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Homology
BLAST of mRNA_H-paniculata_contig4789.11857.1 vs. uniprot
Match: D8LQG8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQG8_ECTSI) HSP 1 Score: 264 bits (675), Expect = 6.030e-82 Identity = 144/228 (63.16%), Postives = 166/228 (72.81%), Query Frame = 3
Query: 282 CVSLLPPASPFLTVSLHPAVRTAAPS----RQEYSAD-SVRPRYTPYL--SAAEVNADIPGVADSRLAGWRTTVQTKDAEEQGSLEQGDV---SNLENISAACVEPLCGDVVEYPLADRVKEEAADGREKGVAVIVSVNKNRNDAWKLPEDILDLAELEVLCPDLDAEEKGVWMPDELEACAFARLGEMKVLKSSFNGALDKWKRWTIEDKLSEGCGARDAEWEYDML 935
C LL PA+PF + L P A P+ RQ + S RP + L AEV+AD+PG+ADSRLAGWR V +K A + + V ++ E + EP CGDVVEYPL D VK E+ DGREKGVAVIVS+NK RNDAWKLPEDILD AEL+VLCPDLD+EE+GVWM DELE CAFA+LGEMKVLKSSFNGA+DKWKRWTI D+LSEGCGARDAEWEYDML
Sbjct: 12 CALLLRPATPF--IRLAPPAGAADPAGAAHRQRHVRPVSARPHHARVLVNMMAEVDADVPGIADSRLAGWR--VGSKQAATTATEDTAAVDSDADSEGGAGESGEPGCGDVVEYPLTDLVKNESTDGREKGVAVIVSINKLRNDAWKLPEDILDKAELQVLCPDLDSEEEGVWMADELETCAFAKLGEMKVLKSSFNGAMDKWKRWTISDELSEGCGARDAEWEYDML 235
BLAST of mRNA_H-paniculata_contig4789.11857.1 vs. uniprot
Match: W7TJ40_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJ40_9STRA) HSP 1 Score: 101 bits (251), Expect = 1.330e-20 Identity = 63/173 (36.42%), Postives = 89/173 (51.45%), Query Frame = 3
Query: 432 DIPGVADSRLAGWRTTVQTKDAEEQG-SLEQGDVSNLENISAAC------VEPLCGDVVEYPLADRVKEEA-ADGREKGVAVIVSVNKNRNDAWKLPEDILDLAELEVLCPD--------LDAEEKGVWMPDELEACAFARLGEMKVLKSSFNGALDKWKRWTIEDKLSEGCG 902
D+P + DSRLAGWR + E G + +++E+ A P DVVEYPL D R +GV V++S N++R DA LP + +DL ++E L D L+ E+ VW DELE F +++ + S NG DKW+RW +E+ LSEGCG
Sbjct: 55 DLPELTDSRLAGWRLKKGAHGSGETGVEGDSASAASMEDTQAIVDRGTESFSPQQYDVVEYPLPSHAHGILDGDDRVRGVGVLLSNNRDRLDAASLPAEKIDLCQVEPLTLDPEGQWGSGLEGGEQQVWRKDELEPRVFVAYADLRKITSKQNGMADKWRRWILEEPLSEGCG 227
BLAST of mRNA_H-paniculata_contig4789.11857.1 vs. uniprot
Match: A0A2P6TYL2_CHLSO (DnaJ-like protein subfamily B member 5-like n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TYL2_CHLSO) HSP 1 Score: 84.3 bits (207), Expect = 6.390e-14 Identity = 51/112 (45.54%), Postives = 67/112 (59.82%), Query Frame = 3
Query: 576 GDVVEYPLADRVKEEAADGREKGVAVIVSVNKNRNDAWKLPEDILDLAELEVLCPDLDAEEKGV--WMPDELEACAFARLGEMKVLK-SSFNGALDKWKRWTIEDKLSEGCG 902
G VVEYPL+ + ++E DGR GV ++V N +R DA KLP+ +LDL E+E L EE G W+PDEL AF RLG ++ + +F+ D W TI LSEGCG
Sbjct: 264 GAVVEYPLSQQQRDELQDGRTHGVGLLVGRNCDRGDAAKLPQQVLDLCEIEPL----RQEEPGSTRWVPDELAPAAFPRLGGLRPIPVDAFDQRFDVW---TITAPLSEGCG 368
BLAST of mRNA_H-paniculata_contig4789.11857.1 vs. uniprot
Match: A0A2P6VMF5_9CHLO (Chaperone-like n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VMF5_9CHLO) HSP 1 Score: 75.5 bits (184), Expect = 1.360e-10 Identity = 43/97 (44.33%), Postives = 58/97 (59.79%), Query Frame = 3
Query: 567 PLCGDVVEYPLADRVKEEAADGREKGVAVIVSVNKNRNDAWKLPEDILDLAELEVLCPDLDAEEKGVWMPDELEACAFARLGEMKVLK-SSFNGALD 854
P G VVEYPL V+ E DGR GV ++V N +R DA +LPE+ LDL E+E L + ++ W+PDEL A+ RLGE++ L SF+ D
Sbjct: 389 PTAGTVVEYPLPAVVQAELQDGRSHGVGLLVGRNCDRGDARRLPEEALDLCEVEPLRQEEAGSDR--WVPDELSPSAYVRLGELRALPVDSFDQRFD 483
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Viridiplantae |
| Seed ortholog score | 88.6 |
| Seed ortholog evalue | 4.1e-15 |
| Seed eggNOG ortholog | 248742.XP_005648443.1 |
| Hectar predicted targeting category | signal peptide |
| EggNOG free text desc. | DnaJ molecular chaperone homology domain |
| EggNOG OGs | 380D8@33090,COG0484@1,KOG0715@2759 |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-10_005590.1 |
| COG Functional cat. | O |
| Best tax level | Viridiplantae |
| Best eggNOG OG | NA|NA|NA |
| Exons | 6 |
| Model size | 1624 |
| Cds size | 684 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4789.11857.1 >prot_H-paniculata_contig4789.11857.1 ID=prot_H-paniculata_contig4789.11857.1|Name=mRNA_H-paniculata_contig4789.11857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=228bp
MNGGGLLFLCVSLLPPASPFLTVSLHPAVRTAAPSRQEYSADSVRPRYTP
YLSAAEVNADIPGVADSRLAGWRTTVQTKDAEEQGSLEQGDVSNLENISA
ACVEPLCGDVVEYPLADRVKEEAADGREKGVAVIVSVNKNRNDAWKLPED
ILDLAELEVLCPDLDAEEKGVWMPDELEACAFARLGEMKVLKSSFNGALD
KWKRWTIEDKLSEGCGARDAEWEYDML* back to topmRNA from alignment at H-paniculata_contig4789:1363..6396- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4789.11857.1 ID=mRNA_H-paniculata_contig4789.11857.1|Name=mRNA_H-paniculata_contig4789.11857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5034bp|location=Sequence derived from alignment at H-paniculata_contig4789:1363..6396- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTCGAACGGACACTGCCCACACAATATTTTCGACGTTTCGTTTGTGGGA
TGTGGAGTACGACCAGAGGGTGCTAGCCAAGCAGCAGGCACAGCGTACCA
AGAAGCGGTGACGGTTGTCAGAACTAGCCTCTGGATACAGAAATCAGGCT
ATTGGGGGTGGTAGTCAGGCTTAAACGGACCCAATATCAGTATTTTTCAA
GCCTGTGCGAGCCTTCCTGTCTCAACAACAAGCTGGTTTGGAGCACACGC
GATCATGAACGGTGGTGGTCTACTATTTCTGTGTGTGAGCCTTTTACCAC
CGGCCTCACCGTTCCTTACTGTGTCACTTCACCCAGGTAATGATCAAGCT
GAAGGAGCTCTGGACTGGCGTTTGTGGAGCACGGAGTATCACATGAACCT
TGACCATTAAAATACTAGTGAGCCTCGCTATTGAACAAATATTTGTATGT
GCTGTCTGTGTATAAGTAGTTGTACATATCTGCCTCAATAACTCAACTAA
ATACTGTACTCTGAGCCTGCAGACGTAAGTCAGAGAGCCAGTTCATACAT
GACATGTTGTACATGACCAAGAGCCGCAAAAACACACACACACAATCCAG
AAGGTAGGTGAGCTGTATGACTTATCGTAGCCGCAATGTGGCTTAGCTTG
CCATAGGACTTGATCATACAAGTATTTTTAATCCGTGTGTTGCTACCTGG
GATGCAAATGAATACGATTGTAGCGACTGTGACAGAAATGGGCAAAATAC
GCGAATAGTCCGAATGTCTAACAGTTACTACGCTCGCATGGCTTGTTGGT
CTCTGGATCAACTCTTATGCTCCCTCCACATTTGCCCCTCTCTTATGTGT
ATGGATGTGTTGTACGGACTGCAGCTGTCCGAACTGCTGCACCCAGTAGG
CAGGAGTACAGTGCGGATTCCGTGAGGCCTCGTTACACGCCGGTAAGCCC
TATTTGCATCGTGTCTGCTGGATACTGTACACTGGATACTACTGTAGCTC
TACCCGATTTAAGAAGAAACCAAAATATGCTGCGGTCTACATGTTTGCTC
TCCTAGACCCGTAACAAAGGAGACCCGTAACAAAGGAGACCCGTAACAAA
GGAGACCCGTAACAAAGGAGACGAACCACTTCTCTGTCCGTGGCACAGAC
AGTACTTGTTCCCTAATCCCCTGGAGGGTTGAAAATCACGATTACCTGTT
GTCTTCACAATTATTACCGCGGTTAGAAGCCAAAATGGCCCCAACAAGGC
CACCACCCAAACTATCATACGTCGGACGGAGACATACCCGTACGATCCGT
GGGGTATGAATCAGTGGTGGATAGATATGTGCCAATCGTCAGTGGGGTAC
ACACCACTACTGTCTGTAGTGGCGAATCATATAAATATGAAACACACGAT
GTATGAATCGCTAGTGAAGAAACATGTACGGACCACTAGTGCAGATGATG
TGCGAACGACGCAGGGGTACGGGTCACCGGTGCCAAACATGTACGGATCA
AACACGTTGTACGCATCGTTATTGCGGATCATATGCGAACGATCTGCGGA
TCAAACATGGTGTACGGACAGCTTGTGCAAAACATGAATTGAGGATCCAT
CTCGAACGGATCAGTGTAGCAAAATTGTACCAACGATTCATCCGCTGCGG
ATCAGTTGACGGATCACTGGGCAAACGATTCGCAACGGACGAAGCACAGG
TGCAAATATGTATAAATAATTCGTAGCGTACAATTCCGTCCTGTGAAAAC
CAAGTTGCTGCCTCACGGTAACGCAAACTCCGAAATAGCAACCACAATAC
CCTGAACGGTAACAATTTTTCCCAAACCATAATACATTTTTTGCCCGACG
GTAAAACATTGTCGACAAATGGAACTTTCCCCTCCGAAACATCACTTATT
GCGCCGATAATGCGTGCACGATGATGATTCGTCATCTATGGATCAATTTT
ACAGATCATGGGAAAACGGTCCGTAGTGTACGGGTGAGTTGTACGGGTCA
TGGACAAACGATCGGTAGGGTATGGACCACCGGTGCAAAACATGTGCGAA
TCTAGTACCGTGTACGGATGGCTTGTGATGAACATGTACTACCGAGCCGT
GGGGTAAGGATCACACTGTAGAAGCATGTACGAACCAAGCATGGTGTGTG
GCAAATATGTAGTACCGATCCGATCACAATGCAGAAGCATGTACGGATCG
AACACGGTAAAGGGATGGCTGATTGCAAAAATGTACTACCGATCCGTGGG
GATGCGGATCACCAATCCAGAAACATCCACGGATCGTACCCCGGTGTATG
GCTCGCTTGTGGGAAACATGTACAAATAAAACACGACATACGGATCAGGC
GATCTACCGTATAAATGGCTGGTATGATCTGTGTACGATCCAATCCGAGT
ACAATCTGATCCGTCCGACGTGTGCAAACTATCAAACTATGCGTTTCTTT
TACCTCGAATTTTATGTGTTTCTGCGAATAAAATTTCTGGTACGTTTATA
GTACCTCTCGGCAGCCGAAGTGAACGCGGATATCCCAGGCGTTGCCGACT
CCAGACTGGCAGGATGGAGAACAACAGTACAGACAAAGGATGCGGAAGAA
CAAGGTTCCCTTGAGCAGGGTGATGTTTCGAATTTGGAGAACATATCTGC
CGCCTGCGTAGAGCCTTTATGCGGCGATGTGGTCGAGGTGCGAGAATGAT
GGACATGTGTTACATACCAGTTATTTTTGAAGTTATCATTCATATACAGA
ATGCCATCAATTTGTCCTCCTCGCTCGCTTGCGAAGAGAGGGCCAACTGG
TGACAAGCTTCGCGCAAATGATCTGTTCTATATTTCAGTACGCTCTACAT
GGATGTACAGCTGAGCACAGTATTAGTATCTGGTGCGTTTGGTGCGAAGG
AATGGTTACTTCAATTTTTTCTGGTGGTGTGACTACAACGTATTTATGAT
TGATTTGCACTCGAGATGTGGGCCAGTTCCAACAGGTGGAACTATGCTAC
CGCCGCGCCAAAGAGAGCAAAGCGATTTTCCTGGCGTACAATATATATTA
GTGTCCAACCTCGTGTGCTTCCTTGGACACTTCGGCGTCTCATCCTGTCT
ATCTGCACTTCGTTTGCATTGCTACTGTGGACGTGATCATGGGTATGTAC
GGTATCCCTCATAACGCGACCATGGAGTAGTACCCTTTGGCGGATCGTGT
GAAGGAGGAAGCCGCAGACGGAAGGGAGAAAGGTGTAGCTGTAATTGTGA
GCGTCAACAAAAATCGCAACGATGCGTGGAAGCTACCGGAAGATATTCTC
GACCTCGCTGAGCTGGAGGTGACCATATTTGGAGCTTTCCGGAAGGGGAT
GCCAAACTTGTTGGCAGGATCCCCTTCGTGGAGTCAGAAGCATGTAGTCA
GACGAATCTCCTGTGCGAAATAACGTCGCCCGAGGTTTGATGCTATTTTT
AATAAGTGTCGTGTCGAGGGATACACCTTATCGTTGCTTTCGTTGAGGGA
TCGACTGTTCGCAGTTTGGAGTCGATCCTTTGTCAGGACTTATTTTTACC
AACTTCCTACGATAGATCTATTCGGCGATCCGTTAGCTTTGGCTACACGT
TGTTTATGGTGTCACAGCTTCTGGTCGTTTTTACGCAGCGGTCTCCTCCC
GGGTATCCCCAGTTTTGACCGCTCTTTCTTGCTGGTAAATGTTTGTGGGC
GAAGGTGTTATGTCCGGATCTCGATGCGGAGGAAAAGGGCGTTTGGATGC
CGGACGAGCTTGAGGCCTGCGCATTCGCAAGGCTTGGGGAAATGAAAGTG
GTATGCTGGTTTGTCGCAAAGGCGTTTAACTGGTTCAAAGAACCACTAGT
GGCATCATCCAGTAATTGCACTACTAGTATACTTCGGGGCAACGCAACAT
ATGTTCCAATATATGAGTGGTAGCCTTGCCGCGGGGGGGAAGCTAAAATG
GCTGTGTTGGCGACAGAGAGAATAGGGTAGGACAGTTTTGATATTGGTAC
GTTGGCTTAACCAGCTCTGACAGGACGACTGGTGCGTGTCAGCTGTTTTC
ACCTTCCTCTGCCAGTGTTCTTGGCATGGAGGAGGATTGTCGGCACTACT
GATTGGGTGTCCTGTTTTAATATTAGGGGATATCCTGTTTCACCAATCCG
TCGGCGCTTCGCTTCTCTCCCTAGCCGGTTGATTCCCAGCTGAAGCTCAA
ATTCTCGTCGTGCGTTCGCTCTCTTCTTGCCCAGTTGAAGTCGAGTTTTA
ACGGGGCCCTGGACAAATGGAAAAGGTGGACGATCGAAGACAAGCTGAGC
GAGGGTTGCGGCGCGAGAGACGCCGAGTGGGAGTACGACATGCTGTAGGA
TTTCTCTTATTGTCTTACGGATGTGGCTCATGTGTTATTCGGCTACCCAC
CGCGGTATGTACCACCATGCGCACTTTAACGGTCACAGTTCACGTCGCGT
TGATATTTTTCTGTTCTCGATCCGGCGTGCTACAAGCAGAAACTTACATT
AAGCTTTACTGTCTTTTCGGGAAAGACCTTGCGTCGGATCATACTCTATT
ATGTTACGGTCTGGTCTTGCCTCGAGGCCATTGTACATGTGTTTTTCGCT
GTCGCCTGTGTGTAGGTGCGTTTTTTAGCCGTTAGTCTCTGTACTGTTGT
CTGCTTAACATACAACGATTCGGTGTGAGGGTTGCGCAAACAATTGCTAC
GTTTGGCCGGGTTTTTTTCTTTTTAAATCAAAGTAAATAGCTCTACCTAG
ACTAGAATACAGGATGAAACCTACAGGCCTCTATCTGTTTCGTGCAAAAG
GGAAGCTGTTTCTAGCGCATCTCGAAGGTAGACATAAGTGCCCTACGCAA
TAATCGTACTGCGATATTCTTGTGTCTCTTGCTGCTTTGTGCTCATAACT
TCGTGATAATTCCTTGTCAACTTAGATTTTGCAGGTATTGCGTTCGGTTT
GTTGATGACAACACGCACACGGCCTGAGGATGAAAGGCCCCACAGACATA
TTGCTCTAGATCCCCGAGATGACACATTCTCAAA back to topCoding sequence (CDS) from alignment at H-paniculata_contig4789:1363..6396- >mRNA_H-paniculata_contig4789.11857.1 ID=mRNA_H-paniculata_contig4789.11857.1|Name=mRNA_H-paniculata_contig4789.11857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1368bp|location=Sequence derived from alignment at H-paniculata_contig4789:1363..6396- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGGTGGTGGTCTACTATTTCTGTGTGTGAGCCTTTTACCACCGGC
CTCACCGTTCCTTACTGTGTCACTTCACCCAGATGAACGGTGGTGGTCTA
CTATTTCTGTGTGTGAGCCTTTTACCACCGGCCTCACCGTTCCTTACTGT
GTCACTTCACCCAGCTGTCCGAACTGCTGCACCCAGTAGGCAGGAGTACA
GTGCGGATTCCGTGAGGCCTCGTTACACGCCGCTGTCCGAACTGCTGCAC
CCAGTAGGCAGGAGTACAGTGCGGATTCCGTGAGGCCTCGTTACACGCCG
TACCTCTCGGCAGCCGAAGTGAACGCGGATATCCCAGGCGTTGCCGACTC
CAGACTGGCAGGATGGAGAACAACAGTACAGACAAAGGATGCGGAAGAAC
AAGGTTCCCTTGAGCAGGGTGATGTTTCGAATTTGGAGAACATATCTGCC
GCCTGCGTAGAGCCTTTATGCGGCGATGTGGTCGAGTACCTCTCGGCAGC
CGAAGTGAACGCGGATATCCCAGGCGTTGCCGACTCCAGACTGGCAGGAT
GGAGAACAACAGTACAGACAAAGGATGCGGAAGAACAAGGTTCCCTTGAG
CAGGGTGATGTTTCGAATTTGGAGAACATATCTGCCGCCTGCGTAGAGCC
TTTATGCGGCGATGTGGTCGAGTACCCTTTGGCGGATCGTGTGAAGGAGG
AAGCCGCAGACGGAAGGGAGAAAGGTGTAGCTGTAATTGTGAGCGTCAAC
AAAAATCGCAACGATGCGTGGAAGCTACCGGAAGATATTCTCGACCTCGC
TGAGCTGGAGTACCCTTTGGCGGATCGTGTGAAGGAGGAAGCCGCAGACG
GAAGGGAGAAAGGTGTAGCTGTAATTGTGAGCGTCAACAAAAATCGCAAC
GATGCGTGGAAGCTACCGGAAGATATTCTCGACCTCGCTGAGCTGGAGGT
GTTATGTCCGGATCTCGATGCGGAGGAAAAGGGCGTTTGGATGCCGGACG
AGCTTGAGGCCTGCGCATTCGCAAGGCTTGGGGAAATGAAAGTGGTGTTA
TGTCCGGATCTCGATGCGGAGGAAAAGGGCGTTTGGATGCCGGACGAGCT
TGAGGCCTGCGCATTCGCAAGGCTTGGGGAAATGAAAGTGTTGAAGTCGA
GTTTTAACGGGGCCCTGGACAAATGGAAAAGGTGGACGATCGAAGACAAG
CTGAGCGAGGGTTGCGGCGCGAGAGACGCCGAGTGGGAGTACGACATGCT
GTAGTTGAAGTCGAGTTTTAACGGGGCCCTGGACAAATGGAAAAGGTGGA
CGATCGAAGACAAGCTGAGCGAGGGTTGCGGCGCGAGAGACGCCGAGTGG
GAGTACGACATGCTGTAG back to top
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