mRNA_H-paniculata_contig4845.11962.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4845.11962.1
Unique NamemRNA_H-paniculata_contig4845.11962.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4845.11962.1 vs. uniprot
Match: D7G4A3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4A3_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.920e-10
Identity = 31/52 (59.62%), Postives = 42/52 (80.77%), Query Frame = 3 
Query:  369 QGLWSTMTLVLRAKSTKYEVQAHSRGPIFIVPEEFSEKHLVLFLAENLLGFS 524
            +GLWST+ LVLRA+S  YEVQ HS GP+ + PE+FSE++LV FL+E LL ++
Sbjct:  163 RGLWSTVVLVLRARSDSYEVQVHSGGPVLVFPEKFSERNLVRFLSEVLLSYT 214
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BLAST of mRNA_H-paniculata_contig4845.11962.1 vs. uniprot
Match: A0A6H5JN32_9PHAE (DUF4460 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN32_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.370e-9
Identity = 31/52 (59.62%), Postives = 42/52 (80.77%), Query Frame = 3 
Query:  369 QGLWSTMTLVLRAKSTKYEVQAHSRGPIFIVPEEFSEKHLVLFLAENLLGFS 524
            +GLWST+ LVLRA+S  YEVQ HS GP+ + PE+FSE++LV FL+E LL ++
Sbjct:  346 RGLWSTVVLVLRARSESYEVQVHSGGPVLVFPEKFSERNLVRFLSEVLLSYT 397
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BLAST of mRNA_H-paniculata_contig4845.11962.1 vs. uniprot
Match: D7G1D8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1D8_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.610e-9
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 3 
Query:  369 QGLWSTMTLVLRAKSTKYEVQAHSRGPIFIVPEEFSEKHLVLFLAENLLGFS 524
            +GLWST+ LVLRA+S  YEVQ HS GP+ + PE+FSE+ LV FL+E LL ++
Sbjct:  282 RGLWSTVVLVLRARSESYEVQVHSGGPVLVFPEKFSERSLVRFLSEVLLSYT 333
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4845.11962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4A3_ECTSI1.920e-1059.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JN32_9PHAE1.370e-959.62DUF4460 domain-containing protein n=1 Tax=Ectocarp... [more]
D7G1D8_ECTSI1.610e-959.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4845contigH-paniculata_contig4845:10868..12498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_001930.1
Exons1
Model size1631
Cds size171
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4845.11962.1prot_H-paniculata_contig4845.11962.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4845 11224..11394 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930434.6267607-UTR-H-paniculata_contig4845:10867..112231622930434.6267607-UTR-H-paniculata_contig4845:10867..11223Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4845 10868..11223 +
1691481290.7054935-UTR-H-paniculata_contig4845:10867..112231691481290.7054935-UTR-H-paniculata_contig4845:10867..11223Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4845 10868..11223 +
1622930434.6625032-UTR-H-paniculata_contig4845:11394..124981622930434.6625032-UTR-H-paniculata_contig4845:11394..12498Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4845 11395..12498 +
1691481290.7279072-UTR-H-paniculata_contig4845:11394..124981691481290.7279072-UTR-H-paniculata_contig4845:11394..12498Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4845 11395..12498 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930434.6443758-CDS-H-paniculata_contig4845:11223..113941622930434.6443758-CDS-H-paniculata_contig4845:11223..11394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4845 11224..11394 +
1691481290.7168646-CDS-H-paniculata_contig4845:11223..113941691481290.7168646-CDS-H-paniculata_contig4845:11223..11394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4845 11224..11394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4845.11962.1

>prot_H-paniculata_contig4845.11962.1 ID=prot_H-paniculata_contig4845.11962.1|Name=mRNA_H-paniculata_contig4845.11962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
MRFRQGLWSTMTLVLRAKSTKYEVQAHSRGPIFIVPEEFSEKHLVLFLAE
NLLGFS*
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mRNA from alignment at H-paniculata_contig4845:10868..12498+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4845.11962.1 ID=mRNA_H-paniculata_contig4845.11962.1|Name=mRNA_H-paniculata_contig4845.11962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1631bp|location=Sequence derived from alignment at H-paniculata_contig4845:10868..12498+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTTGATTGTACACCAGACAAAACATTTAGCCTAGGTATAACGACAGACC
CGTTTGCAAGCAGTCTACACCAAGGTTTCTATTGACGGTGTGGTGTTTTT
TCAAGATGTAGACGGATGTTTTTTCAAGATGTAGACGGATCTCTACCCCG
GACAGTCACGGAAATGTCATCGAAATAAAAACATACAAAATCAAATTCAC
TGTACGCCCATCCCCTCGAAATTTCAAGTACTAACTCCTAAAATTGGCGT
GAGAATGACCCGGTCAAGGGTTTCGCCTGTTTAACTGGGTCGTATCCTCT
CTCTTCCCCTTCTAACTGCCGCTTGCCTCTTGCGGTGTTTTCACGCGGTC
GCATCTATGCGCTTTCGTCAGGGCTTATGGAGCACGATGACGCTGGTACT
ACGGGCCAAGTCGACCAAATACGAAGTGCAGGCGCACTCCCGCGGTCCAA
TTTTTATTGTACCGGAGGAATTTTCCGAGAAACACCTGGTTTTGTTTTTA
GCCGAGAATCTTTTAGGATTCAGCTGATTTCTAGTGTTTGAGAAAGACAA
GAAAAAAGCAGGAAGGGAGAAGAGGAAGTTGTGCGGGCGCGGGAGAAGAC
TATGTTTTCGTCGTAATAGGACAGTTGAGTTACGGTGCGATTTTGATCCA
CTGCTCCATTGTTGAAGTAATTTTGAAGGCATGTCCTCGTCATCTGTTCA
CACATGTCGAAAGTACCGACCCTTTTGGCACCCTTTCAAGGTCCCCTCGA
TGTACCCTGGCAAGGCTAGAGGCGATGGCCCTAGCAGGGTCTTATCCAGT
CGCTGAAACATGACAACGAGGGGGAACCCTTTTGACAATTGTGCCTAAAG
GGTCCGCAGCTTGCCACCCTTCTGTGGAGAAACAGGGAGTTAGTCAGTAC
ACCCTTGCAAGGTTGATGTCAGCATTTTCTTGACAAGGTGTCGTGATCGT
GATATCCTGTAATGGTGCGTACAGTGTTTGATAATGCTGGGGTTGCACAA
TCATGTCACCTTGTTAGGCTTAGGGGGCCGATGTCCCTGTCATAGTTACG
TCGTCTTGTAACACTGGCACGGTTAGAGGGGTCGATGACACTGTCATAGT
TACGCTGTCTTGTAGCACTGGCACGGTTAGAGGGATCGATGACCCTGTCA
TAGTTACGCCGTCTTGTAGTACTAGCAGGGTTAGAGGGTTCGATGACACT
GTAAGTGTGGAATCGCATTGTAACGTTGATAGGTTGGGTCCGCCTCATAC
CTTTGTCAGGGTATCGAGCAGGCCTAACCCTTGCAGGGTTTATCGAACAT
TGACATGGCAAGGAGGATCAAGCAGCACACCTACAGGGTAGCTACAACGC
GCCACCTTTGAGCAGGGTTGGGTTTAGTGTGCAATTTGCTCAGGTTGTAC
CTGTCTACACCTCAACAAGGATGTCAGGGCACACGAAAGCTGTCACAGGC
GGTTGATAGCTCTCATATCAACCTCATCCACGGTGTAAACGGTACCTTGG
CACGTGCGTGCACCCTTCTTACTCCCTACATCCCATAAGTATGCAACGTT
ATGGTTTCTCATTTTTTGTGTCGACCGTTTCTCTACGAAAACGAAGAGTT
TTTCGGTCATCTATGGCTTGAATTGAACCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig4845:10868..12498+

>mRNA_H-paniculata_contig4845.11962.1 ID=mRNA_H-paniculata_contig4845.11962.1|Name=mRNA_H-paniculata_contig4845.11962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig4845:10868..12498+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCTTTCGTCAGGGCTTATGGAGCACGATGACGCTGGTACTACGGGC
CAAGTCGACCAAATACGAAGTGCAGGCGCACTCCCGCGGTCCAATTTTTA
TTGTACCGGAGGAATTTTCCGAGAAACACCTGGTTTTGTTTTTAGCCGAG
AATCTTTTAGGATTCAGCTGAATGCGCTTTCGTCAGGGCTTATGGAGCAC
GATGACGCTGGTACTACGGGCCAAGTCGACCAAATACGAAGTGCAGGCGC
ACTCCCGCGGTCCAATTTTTATTGTACCGGAGGAATTTTCCGAGAAACAC
CTGGTTTTGTTTTTAGCCGAGAATCTTTTAGGATTCAGCTGA
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