mRNA_H-paniculata_contig48229.11920.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48229.11920.1
Unique NamemRNA_H-paniculata_contig48229.11920.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig48229.11920.1 vs. uniprot
Match: D8LGP8_ECTSI (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGP8_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.030e-28
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 1
Query:    1 PLVMCHGYGMGVGGWHMNLPTLMARHHVFAKDWLGCGLSARPKWELEGVTETEEFFVDSLER 186
            P+V+CHGYGMGVGGWH+NL  L A  HV AKDWLGCGLS+RP+W+LEGV ETE FFVDSLER
Sbjct:  137 PVVLCHGYGMGVGGWHLNLGELTASTHVMAKDWLGCGLSSRPRWDLEGVKETEAFFVDSLER 198          
BLAST of mRNA_H-paniculata_contig48229.11920.1 vs. uniprot
Match: A0A397TXT8_9GLOM (Alpha/Beta hydrolase protein n=5 Tax=Gigaspora TaxID=4873 RepID=A0A397TXT8_9GLOM)

HSP 1 Score: 63.5 bits (153), Expect = 4.080e-10
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 1
Query:    4 LVMCHGYGMGVGGWHMNLPTL--MARHHVFAKDWLGCGLSARPKWEL------EGVTETEEFFVDSLER 186
            LV+CHGYG G+G ++ N   L  +    +++ DWLG G S+RPK+ +      E + ETE+FFVDSLE+
Sbjct:  149 LVICHGYGAGLGFFYRNYHDLSQVPGWRIYSIDWLGMGRSSRPKFTIKSHTFDESIEETEKFFVDSLEK 217          
BLAST of mRNA_H-paniculata_contig48229.11920.1 vs. uniprot
Match: A0A8H7SWT5_9FUNG (AB hydrolase-1 domain-containing protein n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7SWT5_9FUNG)

HSP 1 Score: 63.2 bits (152), Expect = 5.620e-10
Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 1
Query:    4 LVMCHGYGMGVGGWHMNLPTLMARH--HVFAKDWLGCGLSARPKWELEG---------VTETEEFFVDSLE 183
            LVMCHGYG G+G ++ N  TL  +    +F+ DWLG G S+RPKW L           V + EE FV+SLE
Sbjct:  129 LVMCHGYGAGLGFFYRNYQTLSQQPGWRIFSIDWLGMGNSSRPKWTLNKKSNQTWDQIVDDVEEHFVESLE 199          
BLAST of mRNA_H-paniculata_contig48229.11920.1 vs. uniprot
Match: A0A8H7RB28_9FUNG (AB hydrolase-1 domain-containing protein n=6 Tax=Mucoraceae TaxID=34489 RepID=A0A8H7RB28_9FUNG)

HSP 1 Score: 62.4 bits (150), Expect = 1.050e-9
Identity = 33/71 (46.48%), Postives = 41/71 (57.75%), Query Frame = 1
Query:    4 LVMCHGYGMGVGGWHMNLPTLMARH--HVFAKDWLGCGLSARPKWEL---------EGVTETEEFFVDSLE 183
            LVMCHGYG G+G ++ NL  +       VFA DWLG   S+RPKW L         + V+  EE FV+SLE
Sbjct:  126 LVMCHGYGAGLGFFYRNLENISQEKGWRVFALDWLGMARSSRPKWTLTKSSSQTWDDIVSNVEEHFVESLE 196          
BLAST of mRNA_H-paniculata_contig48229.11920.1 vs. uniprot
Match: A0A433PJD6_9FUNG (Alpha/Beta hydrolase protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PJD6_9FUNG)

HSP 1 Score: 62.0 bits (149), Expect = 1.450e-9
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    4 LVMCHGYGMGVGGWHMNLPTL--MARHHVFAKDWLGCGLSARPKWEL--------EGVT-ETEEFFVDSLE 183
            LVMCHGYG G+G ++ N  +L  ++   ++A DW+G G S+RPKW +        E +T ETE  FV+SLE
Sbjct:  191 LVMCHGYGAGLGFFYRNYHSLSQVSGWRIYAIDWIGMGRSSRPKWSIHKKKGQSWEDITRETESHFVESLE 261          
BLAST of mRNA_H-paniculata_contig48229.11920.1 vs. uniprot
Match: A0A1Y2FV89_PROLT (Alpha/Beta hydrolase protein (Fragment) n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2FV89_PROLT)

HSP 1 Score: 61.6 bits (148), Expect = 1.900e-9
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    4 LVMCHGYGMGVGGWHMNLP----TLMARHHVFAKDWLGCGLSARPKWELEG------VTETEEFFVDSLER 186
            +VM HGYG G+G +  N      +L+ R+  FA DWLG GLS+RP + +        +TE+E FF+DSLE 
Sbjct:   86 IVMLHGYGAGLGFYFRNFDGLTKSLVNRYDFFALDWLGMGLSSRPPFRVRAKDAASKITESESFFLDSLEE 156          
BLAST of mRNA_H-paniculata_contig48229.11920.1 vs. uniprot
Match: A0A1X2HM64_SYNRA (Alpha/Beta hydrolase protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HM64_SYNRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.960e-9
Identity = 32/71 (45.07%), Postives = 42/71 (59.15%), Query Frame = 1
Query:    4 LVMCHGYGMGVGGWHMNLPTL--MARHHVFAKDWLGCGLSARPKWEL---------EGVTETEEFFVDSLE 183
            LVMCHGYG G+G ++ N   L  M    V++ DWLG G S+RPKW +         E + E E+ FV+SLE
Sbjct:  121 LVMCHGYGAGLGFFYRNYGALGTMPGWRVYSIDWLGMGRSSRPKWTIKKKSSQSWDEIIDEVEDHFVESLE 191          
BLAST of mRNA_H-paniculata_contig48229.11920.1 vs. uniprot
Match: A0A1C7NPS2_9FUNG (Putative cardiolipin-specific deacylase, mitochondrial n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NPS2_9FUNG)

HSP 1 Score: 61.6 bits (148), Expect = 1.960e-9
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 1
Query:    4 LVMCHGYGMGVGGWHMNLPTLMARH--HVFAKDWLGCGLSARPKWELEG---------VTETEEFFVDSLE 183
            LV+CHGYG G+G ++ N   L       +F+ DWLG G S+RPKW +           VTE EE FV+SLE
Sbjct:  131 LVICHGYGAGLGFFYRNYQNLSQEPGWRLFSLDWLGMGNSSRPKWTISKQSKQTWDDIVTEVEEHFVESLE 201          
BLAST of mRNA_H-paniculata_contig48229.11920.1 vs. uniprot
Match: A0A8H7PZL3_MORIS (AB hydrolase-1 domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PZL3_MORIS)

HSP 1 Score: 61.2 bits (147), Expect = 2.660e-9
Identity = 32/72 (44.44%), Postives = 41/72 (56.94%), Query Frame = 1
Query:    4 LVMCHGYGMGVGGWHMNLPTLMAR---HHVFAKDWLGCGLSARPKWEL---------EGVTETEEFFVDSLE 183
            LVMCHGYG G+G ++ N   L  +   + ++A DWLG G S+RPKWE+           V ETE  FV  LE
Sbjct:  102 LVMCHGYGAGLGFFYRNYNDLAEKSPNYRLYAIDWLGMGRSSRPKWEILRKKDETWDNVVEETESHFVQCLE 173          
BLAST of mRNA_H-paniculata_contig48229.11920.1 vs. uniprot
Match: A0A1X2HXS0_9FUNG (Alpha/Beta hydrolase protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2HXS0_9FUNG)

HSP 1 Score: 61.2 bits (147), Expect = 2.680e-9
Identity = 32/72 (44.44%), Postives = 43/72 (59.72%), Query Frame = 1
Query:    4 LVMCHGYGMGVGGWHMNLPTL--MARHHVFAKDWLGCGLSARPKWEL---------EGVTETEEFFVDSLER 186
            LVMCHGYG G+G ++ N   L  ++  +++A DWLG G S+RPKW +         + V ETE  FV SLE 
Sbjct:  136 LVMCHGYGAGLGFFYKNFYALGQVSGWNLYAIDWLGMGRSSRPKWTITKKSNQTWDDIVEETESHFVQSLEE 207          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48229.11920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGP8_ECTSI1.030e-2877.42AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
A0A397TXT8_9GLOM4.080e-1044.93Alpha/Beta hydrolase protein n=5 Tax=Gigaspora Tax... [more]
A0A8H7SWT5_9FUNG5.620e-1046.48AB hydrolase-1 domain-containing protein n=1 Tax=T... [more]
A0A8H7RB28_9FUNG1.050e-946.48AB hydrolase-1 domain-containing protein n=6 Tax=M... [more]
A0A433PJD6_9FUNG1.450e-945.07Alpha/Beta hydrolase protein n=1 Tax=Endogone sp. ... [more]
A0A1Y2FV89_PROLT1.900e-943.66Alpha/Beta hydrolase protein (Fragment) n=1 Tax=Pr... [more]
A0A1X2HM64_SYNRA1.960e-945.07Alpha/Beta hydrolase protein n=1 Tax=Syncephalastr... [more]
A0A1C7NPS2_9FUNG1.960e-945.07Putative cardiolipin-specific deacylase, mitochond... [more]
A0A8H7PZL3_MORIS2.660e-944.44AB hydrolase-1 domain-containing protein n=1 Tax=M... [more]
A0A1X2HXS0_9FUNG2.680e-944.44Alpha/Beta hydrolase protein n=1 Tax=Absidia repen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48229contigH-paniculata_contig48229:763..972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue6.7e-22
Seed eggNOG ortholog2880.D8LGP8
KEGG rclassRC00037,RC00039,RC00094
KEGG koko:K13535,ko:K13699
KEGG ReactionR09038,R09381
KEGG Pathwayko00564,ko04923,map00564,map04923
Hectar predicted targeting categoryother localisation
EggNOG free text desc.1-acylglycerol-3-phosphate O-acyltransferase activity
EggNOG OGsCOG0596@1,KOG4409@2759
EC2.3.1.51
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01004
Exons1
Model size210
Cds size201
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930428.5875337-UTR-H-paniculata_contig48229:762..7711622930428.5875337-UTR-H-paniculata_contig48229:762..771Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48229 763..771 +
1691481287.7796896-UTR-H-paniculata_contig48229:762..7711691481287.7796896-UTR-H-paniculata_contig48229:762..771Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48229 763..771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930428.6081066-CDS-H-paniculata_contig48229:771..9721622930428.6081066-CDS-H-paniculata_contig48229:771..972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48229 772..972 +
1691481287.7969146-CDS-H-paniculata_contig48229:771..9721691481287.7969146-CDS-H-paniculata_contig48229:771..972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48229 772..972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48229.11920.1prot_H-paniculata_contig48229.11920.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48229 772..972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48229.11920.1

>prot_H-paniculata_contig48229.11920.1 ID=prot_H-paniculata_contig48229.11920.1|Name=mRNA_H-paniculata_contig48229.11920.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MCHGYGMGVGGWHMNLPTLMARHHVFAKDWLGCGLSARPKWELEGVTETE
EFFVDSLERCAPCCAV*
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mRNA from alignment at H-paniculata_contig48229:763..972+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48229.11920.1 ID=mRNA_H-paniculata_contig48229.11920.1|Name=mRNA_H-paniculata_contig48229.11920.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at H-paniculata_contig48229:763..972+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCTGGTCATGTGCCACGGTTATGGGATGGGCGTTGGTGGGTGGCACAT GAACTTGCCCACACTCATGGCGCGACACCACGTGTTCGCCAAGGACTGGC TGGGTTGCGGGCTGTCGGCGAGGCCTAAGTGGGAGCTAGAAGGAGTTACT GAGACAGAGGAGTTTTTCGTAGACTCGCTTGAAAGGTGTGCTCCTTGTTG CGCTGTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig48229:763..972+

>mRNA_H-paniculata_contig48229.11920.1 ID=mRNA_H-paniculata_contig48229.11920.1|Name=mRNA_H-paniculata_contig48229.11920.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig48229:763..972+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCCACGGTTATGGGATGGGCGTTGGTGGGTGGCACATGAACTTGCC
CACACTCATGGCGCGACACCACGTGTTCGCCAAGGACTGGCTGGGTTGCG
GGCTGTCGGCGAGGCCTAAGTGGGAGCTAGAAGGAGTTACTGAGACAGAG
GAGTTTTTCGTAGACTCGCTTGAAAGGTGTGCTCCTTGTTGCGCTGTGTG
AATGTGCCACGGTTATGGGATGGGCGTTGGTGGGTGGCACATGAACTTGC
CCACACTCATGGCGCGACACCACGTGTTCGCCAAGGACTGGCTGGGTTGC
GGGCTGTCGGCGAGGCCTAAGTGGGAGCTAGAAGGAGTTACTGAGACAGA
GGAGTTTTTCGTAGACTCGCTTGAAAGGTGTGCTCCTTGTTGCGCTGTGT
GA
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