAAGTCGGGAGCAAAG
GATTTGATCTCGAATATAATCACAATCGATTTCTTCGTTGTGATTGCTTT
CATGCTCTGGTTCATCGCCGGAGTGGTGTCGACTTATGGCTTCAAGAATA
CGTTTTTGCTGGACGAGTTTAACGAGTCGTGGACGCCCATCGTGCAGCCT
GCTCTAGGATTGCTCATGGGAGGCACGATTATCGGCGGAGTTGTATCCAA
GTTGGGGGAGTCTGGGGATGATGATGGAAACCAGCGGTAGGTACGGGTGA
CTGACTCTGCGGACAACATAGACATAACCGCACTAGCTTCGGCTGCCTCG
GGTGCCGCGGGAGGCGCAGCTTCTGCAGTGAGCCAAGCGGCCCAGTCCGC
GATGGGATCAGCGATGTCGGTACTTGGCCAAGGCGAAGCGGAGATTCCGG
CGGAGTACAGCGACTACGTGTCCACATTTCAGGGAGCGAAAAATAAATCG
GGATTGGGTAAGTCAGAAGGGCCTGACCTGGCCGATCTTGGCGCGGACAT
CGCACGCTTCAGAGCGAAGGAGGGGACACGCAGCGAGAGCCTTGGGGAAT
CGGTCAAGTCGGGAGCAAAGGATTTGATCTCGAATATAATCACAATCGAT
TTCTTCGTTGTGATTGCTTTCATGCTCTGGTTCATCGCCGGAGTGGTGTC
GACTTATGGCTTCAAGAATACGTTTTTGCTGGACGAGTTTAACGAGTCGT
GGACGCCCATCGTGCAGCCTGCTCTAGGATTGCTCATGGGAGGCACGATT
ATCGGCGGAGTTGTATCCAAGTTGGGGGAGTCTGGGGATGATGATGGAAA
CCAGCGGTAG
back to top