mRNA_H-paniculata_contig48256.11923.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48256.11923.1
Unique NamemRNA_H-paniculata_contig48256.11923.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig48256.11923.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 1.470e-63
Identity = 121/254 (47.64%), Postives = 164/254 (64.57%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLSDK----------PVRSAVGSLIWLSGMTRPDIASAVLAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYPDKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQEAKAALFTRAVL 729
            I +  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L  +F T   GE +W+ GCA  RD+  G   +S            P R A+GS++W+S  +RPD++ AV AVAR AH P  RHW A+ KI+ YLK T+DLG+ ++RG  L L+VYVDA Y D  + RRSV+G+A  +GG+VVS  S TQ  V+LS++EAEY+A  +  K ALF RAVL
Sbjct:  678 IAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMGEEWPAREAIGSMVWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVAGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVL 929          
BLAST of mRNA_H-paniculata_contig48256.11923.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 1.180e-57
Identity = 121/282 (42.91%), Postives = 162/282 (57.45%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLS--------------------------------------DKPVRSAVGSLIWLSGMTRPDIASAVLAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYPDKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQEAKAALFTRAVL 729
            ++++ +A+YGLKQ+GR W      +LV++ G  Q ++DPCVFR   +G V  I+ ++VDD++  G   + + L  +LR        GE  WY GCA  RD+  G   LS                                      DKPVR A+G L+W +  TRPDIA+A+ AV R AH PT R WKA+V+I+SYL  T DLG+ + RG  L+L VYVDA Y D+   RRSV+G+AV +GG+VVS  S TQ  V+LSTSEAEY+A  +  K ALF RAVL
Sbjct:  877 VLKVERALYGLKQSGREWGFEAANILVDS-GYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNAELGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVL 1157          
BLAST of mRNA_H-paniculata_contig48256.11923.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 1.260e-57
Identity = 121/282 (42.91%), Postives = 162/282 (57.45%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLS--------------------------------------DKPVRSAVGSLIWLSGMTRPDIASAVLAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYPDKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQEAKAALFTRAVL 729
            ++++ +A+YGLKQ+GR W      +LV++ G  Q ++DPCVFR   +G V  I+ ++VDD++  G   + + L  +LR        GE  WY GCA  RD+  G   LS                                      DKPVR A+G L+W +  TRPDIA+A+ AV R AH PT R WKA+V+I+SYL  T DLG+ + RG  L+L VYVDA Y D+   RRSV+G+AV +GG+VVS  S TQ  V+LSTSEAEY+A  +  K ALF RAVL
Sbjct: 1430 VLKVERALYGLKQSGREWGFEAANILVDS-GYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNADLGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVL 1710          
BLAST of mRNA_H-paniculata_contig48256.11923.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 4.260e-55
Identity = 118/283 (41.70%), Postives = 153/283 (54.06%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVLAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGR--DLNLSVYVDADYPDKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQEAKAALFTRAV 726
            IV+LNK++YGLKQA R W   L   L+  +G  Q  +D CVFRL + G V + L VHVDD+   G+  +CD     L         G+L+WY GC + RD   G                                      DE++   P R  +GSL+WL+  TRPDIA+AV AVAR   +P + HW+A + I+ Y+ RT DLG+ F RG    L++ V+VDADY  K+  RRSVSG  VM GG  +S  S TQ CVTLST+EAEYV++A   K  LF R V
Sbjct:   68 IVKLNKSLYGLKQASRQWHSHLARCLIC-LGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQV 349          
BLAST of mRNA_H-paniculata_contig48256.11923.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 1.200e-53
Identity = 118/283 (41.70%), Postives = 153/283 (54.06%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVLAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGR--DLNLSVYVDADYPDKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQEAKAALFTRAV 726
            IV+LNK++YGLKQA R W   L   L+  +G  Q  +D CVFRL + G V + L VHVDD+   G+  +CD     L         G+L+WY GC + RD   G                                      DE++   P R  +GSL+WL+  TRPDIA+AV AVAR   +P + HW+A + I+ Y+ RT DLG+ F RG    L++ V+VDADY  K+  RRSVSG  VM GG  +S  S TQ CVTLST+EAEYV++A   K  LF R V
Sbjct:  242 IVKLNKSLYGLKQASRQWHSHLARCLIC-LGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQV 523          
BLAST of mRNA_H-paniculata_contig48256.11923.1 vs. uniprot
Match: A0A6H5KLY3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY3_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 1.020e-52
Identity = 109/245 (44.49%), Postives = 151/245 (61.63%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDI--VRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVLAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYPDKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQEAKAALFTRAVL 729
            IV+  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG            R + Q+T      ++      D+   R +E   + PVR A+GS++W+S  +RPD++ AV AV R AH P  RHW A+ KI+ YL  T+ LG+ ++RG  L L+VYVDA Y D  + RRSVSG+A  +GG+VVS  S  Q  V+L ++EAEY+A  +  K ALF RAVL
Sbjct:   45 IVKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGM---------VRRFDVQSTS-----HIPATPGADLGPKRDNEKGGEWPVREAIGSMVWVSTFSRPDVSFAVPAVVRHAHAPAKRHWDAIQKILGYLTGTRYLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKMQTIVSLYSTEAEYIAAGEGVKEALFVRAVL 273          
BLAST of mRNA_H-paniculata_contig48256.11923.1 vs. uniprot
Match: A0A6H5JZ67_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ67_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 1.150e-52
Identity = 111/244 (45.49%), Postives = 155/244 (63.52%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVLAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYPDKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQEAKAALFTRAVL 729
            IV+  +A+ GLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ V++DD++VAG    C  L A+L  +F T   GE + + GCA  RD+    E  + K  ++A+    W+S  +RPD++ AV AV R AH    RHW A+ K++SYLK T+DLG+ ++R   L ++VYV+A Y D  +  RSVSG+A  +GG+VVS  S TQ  V+LS++EAEY+A  +  K ALF RAVL
Sbjct:  265 IVKAERAIRGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVVYLDDILVAGSDEDCKGLLASLNKKFPTKNLGECERFDGCAIERDV----ESTTLKISQTAI---TWVSTCSRPDVSFAVRAVERHAHALAKRHWDAIRKVLSYLKETRDLGITYQRRSGLGMAVYVNASYVDTED-NRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAGGEGVKEALFVRAVL 499          
BLAST of mRNA_H-paniculata_contig48256.11923.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 3.610e-52
Identity = 118/283 (41.70%), Postives = 153/283 (54.06%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVLAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGR--DLNLSVYVDADYPDKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQEAKAALFTRAV 726
            IV+LNK++YGLKQA R W   L   L+  +G  Q  +D CVFRL + G V + L VHVDD+   G+  +CD     L         G+L+WY GC + RD   G                                      DE++   P R  +GSL+WL+  TRPDIA+AV AVAR   +P + HW+A + I+ Y+ RT DLG+ F RG    L++ V+VDADY  K+  RRSVSG  VM GG  +S  S TQ CVTLST+EAEYV++A   K  LF R V
Sbjct:  763 IVKLNKSLYGLKQASRQWHSHLARCLIC-LGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQV 1044          
BLAST of mRNA_H-paniculata_contig48256.11923.1 vs. uniprot
Match: A0A6H5KFN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN5_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 4.030e-52
Identity = 102/228 (44.74%), Postives = 144/228 (63.16%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDIVRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVLAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYPDKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVA 684
            I +  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+     +      +   +    G        R DE+  + PVR A+GS++W+S  +RPD++ AV AVAR AH P  R+W A+ KI+ YLK T+DLG+ ++RG  L L+VYVDA Y D  + RRSVSG+A  +GG+V+S  S TQ  V+LS++EAEY+A
Sbjct:  178 IAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEECQCMVERFDVKSTSRIPATPGADLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRNWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVLSHGSKTQSIVSLSSTEAEYIA 401          
BLAST of mRNA_H-paniculata_contig48256.11923.1 vs. uniprot
Match: A0A6H5KW89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW89_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 5.930e-52
Identity = 109/279 (39.07%), Postives = 152/279 (54.48%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVLAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYPDKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQEAKAALFTR 720
            +V++ +A+Y LKQ+GR W     + L+ N G  Q + DPCVFR   +G V  ++ ++VDD++VA    + + LFA+L  EF     GE  WY GCA   D+  G                                      DE   DKPVR A+G L+W   +TRPDIA  +  + + AH+PT R W A+V+I+SYL  TKD G+ + RG  L+ SV+VDA Y D    RRS +G+AV +GG+VV A++ TQ     STSEAE++A  +  K ALF R
Sbjct:    5 VVKVERALYRLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKEFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIDSMLQRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK-LTRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYLNFTKDFGITYVRGSGLDRSVFVDASYADNEVDRRSTTGLAVTVGGTVVCASTKTQPLTAQSTSEAEHMAAGEGVKEALFVR 281          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48256.11923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTV6_9PHAE1.470e-6347.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JKS3_9PHAE1.180e-5742.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE1.260e-5742.91Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLN0_9PHAE4.260e-5541.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE1.200e-5341.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KLY3_9PHAE1.020e-5244.49Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZ67_9PHAE1.150e-5245.49Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE3.610e-5241.70Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5KFN5_9PHAE4.030e-5244.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW89_9PHAE5.930e-5239.07Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48256contigH-paniculata_contig48256:1..843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score134.8
Seed ortholog evalue5.2e-29
Seed eggNOG ortholog6334.EFV48939
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,40FC4@6231,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelNematoda
Best eggNOG OGNA|NA|NA
Exons2
Model size729
Cds size708
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48256.11923.1prot_H-paniculata_contig48256.11923.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48256 22..843 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930429.2159111-UTR-H-paniculata_contig48256:0..211622930429.2159111-UTR-H-paniculata_contig48256:0..21Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48256 1..21 +
1691481288.1097238-UTR-H-paniculata_contig48256:0..211691481288.1097238-UTR-H-paniculata_contig48256:0..21Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48256 1..21 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930429.233342-CDS-H-paniculata_contig48256:21..3091622930429.233342-CDS-H-paniculata_contig48256:21..309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48256 22..309 +
1691481288.120458-CDS-H-paniculata_contig48256:21..3091691481288.120458-CDS-H-paniculata_contig48256:21..309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48256 22..309 +
1622930429.250653-CDS-H-paniculata_contig48256:423..8431622930429.250653-CDS-H-paniculata_contig48256:423..843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48256 424..843 +
1691481288.1297338-CDS-H-paniculata_contig48256:423..8431691481288.1297338-CDS-H-paniculata_contig48256:423..843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48256 424..843 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48256.11923.1

>prot_H-paniculata_contig48256.11923.1 ID=prot_H-paniculata_contig48256.11923.1|Name=mRNA_H-paniculata_contig48256.11923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=236bp
MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVH
VDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDIVRGDEDL
SDKPVRSAVGSLIWLSGMTRPDIASAVLAVARQAHNPTDRHWKAVVKIIS
YLKRTKDLGLVFERGRDLNLSVYVDADYPDKSNWRRSVSGVAVMLGGSVV
SATSTTQHCVTLSTSEAEYVAMAQEAKAALFTRAVL
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mRNA from alignment at H-paniculata_contig48256:1..843+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48256.11923.1 ID=mRNA_H-paniculata_contig48256.11923.1|Name=mRNA_H-paniculata_contig48256.11923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=843bp|location=Sequence derived from alignment at H-paniculata_contig48256:1..843+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGTAAGGCTGAATAAGGCTATGTATGGGCTCAAGCAGGCAGGACGGAT GTGGTCAAAGCGCCTTGTAGAAGTACTCGTAAACAACGTCGGCATGACGC AATCCAAGTCTGACCCTTGTGTGTTTAGGCTCGAGAAAAATGGGGTGGTA GATATGATTCTGTGTGTTCATGTAGATGATGTAATTGTTGCTGGTAAAAG TGTGAAGTGCGATTCTCTGTTTGCAGCGTTGAGGGCGGAGTTCCAAACCA CGAGAGGCGAACTCAAGTGGTACCTGGGTTGTGCATTTTGGCGTGACATA GTGAGGGGAGTTGTCCGCATCACGCAACGGACATTCGTTGATACTGTCGT TAAACGCTTCGACGTGGAAACCGAGTCTAACCTTCCTGCGTCTCAGCAGG CAGATCTTGGGCCTAGGAGGGAGGATGAGGATTTGTCTGACAAGCCTGTG CGCTCGGCTGTTGGGAGTTTGATATGGCTAAGTGGTATGACGAGACCTGA CATAGCCAGTGCAGTACTGGCAGTAGCGAGGCAAGCGCACAATCCGACAG ATAGGCACTGGAAAGCAGTGGTAAAGATCATCTCGTATCTTAAGAGAACA AAAGACTTGGGGCTAGTGTTCGAAAGGGGTAGAGATCTTAATTTGTCAGT TTATGTAGACGCAGATTATCCGGATAAGTCCAACTGGAGGCGTTCAGTTT CAGGCGTGGCAGTAATGTTAGGGGGGAGTGTAGTGAGCGCTACCAGCACG ACACAACACTGTGTGACTCTTTCCACCAGTGAGGCAGAGTACGTAGCTAT GGCGCAAGAGGCTAAGGCAGCACTTTTCACGAGAGCTGTACTA
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Coding sequence (CDS) from alignment at H-paniculata_contig48256:1..843+

>mRNA_H-paniculata_contig48256.11923.1 ID=mRNA_H-paniculata_contig48256.11923.1|Name=mRNA_H-paniculata_contig48256.11923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at H-paniculata_contig48256:1..843+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATGGGCTCAAGCAGGCAGGACGGATGTGGTCAAAGCGCCTTGTAGA
AGTACTCGTAAACAACGTCGGCATGACGCAATCCAAGTCTGACCCTTGTG
TGTTTAGGCTCGAGAAAAATGGGGTGGTAGATATGATTCTGTGTGTTCAT
GTAGATGATGTAATTGTTGCTGGTAAAAGTGTGAAGTGCGATTCTCTGTT
TGCAGCGTTGAGGGCGGAGTTCCAAACCACGAGAGGCGAACTCAAGTGGT
ACCTGGGTTGTGCATTTTGGCGTGACATAGTGAGGGGAATGTATGGGCTC
AAGCAGGCAGGACGGATGTGGTCAAAGCGCCTTGTAGAAGTACTCGTAAA
CAACGTCGGCATGACGCAATCCAAGTCTGACCCTTGTGTGTTTAGGCTCG
AGAAAAATGGGGTGGTAGATATGATTCTGTGTGTTCATGTAGATGATGTA
ATTGTTGCTGGTAAAAGTGTGAAGTGCGATTCTCTGTTTGCAGCGTTGAG
GGCGGAGTTCCAAACCACGAGAGGCGAACTCAAGTGGTACCTGGGTTGTG
CATTTTGGCGTGACATAGTGAGGGGAGATGAGGATTTGTCTGACAAGCCT
GTGCGCTCGGCTGTTGGGAGTTTGATATGGCTAAGTGGTATGACGAGACC
TGACATAGCCAGTGCAGTACTGGCAGTAGCGAGGCAAGCGCACAATCCGA
CAGATAGGCACTGGAAAGCAGTGGTAAAGATCATCTCGTATCTTAAGAGA
ACAAAAGACTTGGGGCTAGTGTTCGAAAGGGGTAGAGATCTTAATTTGTC
AGTTTATGTAGACGCAGATTATCCGGATAAGTCCAACTGGAGGCGTTCAG
TTTCAGGCGTGGCAGTAATGTTAGGGGGGAGTGTAGTGAGCGCTACCAGC
ACGACACAACACTGTGTGACTCTTTCCACCAGTGAGGCAGAGTACGTAGC
TATGGCGCAAGAGGCTAAGGCAGCACTTTTCACGAGAGCTGTACTAGATG
AGGATTTGTCTGACAAGCCTGTGCGCTCGGCTGTTGGGAGTTTGATATGG
CTAAGTGGTATGACGAGACCTGACATAGCCAGTGCAGTACTGGCAGTAGC
GAGGCAAGCGCACAATCCGACAGATAGGCACTGGAAAGCAGTGGTAAAGA
TCATCTCGTATCTTAAGAGAACAAAAGACTTGGGGCTAGTGTTCGAAAGG
GGTAGAGATCTTAATTTGTCAGTTTATGTAGACGCAGATTATCCGGATAA
GTCCAACTGGAGGCGTTCAGTTTCAGGCGTGGCAGTAATGTTAGGGGGGA
GTGTAGTGAGCGCTACCAGCACGACACAACACTGTGTGACTCTTTCCACC
AGTGAGGCAGAGTACGTAGCTATGGCGCAAGAGGCTAAGGCAGCACTTTT
CACGAGAGCTGTACTA
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