mRNA_H-paniculata_contig4830.11936.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4830.11936.1
Unique NamemRNA_H-paniculata_contig4830.11936.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4830.11936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4830contigH-paniculata_contig4830:4918..5251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size335
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930431.0915356-CDS-H-paniculata_contig4830:4917..52291622930431.0915356-CDS-H-paniculata_contig4830:4917..5229Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4830 4918..5229 +
1691481289.184407-CDS-H-paniculata_contig4830:4917..52291691481289.184407-CDS-H-paniculata_contig4830:4917..5229Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4830 4918..5229 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930431.1033995-UTR-H-paniculata_contig4830:5229..52511622930431.1033995-UTR-H-paniculata_contig4830:5229..5251Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4830 5230..5251 +
1691481289.1951544-UTR-H-paniculata_contig4830:5229..52511691481289.1951544-UTR-H-paniculata_contig4830:5229..5251Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4830 5230..5251 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4830.11936.1prot_H-paniculata_contig4830.11936.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4830 4918..5229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4830.11936.1

>prot_H-paniculata_contig4830.11936.1 ID=prot_H-paniculata_contig4830.11936.1|Name=mRNA_H-paniculata_contig4830.11936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
DSFGHRYTWYIKRFFYFSNAISKRFPRLPSGAWVLHPTERWRRAVSGRSR
TFFLVCTRLISTTKSIREPRTTQSINNFTTKYRLQCYSGNCTRSIQTHQY
THL*
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mRNA from alignment at H-paniculata_contig4830:4918..5251+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4830.11936.1 ID=mRNA_H-paniculata_contig4830.11936.1|Name=mRNA_H-paniculata_contig4830.11936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=334bp|location=Sequence derived from alignment at H-paniculata_contig4830:4918..5251+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTCCTTTGGACATCGTTATACATGGTATATAAAACGATTCTTTTATTT
CTCCAACGCAATAAGTAAACGGTTTCCAAGACTGCCATCAGGTGCATGGG
TACTGCACCCCACGGAAAGGTGGCGTAGGGCAGTGAGCGGTCGTTCGAGA
ACATTTTTCCTCGTTTGTACTCGATTGATTTCCACAACAAAATCTATACG
CGAGCCAAGGACGACTCAGAGCATAAACAATTTCACGACAAAATACAGAC
TGCAGTGTTATAGTGGTAACTGTACCCGCAGTATTCAAACTCATCAATAT
ACACATCTATAGCTATTTGCTGAAAACCTGCTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4830:4918..5251+

>mRNA_H-paniculata_contig4830.11936.1 ID=mRNA_H-paniculata_contig4830.11936.1|Name=mRNA_H-paniculata_contig4830.11936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig4830:4918..5251+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTCCTTTGGACATCGTTATACATGGTATATAAAACGATTCTTTTATTT
CTCCAACGCAATAAGTAAACGGTTTCCAAGACTGCCATCAGGTGCATGGG
TACTGCACCCCACGGAAAGGTGGCGTAGGGCAGTGAGCGGTCGTTCGAGA
ACATTTTTCCTCGTTTGTACTCGATTGATTTCCACAACAAAATCTATACG
CGAGCCAAGGACGACTCAGAGCATAAACAATTTCACGACAAAATACAGAC
TGCAGTGTTATAGTGGTAACTGTACCCGCAGTATTCAAACTCATCAATAT
ACACATCTATAGGATTCCTTTGGACATCGTTATACATGGTATATAAAACG
ATTCTTTTATTTCTCCAACGCAATAAGTAAACGGTTTCCAAGACTGCCAT
CAGGTGCATGGGTACTGCACCCCACGGAAAGGTGGCGTAGGGCAGTGAGC
GGTCGTTCGAGAACATTTTTCCTCGTTTGTACTCGATTGATTTCCACAAC
AAAATCTATACGCGAGCCAAGGACGACTCAGAGCATAAACAATTTCACGA
CAAAATACAGACTGCAGTGTTATAGTGGTAACTGTACCCGCAGTATTCAA
ACTCATCAATATACACATCTATAG
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