mRNA_H-paniculata_contig47922.11867.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47922.11867.1
Unique NamemRNA_H-paniculata_contig47922.11867.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig47922.11867.1 vs. uniprot
Match: A0A2I0WJT9_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WJT9_9ASPA)

HSP 1 Score: 98.2 bits (243), Expect = 7.810e-23
Identity = 48/112 (42.86%), Postives = 72/112 (64.29%), Query Frame = 1
Query:   10 IYTLRQKSEALWALKHFERDVARANGLRIKRRQSDQGGEYTEKAFRQFCAENGIEQEFSDTYTTQQNGAMERSWHSIFEMARANMITANIGRRYWAEAVHSAVYCLKRAPTR 345
            +Y L++KSE     K+F+  V   +G +IK  +SD+GGE+    F  FC E G+E + +  YT QQNG  ER   ++ EMAR+ +I  +I +++WAEAV++AVY L R PT+
Sbjct:   25 VYFLKEKSETFGIFKNFKLLVENQSGQKIKILRSDRGGEFNSCQFEDFCKEEGLEHQLTVAYTPQQNGVTERKNRTVMEMARSMLIAKDIPKKFWAEAVNTAVYVLNRCPTK 136          
BLAST of mRNA_H-paniculata_contig47922.11867.1 vs. uniprot
Match: A0A6D2HN99_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HN99_9BRAS)

HSP 1 Score: 93.6 bits (231), Expect = 7.790e-20
Identity = 45/110 (40.91%), Postives = 69/110 (62.73%), Query Frame = 1
Query:   13 YTLRQKSEALWALKHFERDVARANGLRIKRRQSDQGGEYTEKAFRQFCAENGIEQEFSDTYTTQQNGAMERSWHSIFEMARANMITANIGRRYWAEAVHSAVYCLKRAPT 342
            + L +KSEA    K F+    R +G ++   ++D+GGEY+ KAF +FC ENGI+++ +  YT QQNG  E    S+  M R  ++  ++ RR+WAEAV  AV+ L R+P+
Sbjct:  511 FLLTEKSEAFQVFKEFKAAAERESGQQLVCLRTDRGGEYSSKAFEEFCRENGIKRQLTAAYTPQQNGVAEMKNRSVMNMTRCMLLEMSVPRRFWAEAVQYAVHILNRSPS 620          
BLAST of mRNA_H-paniculata_contig47922.11867.1 vs. uniprot
Match: A0A4Y1QR18_PRUDU (Multidrug resistance-associated protein 9 n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QR18_PRUDU)

HSP 1 Score: 92.0 bits (227), Expect = 2.230e-19
Identity = 46/112 (41.07%), Postives = 71/112 (63.39%), Query Frame = 1
Query:   10 IYTLRQKSEALWALKHFERDVARANGLRIKRRQSDQGGEYTEKAFRQFCAENGIEQEFSDTYTTQQNGAMERSWHSIFEMARANMITANIGRRYWAEAVHSAVYCLKRAPTR 345
            +Y L++KSE     K F+  V + +G  IK  +SD+GGEYT + F  +C + GI ++ + +Y+ QQNG  ER   +I +MA + M    + +R+WAEAV +AVY L R+PT+
Sbjct:    4 VYFLKEKSETFVVFKRFKALVEKQSGSTIKVMRSDRGGEYTSQEFEDYCKDEGIWKQLTASYSPQQNGIAERKNRTIVDMATSMMNEKGLPKRFWAEAVFTAVYILNRSPTK 115          
BLAST of mRNA_H-paniculata_contig47922.11867.1 vs. uniprot
Match: A0A6A2ZKQ4_HIBSY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZKQ4_HIBSY)

HSP 1 Score: 91.7 bits (226), Expect = 3.710e-19
Identity = 46/113 (40.71%), Postives = 70/113 (61.95%), Query Frame = 1
Query:   10 IYTLRQKSEALWALKHFERDVARANGLRIKRRQSDQGGEYTEKAFRQFCAENGIEQEFSDTYTTQQNGAMERSWHSIFEMARANMITANIGRRYWAEAVHSAVYCLKRAPTRP 348
            +Y L++KSE     + ++  V   NG+++KR +SD GGEY  + FR+FCA NGI+ E +   T QQNG  ER   ++ E AR+  I A + +  WAEA+++A Y + R P+ P
Sbjct:  399 VYFLKKKSEVFDTFRKWKAMVENENGMKVKRLRSDNGGEYRNRRFREFCANNGIKMETTVPMTPQQNGVAERMNKTLNERARSMRIHAGLPKFLWAEAINTAAYLINRGPSVP 511          
BLAST of mRNA_H-paniculata_contig47922.11867.1 vs. uniprot
Match: A0A6A2Y6G9_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2Y6G9_HIBSY)

HSP 1 Score: 91.3 bits (225), Expect = 5.020e-19
Identity = 47/113 (41.59%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   10 IYTLRQKSEALWALKHFERDVARANGLRIKRRQSDQGGEYTEKAFRQFCAENGIEQEFSDTYTTQQNGAMERSWHSIFEMARANMITANIGRRYWAEAVHSAVYCLKRAPTRP 348
            +Y L++KSEA    + ++  V    GL++KR +SD GGEY  + FR FCA NGI+ E +   T  QNG  ER   ++ E AR+ MI A + +  WAEA+++A Y + R P+ P
Sbjct:  485 VYFLKKKSEAFDTFRKWKAMVKNETGLKVKRLRSDNGGEYKNRRFRDFCANNGIKMETTVPMTPHQNGVAERMNRTMNERARSMMIHAGLPKFLWAEAINTAAYLINRGPSVP 597          
BLAST of mRNA_H-paniculata_contig47922.11867.1 vs. uniprot
Match: A0A6A3BE56_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BE56_HIBSY)

HSP 1 Score: 91.3 bits (225), Expect = 5.140e-19
Identity = 46/113 (40.71%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   10 IYTLRQKSEALWALKHFERDVARANGLRIKRRQSDQGGEYTEKAFRQFCAENGIEQEFSDTYTTQQNGAMERSWHSIFEMARANMITANIGRRYWAEAVHSAVYCLKRAPTRP 348
            +Y L++KSE     + ++  V   NG+++KR +SD GGEY  + FR FCA NGI+ E +   T QQNG  ER   ++ E AR+  I A + +  WAEA+++A Y + R P+ P
Sbjct:  501 VYFLKKKSEVFDTFRKWKAMVENENGMKVKRLRSDNGGEYRNRRFRDFCANNGIKMETTVPMTPQQNGVAERMNRTLNERARSMRIHAGLPKFLWAEAINTAAYLINRGPSVP 613          
BLAST of mRNA_H-paniculata_contig47922.11867.1 vs. uniprot
Match: A0A0V0IT42_SOLCH (Putative ovule protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0IT42_SOLCH)

HSP 1 Score: 88.6 bits (218), Expect = 7.730e-19
Identity = 45/112 (40.18%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   10 IYTLRQKSEALWALKHFERDVARANGLRIKRRQSDQGGEYTEKAFRQFCAENGIEQEFSDTYTTQQNGAMERSWHSIFEMARANMITANIGRRYWAEAVHSAVYCLKRAPTR 345
            +Y L  K +     K F+  V   +G ++K  +SD G EYT   F ++C + GI+Q+F+ +YT QQNG  ER   ++ EMAR  +    + + +WAEAV++AVY L R PTR
Sbjct:   28 VYFLSSKYQVFSVFKEFKAMVEMESGCKLKYIRSDNGTEYTSYQFSKYCKDLGIQQQFTVSYTPQQNGVSERKNRTVMEMARCMLAEKKMPKYFWAEAVNTAVYLLNRLPTR 139          
BLAST of mRNA_H-paniculata_contig47922.11867.1 vs. uniprot
Match: A0A6A2Z3T6_HIBSY (Piezo-type mechanosensitive ion channel-like protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2Z3T6_HIBSY)

HSP 1 Score: 90.1 bits (222), Expect = 1.340e-18
Identity = 46/113 (40.71%), Postives = 68/113 (60.18%), Query Frame = 1
Query:   10 IYTLRQKSEALWALKHFERDVARANGLRIKRRQSDQGGEYTEKAFRQFCAENGIEQEFSDTYTTQQNGAMERSWHSIFEMARANMITANIGRRYWAEAVHSAVYCLKRAPTRP 348
            +Y L+ KSE     + ++  V    GL++KR +SD GGEY + +FR FCA NGI+ E +   T QQNG  ER   ++ E AR+  I A + +  WAEA+++A Y + R P+ P
Sbjct:  974 VYFLKNKSEVFDTFRKWKAMVENETGLKVKRLRSDNGGEYRDSSFRDFCANNGIKMETTVPITPQQNGVAERMNRTLNERARSMTIHAGLPKFLWAEAINTAAYLINRGPSVP 1086          
BLAST of mRNA_H-paniculata_contig47922.11867.1 vs. uniprot
Match: Q8WSJ0_ANOGA (Polyprotein (Fragment) n=1 Tax=Anopheles gambiae TaxID=7165 RepID=Q8WSJ0_ANOGA)

HSP 1 Score: 89.7 bits (221), Expect = 1.710e-18
Identity = 47/111 (42.34%), Postives = 70/111 (63.06%), Query Frame = 1
Query:   10 IYTLRQKSEALWALKHFERDVARANGLRIKRRQSDQGGEYTEKAFRQFCAENGIEQEFSDTYTTQQNGAMERSWHSIFEMARANMITANIGRRYWAEAVHSAVYCLKRAPT 342
            +Y L++KSEA   +  + + V    G + +  +SDQGGEY+ KA R+FCA+ GI+ EF+  Y+ QQNG  ER   S+ EM R  +  A + +R+WAEAV++A Y   R P+
Sbjct:  374 VYFLKKKSEAEDKIHEYVKLVQNQFGRKPRIIRSDQGGEYSNKALRKFCADEGIKMEFTAAYSPQQNGVAERKNRSLTEMGRCMLRDAGMHKRFWAEAVNTACYLQNRLPS 484          
BLAST of mRNA_H-paniculata_contig47922.11867.1 vs. uniprot
Match: A0A6A3ARG1_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3ARG1_HIBSY)

HSP 1 Score: 89.7 bits (221), Expect = 1.760e-18
Identity = 48/113 (42.48%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   10 IYTLRQKSEALWALKHFERDVARANGLRIKRRQSDQGGEYTEKAFRQFCAENGIEQEFSDTYTTQQNGAMERSWHSIFEMARANMITANIGRRYWAEAVHSAVYCLKRAPTRP 348
            +Y L+QKSE    LK ++ +V    G +IK  +SD G EYT+  F QFC E GI++ F+   T QQNG  ER   S+ E AR   + A + + +WAEAV+ A Y + R+P  P
Sbjct:  361 VYFLKQKSEVFEKLKLWKTEVENQTGRKIKCLRSDNGTEYTDSQFLQFCKEYGIQRHFTVRKTPQQNGVAERMNRSLNERARCFRLNAGLPKHFWAEAVNMACYLINRSPRAP 473          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47922.11867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2I0WJT9_9ASPA7.810e-2342.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2HN99_9BRAS7.790e-2040.91Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A4Y1QR18_PRUDU2.230e-1941.07Multidrug resistance-associated protein 9 n=1 Tax=... [more]
A0A6A2ZKQ4_HIBSY3.710e-1940.71Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A2Y6G9_HIBSY5.020e-1941.59Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3BE56_HIBSY5.140e-1940.71Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A0V0IT42_SOLCH7.730e-1940.18Putative ovule protein n=1 Tax=Solanum chacoense T... [more]
A0A6A2Z3T6_HIBSY1.340e-1840.71Piezo-type mechanosensitive ion channel-like prote... [more]
Q8WSJ0_ANOGA1.710e-1842.34Polyprotein (Fragment) n=1 Tax=Anopheles gambiae T... [more]
A0A6A3ARG1_HIBSY1.760e-1842.48Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47922contigH-paniculata_contig47922:2..355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score89.4
Seed ortholog evalue1.3e-15
Seed eggNOG ortholog3712.Bo5g132790.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3884B@33090,3GZ1B@35493,3HXH8@3699,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Exons1
Model size354
Cds size354
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930420.916428-CDS-H-paniculata_contig47922:1..3551622930420.916428-CDS-H-paniculata_contig47922:1..355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47922 2..355 -
1691481284.3127298-CDS-H-paniculata_contig47922:1..3551691481284.3127298-CDS-H-paniculata_contig47922:1..355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47922 2..355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47922.11867.1prot_H-paniculata_contig47922.11867.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47922 2..355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47922.11867.1

>prot_H-paniculata_contig47922.11867.1 ID=prot_H-paniculata_contig47922.11867.1|Name=mRNA_H-paniculata_contig47922.11867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MRKIYTLRQKSEALWALKHFERDVARANGLRIKRRQSDQGGEYTEKAFRQ
FCAENGIEQEFSDTYTTQQNGAMERSWHSIFEMARANMITANIGRRYWAE
AVHSAVYCLKRAPTRPHN
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mRNA from alignment at H-paniculata_contig47922:2..355-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47922.11867.1 ID=mRNA_H-paniculata_contig47922.11867.1|Name=mRNA_H-paniculata_contig47922.11867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=354bp|location=Sequence derived from alignment at H-paniculata_contig47922:2..355- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCAAAATCTATACTTTGCGACAAAAGTCGGAGGCGCTATGGGCCCT GAAGCACTTCGAGAGGGACGTAGCGAGGGCAAACGGCTTGCGGATTAAGC GTCGCCAGTCAGATCAGGGAGGAGAATATACTGAGAAGGCTTTTAGGCAA TTCTGCGCGGAAAATGGCATCGAGCAGGAGTTCTCTGACACGTACACAAC GCAGCAAAACGGTGCGATGGAGCGTAGCTGGCACAGCATATTCGAGATGG CAAGAGCCAACATGATCACCGCCAACATAGGTCGTCGATATTGGGCGGAG GCGGTGCACTCGGCAGTGTACTGCCTAAAGCGCGCCCCGACGCGACCGCA CAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig47922:2..355-

>mRNA_H-paniculata_contig47922.11867.1 ID=mRNA_H-paniculata_contig47922.11867.1|Name=mRNA_H-paniculata_contig47922.11867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig47922:2..355- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCAAAATCTATACTTTGCGACAAAAGTCGGAGGCGCTATGGGCCCT
GAAGCACTTCGAGAGGGACGTAGCGAGGGCAAACGGCTTGCGGATTAAGC
GTCGCCAGTCAGATCAGGGAGGAGAATATACTGAGAAGGCTTTTAGGCAA
TTCTGCGCGGAAAATGGCATCGAGCAGGAGTTCTCTGACACGTACACAAC
GCAGCAAAACGGTGCGATGGAGCGTAGCTGGCACAGCATATTCGAGATGG
CAAGAGCCAACATGATCACCGCCAACATAGGTCGTCGATATTGGGCGGAG
GCGGTGCACTCGGCAGTGTACTGCCTAAAGCGCGCCCCGACGCGACCGCA
CAACATGCGCAAAATCTATACTTTGCGACAAAAGTCGGAGGCGCTATGGG
CCCTGAAGCACTTCGAGAGGGACGTAGCGAGGGCAAACGGCTTGCGGATT
AAGCGTCGCCAGTCAGATCAGGGAGGAGAATATACTGAGAAGGCTTTTAG
GCAATTCTGCGCGGAAAATGGCATCGAGCAGGAGTTCTCTGACACGTACA
CAACGCAGCAAAACGGTGCGATGGAGCGTAGCTGGCACAGCATATTCGAG
ATGGCAAGAGCCAACATGATCACCGCCAACATAGGTCGTCGATATTGGGC
GGAGGCGGTGCACTCGGCAGTGTACTGCCTAAAGCGCGCCCCGACGCGAC
CGCACAAC
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