mRNA_H-paniculata_contig4813.11905.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4813.11905.1
Unique NamemRNA_H-paniculata_contig4813.11905.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4813.11905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4813contigH-paniculata_contig4813:7070..7643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size576
Cds size345
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930426.636297-UTR-H-paniculata_contig4813:7069..72981622930426.636297-UTR-H-paniculata_contig4813:7069..7298Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4813 7070..7298 +
1691481286.898364-UTR-H-paniculata_contig4813:7069..72981691481286.898364-UTR-H-paniculata_contig4813:7069..7298Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4813 7070..7298 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930426.6536386-CDS-H-paniculata_contig4813:7298..76431622930426.6536386-CDS-H-paniculata_contig4813:7298..7643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4813 7299..7643 +
1691481286.9078724-CDS-H-paniculata_contig4813:7298..76431691481286.9078724-CDS-H-paniculata_contig4813:7298..7643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4813 7299..7643 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4813.11905.1prot_H-paniculata_contig4813.11905.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4813 7299..7643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4813.11905.1

>prot_H-paniculata_contig4813.11905.1 ID=prot_H-paniculata_contig4813.11905.1|Name=mRNA_H-paniculata_contig4813.11905.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MPSRAMGALWVCLSVCLWSVDLSLYLVFHWVNRMYLRNTFYCRLQTRVNR
GRAKTRNRTLLLATVGNLLFDQDTEGPPVPRPQVRIKMGETRAFTLCSPS
NQRLPSALGKLLQAT
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mRNA from alignment at H-paniculata_contig4813:7070..7643+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4813.11905.1 ID=mRNA_H-paniculata_contig4813.11905.1|Name=mRNA_H-paniculata_contig4813.11905.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=574bp|location=Sequence derived from alignment at H-paniculata_contig4813:7070..7643+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCAGCATCGCCTGGGCAAATACAGTACCTTACATAGTACAGCACGTACA
GAGTGTCAGTGATACAGTCAGTGCAGCAAGGCAATGCAGGTGCGCTGCAC
CAGATCGTATTAGGCAAATGCTGGTGCTCTACTGCCTGCGGTGGGGCTGG
AATGTAATGAACATTAGCAGGGACGAGCACTTGCCAGTAGAAGCCGTATC
TGTGAGTTTCCCACTGGAGTCCAGGTAGGATGCCTTCAAGGGCGATGGGT
GCTCTGTGGGTCTGTCTGTCTGTCTGCCTGTGGTCTGTGGATTTGTCTCT
GTACCTCGTGTTCCACTGGGTAAACCGTATGTATTTACGAAACACATTTT
ACTGCAGGTTGCAGACACGAGTTAATCGAGGACGGGCTAAAACAAGAAAC
CGAACCTTACTACTCGCCACGGTCGGAAACCTGCTATTCGATCAAGACAC
GGAAGGGCCACCAGTACCACGTCCTCAAGTTCGTATCAAAATGGGAGAAA
CGCGAGCATTCACCTTATGTTCGCCAAGCAACCAGCGCTTACCGTCCGCC
CTCGGAAAATTACTTCAAGCTACA
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Coding sequence (CDS) from alignment at H-paniculata_contig4813:7070..7643+

>mRNA_H-paniculata_contig4813.11905.1 ID=mRNA_H-paniculata_contig4813.11905.1|Name=mRNA_H-paniculata_contig4813.11905.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig4813:7070..7643+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTTCAAGGGCGATGGGTGCTCTGTGGGTCTGTCTGTCTGTCTGCCT
GTGGTCTGTGGATTTGTCTCTGTACCTCGTGTTCCACTGGGTAAACCGTA
TGTATTTACGAAACACATTTTACTGCAGGTTGCAGACACGAGTTAATCGA
GGACGGGCTAAAACAAGAAACCGAACCTTACTACTCGCCACGGTCGGAAA
CCTGCTATTCGATCAAGACACGGAAGGGCCACCAGTACCACGTCCTCAAG
TTCGTATCAAAATGGGAGAAACGCGAGCATTCACCTTATGTTCGCCAAGC
AACCAGCGCTTACCGTCCGCCCTCGGAAAATTACTTCAAGCTACAATGCC
TTCAAGGGCGATGGGTGCTCTGTGGGTCTGTCTGTCTGTCTGCCTGTGGT
CTGTGGATTTGTCTCTGTACCTCGTGTTCCACTGGGTAAACCGTATGTAT
TTACGAAACACATTTTACTGCAGGTTGCAGACACGAGTTAATCGAGGACG
GGCTAAAACAAGAAACCGAACCTTACTACTCGCCACGGTCGGAAACCTGC
TATTCGATCAAGACACGGAAGGGCCACCAGTACCACGTCCTCAAGTTCGT
ATCAAAATGGGAGAAACGCGAGCATTCACCTTATGTTCGCCAAGCAACCA
GCGCTTACCGTCCGCCCTCGGAAAATTACTTCAAGCTACA
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