mRNA_H-paniculata_contig4810.11897.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4810.11897.1
Unique NamemRNA_H-paniculata_contig4810.11897.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4810.11897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4810contigH-paniculata_contig4810:7611..13422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size499
Cds size474
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4810.11897.1prot_H-paniculata_contig4810.11897.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4810 7611..13398 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930425.8989856-CDS-H-paniculata_contig4810:7610..76791622930425.8989856-CDS-H-paniculata_contig4810:7610..7679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4810 7611..7679 -
1691481286.5596354-CDS-H-paniculata_contig4810:7610..76791691481286.5596354-CDS-H-paniculata_contig4810:7610..7679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4810 7611..7679 -
1622930425.9167197-CDS-H-paniculata_contig4810:8971..91941622930425.9167197-CDS-H-paniculata_contig4810:8971..9194Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4810 8972..9194 -
1691481286.5727596-CDS-H-paniculata_contig4810:8971..91941691481286.5727596-CDS-H-paniculata_contig4810:8971..9194Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4810 8972..9194 -
1622930425.938886-CDS-H-paniculata_contig4810:13216..133981622930425.938886-CDS-H-paniculata_contig4810:13216..13398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4810 13217..13398 -
1691481286.5815973-CDS-H-paniculata_contig4810:13216..133981691481286.5815973-CDS-H-paniculata_contig4810:13216..13398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4810 13217..13398 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930425.9691217-UTR-H-paniculata_contig4810:13398..134221622930425.9691217-UTR-H-paniculata_contig4810:13398..13422Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4810 13399..13422 -
1691481286.5920954-UTR-H-paniculata_contig4810:13398..134221691481286.5920954-UTR-H-paniculata_contig4810:13398..13422Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4810 13399..13422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4810.11897.1

>prot_H-paniculata_contig4810.11897.1 ID=prot_H-paniculata_contig4810.11897.1|Name=mRNA_H-paniculata_contig4810.11897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
MRAAAGEPRQEGQGGITVGGPRRMLVLILSVLVATSCCVDRTEAFAYVPS
LSSSSSSSWRRTGGISRPITSPIPSTERATATSTYAASAGYKAQGQARVV
SGNRETLGALSAGGAVGIGAFGRRGSHCAGCGRGQALSMAATATTAVGGE
GNGGSMNV
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mRNA from alignment at H-paniculata_contig4810:7611..13422-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4810.11897.1 ID=mRNA_H-paniculata_contig4810.11897.1|Name=mRNA_H-paniculata_contig4810.11897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5812bp|location=Sequence derived from alignment at H-paniculata_contig4810:7611..13422- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAGTTGCAAAGTGAACGAGGCATGCGTGCAGCGGCAGGAGAGCCACG
GCAGGAGGGCCAGGGTGGGATTACGGTAGGGGGGCCGAGGAGGATGTTGG
TGCTAATACTGTCGGTGCTGGTGGCGACCTCGTGCTGCGTGGATAGGACA
GAGGCGTTTGCATATGTGCCATCGTTGTCGTCGTCATCCTCCTCTTCTTG
GAGAAGGTAAAGCATTCGAGGAGGATGAGGACCAACCATGATATCTACAC
AGCGCGATGTGGATATTTTCGTGTTTCGTTTACTGCAGACGAATACCACA
GATTAGCCAGCAGATTTTTTCCCACAGCTTACAGTATGGTTCAGACTGGG
GGGCTGCTGCTGCAAATCTAGACACCGCCCAAATCTAATAATGTTCTTCA
ACACGTTAGCCCGATTTCGCAGACCCGCGGTCAGATTATGGAAAACGCCC
GTGGCAGCACTAGGACATCTACACCACACAATGCTCCTCTGCTAGCAGGC
ACGCTCCCCAGTAAGCGGCTACAAGGTGCCCCCTACAACCGAAACAAATT
AGCAAGAGTGTCGTGGAGGGTACTGAGCCCTGAGCGTCGGGATTAGTTAG
AAGATATAAGAAAAACACAACGGGAGTACGGCTCACCGAGTGCACTGCGG
GTTAGGTCAGACCAGCCTGCGATCGCGTGTGGAAGATAATGTTCGAGCAG
CAGGTCCAGGAAGTAGCACCAACCGCATGGGGAAATTATACGACCGAAGA
TAGTGTACAGACTCGGATGGGGTTTTTTTACAACACCTAATGGAACCTAC
ATGGCAGCGGGCACGCAAACGCCCTTTTATCACATAATATCCTGTATTGA
CTTACGACTATAATAGGGTATACCTTGTGCTGGAGTGTGATCAGCGTACA
CCTTACACTGGAAGATGATGGCCAAATAAGGCGGTGTATTGTATATATAC
ACACGCGATGTAGACACCACCCCACGTATCACCCCTTGCCTACCTTTCTC
CTCTCCACACTACCTCTAGGTTGAGAACCAACTTGGTTCCATGTATTTTA
TGATGATGCGGCGGCCATCTCCTGTAGCCCTGGTAGATGAGCTGATCTCT
CTCTTTTCTTATCTTCTGTGGCGCCGTGATATTATTTTAAACCCTGAGAA
TTTAGCCCGTTTGGCTCCCTGTTCCCAGTTGGACACACGCGATAATCCTT
TTGAACATTTAAAATGAGTGTGCCAATTACTTTTTTCGAAGCCTGTCAGA
GCCCGGGGCTCTTTAAAAGAAAAAACAAACAGGAAGGTATTTGACGGCAA
CAAATGTCAGCACCATATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGT
GTGATGTATATTCTGTCTGTCTGTCTGTCTAGCTTTTCTTTGTCCCATTG
CTGAAGGTTGTACTCGCCGTTTTCCATCAGTGTTGAACTGGGCATTAGAT
TGCGATCACCGCCTGTAGATGAGAACAGGTGCTAAAAGATCACCGGGGGG
GGGGGAAGACATCTGTTGGAGGGCAGGGGTGTCGAAAGGAATTATTTGTT
AGTAGGTCCGTTCTGAAGGATGCACCACCCTGAAGCTTTTTGTGTATGCT
CTCCCCTCTATACTTCCTCTGTGCCATAAGTACAGTCCGTTGTGTTTGAC
AGATTATTATCTCGAGATCTAAGACTGTTGAGATGCTGTGGTTGCAATCG
ATGATAATCTCAAGTCTGATAAAGTTTCATACGCGCTATTCCGAAATGTA
TTCCAAATTAATGGGGTTCCAGAATTTGGACCATTTTCACGCCTTTTTTT
AATTTGGAAAATACGAAAAGGGGCAAAATATAATATGATATTTTTTCCGT
CGACAACAATGTTTTTTGCGCCACGCGCGCTTCCGATGGATTTCGTCAAT
TTCCGTGATATTTTGGGAATTGATCCCCAAAAATGTGTGCGGATAGTAAT
TGTTTAAATATCGGAGGCGGTTCTGTGCCTCTACAAACTCAATCAACTTT
GTTTTTATGGCACCGAGGAAATAGGTCGCAGTAACGTTGGTTGCATCATA
ATTTTCGTTATTTGGCGGCAACAATTTGATCATTTTTTTTTTTGTTCTAG
AGTAGAGAGTGTTTGGGCGAAATAAATTCCTTTTGTGATTTTAATTTTGG
TCGTATTCCAGAGTATGTATTTAGCTGAACAGTGACCTTCTCGTTGCAGA
CCAGCTCCGAACCCCTGGTCACGTTTCGTCACGAGAGAACTTCCCTTTTT
GAAGGTCGTATATCTGTGAGACACGCACTCATGAATGGTCATCGGTCATG
ACAAGACGTCGGTTTTTTAATGAGATGTTGGTGTAGGTGAACTAGGGTCC
GCGGTGAGGAGCAACTCACTGTTAGCTTTACACTAGGGAATACTTTTTTT
TGCGTGAACACTCTGATGTTCGATAGGTAACCTTTTGTGTTTTTTGCCAG
CTGGAAAATGATCAGTCATCTCTGCGATTTTAGTCGCTTCTACCGGAACT
ACGGGCAAGTTAGTTGTGTGTTTGCGTCTACATTCTCCAGTGGAGGTATA
AGATGTACATGTGCAGCAATTGTGACGGTTACTGGAATAATTCAGGGATA
GTTCTTTGTAGAGTTGAGAGCAAACGGCCGAAAGAAACGGATAATAATAT
CTGGCAATACCATGCGACTCTTGGCAGCATCGCTGGATGATGACAATTAA
TATAGATCGGTCTTCAAGCTGTCCGAACGAACCGCCGTCCACTGAAGAAG
GGACTCACACGCTGATAAAAAGAAAAATATATTACATTTGAAGTCAAGTC
CCAAAATAAAATCAGCCTATTTTGAGTGTTCCGTTTGATTTTTTTTTTAA
CGATTACTAGCTGTATCCATTTTGAAACGATCGCCTATTTGACACGCCCA
GCCGAAACAGTTCATCTTCCGGTGAATTGACGGGCCACATCTCGCCGTGC
TGGCGAACACGCCGTTGGGCGAAATATATGCCTACCGGACCGAACGGTTC
GTGACAACATAGTGGTTCACCTAATTTTTTTTCTAAGATTTGTTTTTGGG
AAACCCATATAATTTTCAAGATATCTATTTATTGGCATTTTTTTTTTTTT
TCTGTACAGTCAGTCATGCGTACAATGACACAATAAGAAAGACACAAGTA
GCCGAAAATGTTAGTTTGGTATAGTTTTTTTTTATCTCACGGGCATACCT
TTCACCCCCCCCCCCCCCGGAAAAATATGAAAACATGCAAACAGTTTTCA
CAAAAAACTGCAAGTATTCGCCTGAGTTTCACAATGAGCCTGTGTATTAT
ATGTGCACCGGACCATCCATAACTGGTAGTCATAACCGTAAATCGAATAG
ACAGGGTTGGGTACTTCAATCTATGTGTCCTCTTATTCTGAAACTCAAAT
ATATACTGTCAGCTTTTTGTGAAAACCATTTGTAAGTATTCGTTTTTGTC
CGGGGGGTGATGTATTTAAGGAAAGCAAAAAACGGTGTGTTCCTCACTGC
AGTTTCTTCCACCGTGGTGTATATTCTGTGGGGTATGACCGTTTAACTAC
TGAATAACGAGACTTTTTGGGGTTTGTTTAACCTACGGAAGGCTAAGGCA
AAAACCTCTATCCGATGCTTCCATACCGAAGTACGTCTACATTTCCTTTT
ACAGAACAGAGTTATTTGTCCCTCTGTGGAGTAGGCGCTACCCTGGTTCG
GATGAACCAGGCAGGTAGTGTGGGTGTTGCACCCACTAAAAGACCTCTCA
CCAGACTTTCAGTCATGCTCAGTTCACGAGCTACCCTACTCGTTCGGGCG
TAGGTCCGTGGTGAATAACGAGGTGTCTTGGCCGTGGTCGTAAACTAGGC
GATCGTTTTGCGAAAAAAAAAAAAAAATGTTGCACACACTCGAAATAATT
TGGTATAATTCCAGAGGTGATTCGGAGAGTTGTGTGATGCTTACAAACCA
GGACATGATTCAGTTTTCAGTTTTGAGCCGACGGCGGCGGTTCGTTGGGG
CACCGTATACATCTCTCTCTCTATATATATATATATTGCTTGAAAATACC
GAAGAATCAAAATTCCCGAAGACACGTTCTCCAAGGATCGGAATTTATCA
TTTCCCACCGAACTGGAAGGAGATTGAGAGATAGTGCAATTGTAAAAAAA
TACACAACTCGGCTGAACGTTGACATACCATTTGAAGAGACAATAATTCT
TGTGTTGTATCAACAATACCCATGGCAGGACGGGTGGCATCTCAAGACCC
ATAACTTCACCAATACCGTCAACAGAGAGAGCGACAGCAACATCAACCTA
TGCCGCTTCCGCTGGATACAAAGCCCAGGGGCAAGCGCGCGTCGTTTCTG
GCAATCGAGAGACGTTGGGAGCACTGTCGGCGGGAGGGGCTGTTGGGATT
GGAGCGTTTGGGAGGCGAGGTTCCCACTGTGCGGGTTGCGGCAGGGGGCA
GGTATAGTCTCAATCTATGGTATTGGGGCGAGAGGGTTATACAGCTGAAT
TTAATCTATAGTAGCGTATACGTTATCAGTAATATTGAAATACTAAGTAG
AGAATTTGGATGTTTTGGGGGAGTGTTGGACAAAATGAAATAGTCGTTTT
GATTTTTCACTTTTCGCACTTGATTGGAGCTTCTTTTTTTTTTTCAAGTG
ACAGACACGATGAGAAATGGAACATGTATTTTCTGGTATTTTGTACGAAG
GGCAGTGGGGAGCATGTCACCCCCCAGGGTGGTTGAGGCTGTTGAGAGTT
GGTGTGGGGATGGAGAGACCACGGGGGGGGGGGGGTAGGGATGCCCATGG
CGCGTGTTGGGACACGGAGAGAGACAGGTGCGAAAATATATATGTATATT
ATCAAAGGCCTGATCTCTTTGTTGTGTTTGGAGTCTTCGTAGTCATGATG
GAGGGATAAATAACTGTACCACAAAAAAGAGGTATGCCTGTTGTCTTTTA
AGCTATTGGAGTACTTCGTTATTTTCCACAAACTGAAGAAGGTCAAGAGT
GGAGTGAGGTTTCTGTTGAGTTAGCCCATGACAATGAATCATAACCTTAT
ATGTATACTTGAATGTTCATGAGCAAGTTTTTCATTCATGAGGGTTTTCC
TGCTGTCGACCGCTGTCGCCCACGTCGCTTGCTGCGCTATAATATCCTGA
CGATAGTCGAGAGACCCCCCGGCAGGGGGCAGCTCTTGGCATGTTATGAT
GTTCTGCTTCCTCTAGTATTTTAGTTTATTCGTGCTGTTCGTTCTTGCTC
TGGAATGTTGTCTACAGTGATGATACTGTTTTCGGTGATTGGGTGGGCGC
GGGGCCCAGGGGAGGCGGGCAAGAGGTGGGGGGGGGGGAGGGTCAGCTGT
GTGTACTGTAGGTCAAAGATGAAATAGTCCTCATATAAACGATTGACCTC
ACACCATGAATACTAAAAAAAGGATTTATTTCAGTAACTTGAATCTCTCG
TGGATACTAGTGAATTGACCCTGCCACACACACACAATTTGAAGTACAAC
CTCGACCGTTATCTTTATGCCCCACGTTGAGGTGGTGAGGAGTTGACTTT
ATTCGAGGGTTGTTGTATGTACATACACTTGTCACAAAAATTGATATATA
AAAAAAAAAAAGGTTTTTCGCTTTTCGTGTTTGGCTTTGGTTTGGTTTTG
TCTTGATTAGCAATGTTTTTTTTTTTTTTTAATTCTCTCTCATTCTTATT
TCTCGGGCGGGACGGGGCGGGGCGGATTGGTCGTTTCGAACAGGCGTTAT
CTATGGCGGCGACCGCGACGACGGCGGTGGGAGGAGAGGGAAATGGGGGG
TCAATGAATGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4810:7611..13422-

>mRNA_H-paniculata_contig4810.11897.1 ID=mRNA_H-paniculata_contig4810.11897.1|Name=mRNA_H-paniculata_contig4810.11897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig4810:7611..13422- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTGCAGCGGCAGGAGAGCCACGGCAGGAGGGCCAGGGTGGGATTAC
GGTAGGGGGGCCGAGGAGGATGTTGGTGCTAATACTGTCGGTGCTGGTGG
CGACCTCGTGCTGCGTGGATAGGACAGAGGCGTTTGCATATGTGCCATCG
TTGTCGTCGTCATCCTCCTCTTCTTGGAGAAGATGCGTGCAGCGGCAGGA
GAGCCACGGCAGGAGGGCCAGGGTGGGATTACGGTAGGGGGGCCGAGGAG
GATGTTGGTGCTAATACTGTCGGTGCTGGTGGCGACCTCGTGCTGCGTGG
ATAGGACAGAGGCGTTTGCATATGTGCCATCGTTGTCGTCGTCATCCTCC
TCTTCTTGGAGAAGGACGGGTGGCATCTCAAGACCCATAACTTCACCAAT
ACCGTCAACAGAGAGAGCGACAGCAACATCAACCTATGCCGCTTCCGCTG
GATACAAAGCCCAGGGGCAAGCGCGCGTCGTTTCTGGCAATCGAGAGACG
TTGGGAGCACTGTCGGCGGGAGGGGCTGTTGGGATTGGAGCGTTTGGGAG
GCGAGGTTCCCACTGTGCGGGTTGCGGCAGGGGGCAGGACGGGTGGCATC
TCAAGACCCATAACTTCACCAATACCGTCAACAGAGAGAGCGACAGCAAC
ATCAACCTATGCCGCTTCCGCTGGATACAAAGCCCAGGGGCAAGCGCGCG
TCGTTTCTGGCAATCGAGAGACGTTGGGAGCACTGTCGGCGGGAGGGGCT
GTTGGGATTGGAGCGTTTGGGAGGCGAGGTTCCCACTGTGCGGGTTGCGG
CAGGGGGCAGGCGTTATCTATGGCGGCGACCGCGACGACGGCGGTGGGAG
GAGAGGGAAATGGGGGGTCAATGAATGTGGCGTTATCTATGGCGGCGACC
GCGACGACGGCGGTGGGAGGAGAGGGAAATGGGGGGTCAATGAATGTG
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