mRNA_H-paniculata_contig4846.11964.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4846.11964.1
Unique NamemRNA_H-paniculata_contig4846.11964.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4846.11964.1 vs. uniprot
Match: D7FVT8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT8_ECTSI)

HSP 1 Score: 278 bits (710), Expect = 1.560e-84
Identity = 155/273 (56.78%), Postives = 184/273 (67.40%), Query Frame = 2 
Query:  233 LKVQGRDGKLHEFVVPPDRQEYYKNKILPRLVSSLDALRLTPPVTINRPAEEFSLGSAGAFFGFNRDASNLVLTWLSPDSWLELEGSCRAASTAVMNSMCWFSPGVMIGHSLRFRPDQRKVAYLRHRRAVERVAKAFQDLRRFARSPDSVFNPGATLSEIYSAEQRTGVVFPDEARASFTLFDGQARSTWLRAEGVIGGFKLLSLDQSVELMLEEACFRGALGKL-EFVPLADRRNSNAWLVAAVDDGRVCVVKPLSRPKIVARSWSGHLRVQ 1048
            L+VQ RDG+           E           +    L+LT P      A   +   A +F   NRD +NL+L +L+P+SWLE+E +CRA   AV +S CW   GV  G        Q K  Y+R RRA+ RV+ AFQDLRRFARSP SVFNPGATL++  +AEQRTGV+FPDEARASF LFDGQARS WLR+EGVIGGF+LLSL +SV+LMLEEACFRG  G   EFVPLA+RRNSN WL A V  GRVCV+KPLSRPK+VA SWS +LRVQ
Sbjct:    8 LEVQARDGRRLNIETALPGGE----------CTPTTTLKLTLPAL----ARSEAASPAASFLRLNRDPANLLLGYLAPESWLEVEQACRAGRVAVASSGCWTDKGVGDG--------QGKAVYVRQRRALHRVSGAFQDLRRFARSPSSVFNPGATLADTMNAEQRTGVLFPDEARASFLLFDGQARSGWLRSEGVIGGFELLSLAESVDLMLEEACFRGESGPPPEFVPLANRRNSNEWLAAEVGGGRVCVIKPLSRPKVVASSWSHYLRVQ 258
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4846.11964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVT8_ECTSI1.560e-8456.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4846contigH-paniculata_contig4846:4250..7375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_002100.1
Exons3
Model size2279
Cds size882
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4846.11964.1prot_H-paniculata_contig4846.11964.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4846 4419..6147 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930434.7790382-UTR-H-paniculata_contig4846:4249..44181622930434.7790382-UTR-H-paniculata_contig4846:4249..4418Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4846 4250..4418 +
1691481290.7918909-UTR-H-paniculata_contig4846:4249..44181691481290.7918909-UTR-H-paniculata_contig4846:4249..4418Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4846 4250..4418 +
1622930434.843487-UTR-H-paniculata_contig4846:6147..73751622930434.843487-UTR-H-paniculata_contig4846:6147..7375Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4846 6148..7375 +
1691481290.8357918-UTR-H-paniculata_contig4846:6147..73751691481290.8357918-UTR-H-paniculata_contig4846:6147..7375Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4846 6148..7375 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930434.7919037-CDS-H-paniculata_contig4846:4418..48951622930434.7919037-CDS-H-paniculata_contig4846:4418..4895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4846 4419..4895 +
1691481290.8037724-CDS-H-paniculata_contig4846:4418..48951691481290.8037724-CDS-H-paniculata_contig4846:4418..4895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4846 4419..4895 +
1622930434.8079455-CDS-H-paniculata_contig4846:5338..55061622930434.8079455-CDS-H-paniculata_contig4846:5338..5506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4846 5339..5506 +
1691481290.8134441-CDS-H-paniculata_contig4846:5338..55061691481290.8134441-CDS-H-paniculata_contig4846:5338..5506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4846 5339..5506 +
1622930434.8273036-CDS-H-paniculata_contig4846:5910..61471622930434.8273036-CDS-H-paniculata_contig4846:5910..6147Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4846 5911..6147 +
1691481290.8260777-CDS-H-paniculata_contig4846:5910..61471691481290.8260777-CDS-H-paniculata_contig4846:5910..6147Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4846 5911..6147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4846.11964.1

>prot_H-paniculata_contig4846.11964.1 ID=prot_H-paniculata_contig4846.11964.1|Name=mRNA_H-paniculata_contig4846.11964.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=294bp
MVKYEQGLDQRAGATSNTGLRLKVQGRDGKLHEFVVPPDRQEYYKNKILP
RLVSSLDALRLTPPVTINRPAEEFSLGSAGAFFGFNRDASNLVLTWLSPD
SWLELEGSCRAASTAVMNSMCWFSPGVMIGHSLRFRPDQRKVAYLRHRRA
VERVAKAFQDLRRFARSPDSVFNPGATLSEIYSAEQRTGVVFPDEARASF
TLFDGQARSTWLRAEGVIGGFKLLSLDQSVELMLEEACFRGALGKLEFVP
LADRRNSNAWLVAAVDDGRVCVVKPLSRPKIVARSWSGHLRVQ*
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mRNA from alignment at H-paniculata_contig4846:4250..7375+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4846.11964.1 ID=mRNA_H-paniculata_contig4846.11964.1|Name=mRNA_H-paniculata_contig4846.11964.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3126bp|location=Sequence derived from alignment at H-paniculata_contig4846:4250..7375+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCATCGGCAGTGCTGTTGCGCTTGTCTATGCACTGCAGCTGTACGATAAC
TGATGCTGTAAAAATTAATAGCAGACAAGGAAGATATTCATCTGTGGTGC
CGGTGTGGGGCACTACAAAGAACTGTGTACTAACACACGAGTCGATGGTA
AGCAAATAAACTAGCAGTCATGGTGAAATATGAGCAAGGACTAGATCAAC
GAGCTGGTGCAACTTCAAACACAGGTTTACGTCTCAAGGTTCAAGGGCGC
GACGGCAAGTTGCACGAGTTTGTCGTACCTCCCGATAGGCAGGAGTACTA
CAAGAACAAGATTCTGCCTCGATTAGTTTCATCGCTGGATGCGCTACGCC
TGACCCCTCCGGTGACGATTAATAGGCCAGCGGAGGAATTCTCGTTAGGG
TCTGCGGGGGCATTTTTTGGCTTTAATCGAGACGCTTCGAATTTGGTTTT
GACCTGGCTGAGCCCTGACAGTTGGTTGGAGCTGGAGGGCAGCTGCAGGG
CGGCCAGCACCGCAGTGATGAATTCAATGTGTTGGTTTTCGCCCGGTGTG
ATGATAGGACATTCACTGCGCTTTCGGCCAGATCAAAGGAAGGTGGCGTA
CCTGCGCCATCGGAGGGCCGTTGAACGGGTCGCAAAAGCTTTTCAGGTTC
GTTCGTGAAAATCTGAACAATCTGTGAAGCTGCAACCTGTTTTTCTCGGA
AGGTACAGATATATGCTGTAACGTTGTACGACCAGGTCCCTGATAGGTGT
GCTTGCAGTAAAAAAAATTGTGGTGTATGCTTAGGATATTGCTAACTATA
TAGTTGCTCTGTAGGACGCCGACCGTGCAACCTTAACCTATTCTCTGATT
CTATATTTTTGGTCTGTACGAATGTTCATGTTGTGGCCCACTTGTCAGCG
TCCTTAGCTCCGCCTGCAGTCTCGGTAATGGTCCAAGCTATGCAGGTATG
CCGGCAGATCTGCAACCAAAAAGACTGAACGCATCATGTGACAAACATTG
CATCGGTCAACCTGATGAAAACATTGCCCATCTTGTTTTGGATACCTGAT
GCATGCATCTTCCGTGGCATCTACTTTACGACATCAAAGGATCTGCGAAG
GTTTGCACGGTCCCCCGACAGCGTCTTTAACCCAGGTGCAACACTTTCTG
AAATCTACAGCGCGGAGCAGAGGACGGGAGTCGTGTTTCCCGATGAAGCG
AGGGCTTCCTTCACTCTCTTCGACGGCCAGGCTCGCTCTACTTGGCTGCG
AGCCGAGGTGCAGCGTGCCAAAGGGGATAATGCGATATAAAAGAACGAGT
TGAGAGATGGCGACTGACGGCGTGTCGTACTTAACGGTTGCCATGTTCGC
CTCACTGCTTAGGGTAATGTTGTTAAGACATACATACATTTACTTTGAAG
GTGCGAGTGAGAGTAACTGCTCTTTTGGTCTAGCTGTATCTTTCGCTGTT
TCGCCCTTGGTGGTTTTTGTTGAGGGGTTCTTGCCGCTGCGCGGTGAGTC
TTACCATACGTTTGCGTCGAGATGCTACAGCTGCGCGTGTTCCGTCAACG
CGATTGTGCAAACAAGTAGCCTACTCGTTATCGTGCCTGTCATCGCTCCA
CCGCTTGCTCAGTCGCCAAAATACATTCATCTGACACATTTACCTACTCC
CATCCATTCAGGGCGTCATTGGTGGGTTCAAGTTGCTTTCTCTGGACCAG
TCCGTGGAACTAATGTTGGAGGAGGCGTGTTTCCGAGGTGCTTTGGGTAA
GCTGGAGTTCGTGCCCCTTGCCGATCGAAGGAATAGTAATGCGTGGCTCG
TGGCAGCTGTTGACGACGGCAGAGTATGCGTGGTGAAACCGCTCAGCAGG
CCTAAGATCGTGGCTCGATCATGGTCAGGTCATCTGCGCGTACAGTAAGT
GTTATCGATTAGTCTCTTAGGTGCCATGCCTGTATATTTGTCGACGGGCC
TATGGTGGTGATGGCGATGTTGCCGGTGAGCCTTCTCGGAACATATTTTT
CTTGATCCCATGCTCTGGTAGTTTCGCTCCACTAACGGAAGAGCGTAGCA
AGCCCAAACATATGGGTAACGCGATGCACACGACTGCACTGGTGTAGCTG
TGGCAACCTACTAATAGTCGCGCTTCGTTCATATCCTGCCCCTCACCTTG
ATAAGTTCAACGATCGATGACTTTCGCTTTTTTTCGTGTGGTGCTTTTTG
GGATGCATGTGCGACGCAGAATGTTATTTATATGTGTATAGATGTGAACG
TGTGTAATATGTTCTACTTTGTATTTAATATAAGATGCATTGGACTATGC
TGTCGTTTTTTCCTTAGGTTCCCCCACTTACGGTGAGTTGTCTGTAACCC
GGCCGGAATTACTGGTATTATTTTAGTACGTATATAGTCACACTCCGTAA
CTACTGCAGTGGCAGTCAGTGGAGTTGGATACGCACGCGTTCTTTGGGAG
GCAAATGGTATCTACATTGTCCGGCCACTCTCTCAGGCCGTCACAGCGTG
GTGGCTCTCTTGTACAAAAGAGCATTATGTATACTGAGTTCAGTAGAAAG
CATACTGTGTCCAGACCCTGGTGAACATGGCACTTGTATATGCGTAGCTA
CAGATGAGACGGGCGCTCACGATCGGACGAGGTGTTTGGGAAATCTAGTA
GGTAACAGTGCTCGGTTTGTAAGTATCGATGGGAATAATTGTGTTGTGTA
TTGGCGAGAATGATCGAGAGGCAATGGCGTGTTAGTTATGAGGACTGTGT
GAATTCGGTAGGAGGCCCACAAGGCAATGGCCTTTTCATATATCGCTTTG
CGAGAACGCGAGAGGCCGTCGTACCTTTGTAGAGACTGCCATCGATACAT
TGCTGAACACCTCTGTGCGGAATAATACTTCATGATAGTTTCTATAGCGT
GACTCCATCATTTTTATTGGTCCATTCTTTTTTCTTGCCGGCACCTATCC
CAAACAACCTCTGTATAGATGGCAGCGTGTCCATTTGGGTGCCGTTCGGG
GAACGTCACGTCCAGGCGCCAACTGGTTGTCACATTTGGTCTGTTTGCAG
CTATTGCAAACACTTTCGATTTTAGTCATGCGCTCTGCTGAAACGGGCTT
CAAAGGTATATCCCTATCTCCCCCAT
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Coding sequence (CDS) from alignment at H-paniculata_contig4846:4250..7375+

>mRNA_H-paniculata_contig4846.11964.1 ID=mRNA_H-paniculata_contig4846.11964.1|Name=mRNA_H-paniculata_contig4846.11964.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1764bp|location=Sequence derived from alignment at H-paniculata_contig4846:4250..7375+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAAATATGAGCAAGGACTAGATCAACGAGCTGGTGCAACTTCAAA
CACAGGTTTACGTCTCAAGGTTCAAGGGCGCGACGGCAAGTTGCACGAGT
TTGTCGTACCTCCCGATAGGCAGGAGTACTACAAGAACAAGATTCTGCCT
CGATTAGTTTCATCGCTGGATGCGCTACGCCTGACCCCTCCGGTGACGAT
TAATAGGCCAGCGGAGGAATTCTCGTTAGGGTCTGCGGGGGCATTTTTTG
GCTTTAATCGAGACGCTTCGAATTTGGTTTTGACCTGGCTGAGCCCTGAC
AGTTGGTTGGAGCTGGAGGGCAGCTGCAGGGCGGCCAGCACCGCAGTGAT
GAATTCAATGTGTTGGTTTTCGCCCGGTGTGATGATAGGACATTCACTGC
GCTTTCGGCCAGATCAAAGGAAGGTGGCGTACCTGCGCCATCGGAGGGCC
GTTGAACGGGTCGCAAAAGCTTTTCAGATGGTGAAATATGAGCAAGGACT
AGATCAACGAGCTGGTGCAACTTCAAACACAGGTTTACGTCTCAAGGTTC
AAGGGCGCGACGGCAAGTTGCACGAGTTTGTCGTACCTCCCGATAGGCAG
GAGTACTACAAGAACAAGATTCTGCCTCGATTAGTTTCATCGCTGGATGC
GCTACGCCTGACCCCTCCGGTGACGATTAATAGGCCAGCGGAGGAATTCT
CGTTAGGGTCTGCGGGGGCATTTTTTGGCTTTAATCGAGACGCTTCGAAT
TTGGTTTTGACCTGGCTGAGCCCTGACAGTTGGTTGGAGCTGGAGGGCAG
CTGCAGGGCGGCCAGCACCGCAGTGATGAATTCAATGTGTTGGTTTTCGC
CCGGTGTGATGATAGGACATTCACTGCGCTTTCGGCCAGATCAAAGGAAG
GTGGCGTACCTGCGCCATCGGAGGGCCGTTGAACGGGTCGCAAAAGCTTT
TCAGGATCTGCGAAGGTTTGCACGGTCCCCCGACAGCGTCTTTAACCCAG
GTGCAACACTTTCTGAAATCTACAGCGCGGAGCAGAGGACGGGAGTCGTG
TTTCCCGATGAAGCGAGGGCTTCCTTCACTCTCTTCGACGGCCAGGCTCG
CTCTACTTGGCTGCGAGCCGAGGATCTGCGAAGGTTTGCACGGTCCCCCG
ACAGCGTCTTTAACCCAGGTGCAACACTTTCTGAAATCTACAGCGCGGAG
CAGAGGACGGGAGTCGTGTTTCCCGATGAAGCGAGGGCTTCCTTCACTCT
CTTCGACGGCCAGGCTCGCTCTACTTGGCTGCGAGCCGAGGGCGTCATTG
GTGGGTTCAAGTTGCTTTCTCTGGACCAGTCCGTGGAACTAATGTTGGAG
GAGGCGTGTTTCCGAGGTGCTTTGGGTAAGCTGGAGTTCGTGCCCCTTGC
CGATCGAAGGAATAGTAATGCGTGGCTCGTGGCAGCTGTTGACGACGGCA
GAGTATGCGTGGTGAAACCGCTCAGCAGGCCTAAGATCGTGGCTCGATCA
TGGTCAGGTCATCTGCGCGTACAGTAAGGCGTCATTGGTGGGTTCAAGTT
GCTTTCTCTGGACCAGTCCGTGGAACTAATGTTGGAGGAGGCGTGTTTCC
GAGGTGCTTTGGGTAAGCTGGAGTTCGTGCCCCTTGCCGATCGAAGGAAT
AGTAATGCGTGGCTCGTGGCAGCTGTTGACGACGGCAGAGTATGCGTGGT
GAAACCGCTCAGCAGGCCTAAGATCGTGGCTCGATCATGGTCAGGTCATC
TGCGCGTACAGTAA
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