mRNA_H-paniculata_contig4788.11856.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4788.11856.1
Unique NamemRNA_H-paniculata_contig4788.11856.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4788.11856.1 vs. uniprot
Match: D8LG21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG21_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 4.130e-13
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 2 
Query:  101 SASGYCEFKMIKSDVRFGNKEGGGTHFGSAERFAY-RTQYVSDAMYTIPAAKAP 259
            S +G    KM KSDVRFGNKEGGGT+FGS ERFA+ + +Y SDAMYTIP  KAP
Sbjct:   56 SGTGGVGVKMKKSDVRFGNKEGGGTNFGSEERFAWQKCKYASDAMYTIPDVKAP 109
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BLAST of mRNA_H-paniculata_contig4788.11856.1 vs. uniprot
Match: A0A6H5JC23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC23_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.940e-12
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 2 
Query:  128 MIKSDVRFGNKEGGGTHFGSAERFAY-RTQYVSDAMYTIPAAKAP 259
            M KSDVRFGNKEGGGT+FGS ERFA+ + +Y SDAMYTIP  KAP
Sbjct:    1 MKKSDVRFGNKEGGGTNFGSEERFAWQKCKYASDAMYTIPDVKAP 45
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4788.11856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LG21_ECTSI4.130e-1368.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JC23_9PHAE3.940e-1275.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4788contigH-paniculata_contig4788:12758..13016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue1.9e-10
Seed eggNOG ortholog2880.D8LG21
Hectar predicted targeting categoryother localisation
EggNOG OGs2DCNP@1,2S5KF@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size260
Cds size246
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930418.938902-UTR-H-paniculata_contig4788:12757..127701622930418.938902-UTR-H-paniculata_contig4788:12757..12770Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4788 12758..12770 +
1691481283.396477-UTR-H-paniculata_contig4788:12757..127701691481283.396477-UTR-H-paniculata_contig4788:12757..12770Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4788 12758..12770 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930418.9540265-CDS-H-paniculata_contig4788:12770..130161622930418.9540265-CDS-H-paniculata_contig4788:12770..13016Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4788 12771..13016 +
1691481283.408182-CDS-H-paniculata_contig4788:12770..130161691481283.408182-CDS-H-paniculata_contig4788:12770..13016Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4788 12771..13016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4788.11856.1prot_H-paniculata_contig4788.11856.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4788 12771..13016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4788.11856.1

>prot_H-paniculata_contig4788.11856.1 ID=prot_H-paniculata_contig4788.11856.1|Name=mRNA_H-paniculata_contig4788.11856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
MNKNMVGVQQQSKRRARTAGAAPRLRDGPSASGYCEFKMIKSDVRFGNKE
GGGTHFGSAERFAYRTQYVSDAMYTIPAAKAP
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mRNA from alignment at H-paniculata_contig4788:12758..13016+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4788.11856.1 ID=mRNA_H-paniculata_contig4788.11856.1|Name=mRNA_H-paniculata_contig4788.11856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=259bp|location=Sequence derived from alignment at H-paniculata_contig4788:12758..13016+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTATAATACAAATGAACAAAAACATGGTTGGAGTGCAACAACAATCGA
AAAGGCGGGCGAGGACGGCGGGAGCAGCACCGCGACTACGAGATGGCCCC
TCGGCCTCAGGATATTGCGAGTTTAAGATGATTAAGAGTGACGTGAGATT
TGGGAATAAGGAAGGAGGTGGGACACACTTCGGTAGTGCGGAGCGGTTTG
CGTACAGGACCCAGTACGTGTCAGACGCTATGTACACGATACCTGCGGCT
AAGGCGCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig4788:12758..13016+

>mRNA_H-paniculata_contig4788.11856.1 ID=mRNA_H-paniculata_contig4788.11856.1|Name=mRNA_H-paniculata_contig4788.11856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig4788:12758..13016+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACAAAAACATGGTTGGAGTGCAACAACAATCGAAAAGGCGGGCGAG
GACGGCGGGAGCAGCACCGCGACTACGAGATGGCCCCTCGGCCTCAGGAT
ATTGCGAGTTTAAGATGATTAAGAGTGACGTGAGATTTGGGAATAAGGAA
GGAGGTGGGACACACTTCGGTAGTGCGGAGCGGTTTGCGTACAGGACCCA
GTACGTGTCAGACGCTATGTACACGATACCTGCGGCTAAGGCGCCGATGA
ACAAAAACATGGTTGGAGTGCAACAACAATCGAAAAGGCGGGCGAGGACG
GCGGGAGCAGCACCGCGACTACGAGATGGCCCCTCGGCCTCAGGATATTG
CGAGTTTAAGATGATTAAGAGTGACGTGAGATTTGGGAATAAGGAAGGAG
GTGGGACACACTTCGGTAGTGCGGAGCGGTTTGCGTACAGGACCCAGTAC
GTGTCAGACGCTATGTACACGATACCTGCGGCTAAGGCGCCG
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