mRNA_H-paniculata_contig4811.11899.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4811.11899.1
Unique NamemRNA_H-paniculata_contig4811.11899.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4811.11899.1 vs. uniprot
Match: D8LL22_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL22_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.030e-16
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    4 RAEDDTCAICLDLYENGDTLTALPCRHFFHEHCIGPWLSS-SGLCPICKTE 153
            R +DD CAICL+ YE+GD+LT LPCRH FH  CI PWLS  S LCP+CK+E
Sbjct:  373 REDDDLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSE 423          
BLAST of mRNA_H-paniculata_contig4811.11899.1 vs. uniprot
Match: A0A1D1XYA5_9ARAE (E3 ubiquitin-protein ligase RNF13 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XYA5_9ARAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.600e-13
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 1
Query:   10 EDDTCAICLDLYENGDTLTALPCRHFFHEHCIGPWLSS-SGLCPICKTE 153
            E DTCAIC++ +ENGD L  LPC+H++H  CI PWL++ S  CP+CKT+
Sbjct:  131 EVDTCAICIEDFENGDELRLLPCKHWYHVECIDPWLTTKSSSCPLCKTD 179          
BLAST of mRNA_H-paniculata_contig4811.11899.1 vs. uniprot
Match: T2M3E9_HYDVU (RING finger protein 150 n=3 Tax=Hydra vulgaris TaxID=6087 RepID=T2M3E9_HYDVU)

HSP 1 Score: 71.6 bits (174), Expect = 2.240e-13
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   10 EDDTCAICLDLYENGDTLTALPCRHFFHEHCIGPWLSSSGLCPICKTE 153
            EDDTCA+CL+ Y++G+TL  LPC H FH+ CI PWL     CP+CK+ 
Sbjct:  238 EDDTCAVCLESYKDGETLRELPCIHLFHKSCIDPWLLYHRTCPMCKSN 285          
BLAST of mRNA_H-paniculata_contig4811.11899.1 vs. uniprot
Match: A0A2S5BA91_9BASI (RING-type domain-containing protein n=1 Tax=Rhodotorula taiwanensis TaxID=741276 RepID=A0A2S5BA91_9BASI)

HSP 1 Score: 71.2 bits (173), Expect = 3.610e-13
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 1
Query:   19 TCAICLDLYENGDTLTALPCRHFFHEHCIGPWLSSSGLCPICK 147
            TC +CLD ++ GD   ALPC+HF+HE C+ PWL +SG CPIC+
Sbjct:  319 TCGVCLDAFQLGDGAVALPCKHFYHEDCLVPWLKTSGTCPICR 361          
BLAST of mRNA_H-paniculata_contig4811.11899.1 vs. uniprot
Match: A0A3Q0SGN3_AMPCI (Ring finger protein 150a n=1 Tax=Amphilophus citrinellus TaxID=61819 RepID=A0A3Q0SGN3_AMPCI)

HSP 1 Score: 69.3 bits (168), Expect = 1.630e-12
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    7 AEDDTCAICLDLYENGDTLTALPCRHFFHEHCIGPWLSSSGLCPICK 147
            ++ D CA+C++ Y+  D +  LPCRHFFH+HC+ PWL     CP+CK
Sbjct:  263 SDSDNCAVCIEGYKPNDVVRILPCRHFFHKHCVDPWLQDHRTCPMCK 309          
BLAST of mRNA_H-paniculata_contig4811.11899.1 vs. uniprot
Match: A0A6G1C942_9ORYZ (RING-type domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1C942_9ORYZ)

HSP 1 Score: 65.1 bits (157), Expect = 1.680e-12
Identity = 23/45 (51.11%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   13 DDTCAICLDLYENGDTLTALPCRHFFHEHCIGPWLSSSGLCPICK 147
            ++ CA+C++ +E GD L A+PC H FHE CI  WL  SG+CP+C+
Sbjct:   43 EEECAVCMEDFEAGDKLRAMPCSHCFHERCIFDWLRVSGICPLCR 87          
BLAST of mRNA_H-paniculata_contig4811.11899.1 vs. uniprot
Match: A0A668VBE2_OREAU (Ring finger protein 150a n=1 Tax=Oreochromis aureus TaxID=47969 RepID=A0A668VBE2_OREAU)

HSP 1 Score: 68.2 bits (165), Expect = 2.090e-12
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 1
Query:   16 DTCAICLDLYENGDTLTALPCRHFFHEHCIGPWLSSSGLCPICK 147
            D CA+C++ Y+  D +  LPCRHFFH+HC+ PWL     CP+CK
Sbjct:  119 DNCAVCIEGYKPNDVVRILPCRHFFHKHCVDPWLQDHRTCPMCK 162          
BLAST of mRNA_H-paniculata_contig4811.11899.1 vs. uniprot
Match: A0A813FP03_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FP03_POLGL)

HSP 1 Score: 68.9 bits (167), Expect = 2.110e-12
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 1
Query:   10 EDDTCAICLDLYENGDTLTALPCRHFFHEHCIGPWLSSSGLCPICKTE 153
            +D  C+ICLD ++ GD LTALPC HFFH  C+  W+  +  CP+C+T 
Sbjct:  323 KDHNCSICLDSFQEGDLLTALPCEHFFHSECVTHWMQRATRCPLCRTS 370          
BLAST of mRNA_H-paniculata_contig4811.11899.1 vs. uniprot
Match: H2ZKN7_CIOSA (RING-type domain-containing protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2ZKN7_CIOSA)

HSP 1 Score: 68.9 bits (167), Expect = 2.300e-12
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1
Query:   10 EDDTCAICLDLYENGDTLTALPCRHFFHEHCIGPWLSSSG-LCPICK 147
            E D CAICLD YE GDTL  LPC+H +H  C+ PWL+SS  +CP+CK
Sbjct:  234 EYDVCAICLDEYEEGDTLRILPCQHAYHCKCVDPWLTSSKRVCPLCK 280          
BLAST of mRNA_H-paniculata_contig4811.11899.1 vs. uniprot
Match: A0A015IC27_RHIIW (RING-type domain-containing protein n=8 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015IC27_RHIIW)

HSP 1 Score: 68.9 bits (167), Expect = 2.350e-12
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   22 CAICLDLYENGDTLTALPCRHFFHEHCIGPWLSS-SGLCPICKTE 153
            CAICLD +ENGD L ALPC H FH  CI PWL+  S LCP+CK +
Sbjct:  464 CAICLDEFENGDQLRALPCGHEFHSECIDPWLTQKSSLCPLCKFD 508          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4811.11899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL22_ECTSI1.030e-1666.67RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A1D1XYA5_9ARAE1.600e-1357.14E3 ubiquitin-protein ligase RNF13 (Fragment) n=1 T... [more]
T2M3E9_HYDVU2.240e-1356.25RING finger protein 150 n=3 Tax=Hydra vulgaris Tax... [more]
A0A2S5BA91_9BASI3.610e-1358.14RING-type domain-containing protein n=1 Tax=Rhodot... [more]
A0A3Q0SGN3_AMPCI1.630e-1248.94Ring finger protein 150a n=1 Tax=Amphilophus citri... [more]
A0A6G1C942_9ORYZ1.680e-1251.11RING-type domain-containing protein n=1 Tax=Oryza ... [more]
A0A668VBE2_OREAU2.090e-1252.27Ring finger protein 150a n=1 Tax=Oreochromis aureu... [more]
A0A813FP03_POLGL2.110e-1250.00Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
H2ZKN7_CIOSA2.300e-1261.70RING-type domain-containing protein n=1 Tax=Ciona ... [more]
A0A015IC27_RHIIW2.350e-1264.44RING-type domain-containing protein n=8 Tax=Rhizop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4811contigH-paniculata_contig4811:11708..11860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue6.6e-14
Seed eggNOG ortholog2880.D8LL22
KEGG koko:K15692,ko:K19041
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.protein modification by small protein conjugation or removal
EggNOG OGsKOG4628@1,KOG4628@2759
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-27_000830.1
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons1
Model size153
Cds size153
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930426.1596272-CDS-H-paniculata_contig4811:11707..118601622930426.1596272-CDS-H-paniculata_contig4811:11707..11860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4811 11708..11860 -
1691481286.678539-CDS-H-paniculata_contig4811:11707..118601691481286.678539-CDS-H-paniculata_contig4811:11707..11860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4811 11708..11860 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4811.11899.1prot_H-paniculata_contig4811.11899.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4811 11708..11860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4811.11899.1

>prot_H-paniculata_contig4811.11899.1 ID=prot_H-paniculata_contig4811.11899.1|Name=mRNA_H-paniculata_contig4811.11899.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
MRAEDDTCAICLDLYENGDTLTALPCRHFFHEHCIGPWLSSSGLCPICKT
E
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mRNA from alignment at H-paniculata_contig4811:11708..11860-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4811.11899.1 ID=mRNA_H-paniculata_contig4811.11899.1|Name=mRNA_H-paniculata_contig4811.11899.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at H-paniculata_contig4811:11708..11860- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAGCAGAGGATGACACATGCGCGATTTGCCTAGACCTGTACGAGAA CGGAGACACGCTAACCGCGCTGCCGTGCCGGCATTTCTTCCATGAGCATT GCATAGGACCGTGGCTGTCGAGCAGCGGATTGTGCCCCATATGCAAGACT GAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4811:11708..11860-

>mRNA_H-paniculata_contig4811.11899.1 ID=mRNA_H-paniculata_contig4811.11899.1|Name=mRNA_H-paniculata_contig4811.11899.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig4811:11708..11860- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAGCAGAGGATGACACATGCGCGATTTGCCTAGACCTGTACGAGAA
CGGAGACACGCTAACCGCGCTGCCGTGCCGGCATTTCTTCCATGAGCATT
GCATAGGACCGTGGCTGTCGAGCAGCGGATTGTGCCCCATATGCAAGACT
GAGATGAGAGCAGAGGATGACACATGCGCGATTTGCCTAGACCTGTACGA
GAACGGAGACACGCTAACCGCGCTGCCGTGCCGGCATTTCTTCCATGAGC
ATTGCATAGGACCGTGGCTGTCGAGCAGCGGATTGTGCCCCATATGCAAG
ACTGAG
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