mRNA_H-paniculata_contig47627.11813.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47627.11813.1
Unique NamemRNA_H-paniculata_contig47627.11813.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig47627.11813.1 vs. uniprot
Match: A0A4D8ZGL2_SALSN (Cis-zeatin O-glucosyltransferase n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8ZGL2_SALSN)

HSP 1 Score: 68.9 bits (167), Expect = 4.220e-10
Identity = 50/201 (24.88%), Postives = 93/201 (46.27%), Query Frame = 1
Query:   25 CGRCSKPGHDLYACPQITDEDACLAEAETEIKLEEALKVDLGEDEFIGAY--IASTSTTGKEEVLSVDSEGLGYRDVGEMEIWICDNGATKHMTHNSDFLFNYQECDG-HVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVACIPLLSHRLLHLGKFADFGHEYRCSREGLRISLETGRVLSAERFGSLDVMRGSPV 618
            C  C +PGH    CP+I                    K  LG+ E    Y  +A       EE L++ ++   + +    ++WI D+GA+ H+  + ++   Y++ DG +V +A+ +   + G+G + ++     + V   L  V  +P ++  L+ L  F   G  ++     +RI   +  VL+A ++G+L V+RGS V
Sbjct:   64 CRYCKEPGHRKADCPKI--------------------KKKLGKKEDANGYETVAEADDANSEEELALVADEQPHCN----DVWILDSGASYHLFPHMEYFTTYEQIDGGNVTMANSDVCKVVGIGSIRIRTH---DGVFCTLNDVRHVPQMTKNLISLNTFDSKGFSFKGESGVMRILKGSKMVLTALKWGTLYVLRGSIV 237          
BLAST of mRNA_H-paniculata_contig47627.11813.1 vs. uniprot
Match: A0A4D8ZH87_SALSN (CCHC-type domain-containing protein n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8ZH87_SALSN)

HSP 1 Score: 62.8 bits (151), Expect = 4.650e-8
Identity = 49/199 (24.62%), Postives = 88/199 (44.22%), Query Frame = 1
Query:   25 CGRCSKPGHDLYACPQITDEDACLAEAETEIKLEEALKVDLGEDEFIGAYIASTSTTGKEEVLSVDSEGLGYRDVGEMEIWICDNGATKHMTHNSDFLFNYQECDG-HVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVACIPLLSHRLLHLGKFADFGHEYRCSREGLRISLETGRVLSAERFGSLDVMRGSPV 618
            C  C KPGH    CPQI                    K+   +D    A +A       EE L++ ++   + +    ++WI D+GA+ H+  + ++   Y + DG +V +A+     + G+G +  +     + V   L  V  +P ++  ++ L      G  ++     +RI   +  VL+A++ GSL V+RGS V
Sbjct:   69 CRYCKKPGHWKIDCPQIKK------------------KLGKKKDANGSATVAEADDANSEEELALVADEQPHCN----DVWILDSGASYHLCPHREYFTTYGQIDGGNVTMANSVVCKVVGIGSIKTRTH---DGVFCTLNDVRHVPQMTKNMISLSTLDSKGLSFKGESGVMRILKGSKVVLTAQKRGSLYVLRGSIV 242          
BLAST of mRNA_H-paniculata_contig47627.11813.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME)

HSP 1 Score: 62.0 bits (149), Expect = 9.350e-8
Identity = 52/193 (26.94%), Postives = 79/193 (40.93%), Query Frame = 1
Query:    4 RECPNVYCGRCSKPGHDLYAC-PQITDEDACLAEAETEIKLEEALKVDLGEDEFIGAYIASTSTTGKEEVLSVDSEGLGYRDVGEMEIWICDNGATKHMTHNSDFLFNYQEC-DGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVACIPLLSHRLLHLGKFADFGHEYRCSREGLRISLETGRVLSA 576
            R    + C  C K GH +  C  +  DED  +   E +   E                 ++T      EV+  +   L  +DV     WI D+GA++HMTH S+++ N Q   D HV L DG +  + G G +++Q   D + +   L  V  +P L+  L  +G  A     YR       + L     L A
Sbjct:  222 RSKKEIECFYCHKLGHYIKDCRKKRRDEDQGIRSKEKQKNNE-----------------SNTEAAFSAEVIEKEILNLEVKDV-----WILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVG--ACMNKNYRVVFTNNSVKLFLNNALKA 390          
BLAST of mRNA_H-paniculata_contig47627.11813.1 vs. uniprot
Match: A0A4D9AUL3_SALSN (Uncharacterized protein n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9AUL3_SALSN)

HSP 1 Score: 58.2 bits (139), Expect = 2.010e-6
Identity = 47/197 (23.86%), Postives = 88/197 (44.67%), Query Frame = 1
Query:   25 CGRCSKPGHDLYACPQITDEDACLAEAETEIKLEEALKVDLGEDEFIGAYIASTSTTGKEEVLSVDSEGLGYRDVGEMEIWICDNGATKHMTHNSDFLFNYQECD-GHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVACIPLLSHRLLHLGKFADFGHEYRCSREGLRISLETGRVLSAERFGSLDVMRGS 612
            C    +PGH    CP+I                    K+   ED    A +A       EE L++ +    + +    ++WI D+GA+ H+  + ++   Y++ D G+V +A+     + G+G + ++     + V   L  V  +P ++  L+ L  F   G  ++     +RI   +  VL+A ++G+L V+RGS
Sbjct:   69 CRYFKEPGHWKADCPKIKK------------------KLGKKEDANGSATVAEADDANLEEELALVANEQPHCN----DVWILDSGASYHLCPHREYFTTYEQIDRGNVTMANSVVCKVVGIGSIRIRTH---DGVFCTLNDVRHVPQMTKNLISLSTFDSRGFIFKGEGGVMRILKGSKVVLTALKWGTLYVLRGS 240          
BLAST of mRNA_H-paniculata_contig47627.11813.1 vs. uniprot
Match: A0A5D3DBV2_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DBV2_CUCME)

HSP 1 Score: 56.6 bits (135), Expect = 2.420e-6
Identity = 46/156 (29.49%), Postives = 77/156 (49.36%), Query Frame = 1
Query:  157 EFIGAYIASTSTTGKEEVLSVDSEGLGYRDVGEMEIWICDNGATKHMTHNSDFLFNYQECD-GHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVACIPLLSHRLLHLGKFADFGHEYRCSREGLRISLET-GRVLSAERFGSLDVMRGSPV 618
            E IG Y  ST TT       V    + ++D+   + WI D+  T HMTHN DFL N+Q+ D G + L D     ++G     +Q     +++ + LT V  +P L   L+ LG+    G   +   E ++++  +  ++    R+G L V++G+ V
Sbjct:   25 EAIGGY-DSTETTXXXXXTKVLM--VSHKDI--QDAWIMDSRCTFHMTHNLDFLINFQKSDRGTILLGDNGTCDVKGT--CSVQITTHDKMIRI-LTNVRYVPKLKCNLISLGELDRSGCTIKSENEVMKVTKGSLVKLRGTLRYG-LYVLKGTTV 171          
BLAST of mRNA_H-paniculata_contig47627.11813.1 vs. uniprot
Match: A0A5A7U112_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7U112_CUCME)

HSP 1 Score: 56.2 bits (134), Expect = 6.110e-6
Identity = 37/129 (28.68%), Postives = 59/129 (45.74%), Query Frame = 1
Query:  214 SVDSEGLGYRDVGEMEIWICDNGATKHMTHNSDFLFNYQECDGH-VRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVACIPLLSHRLLHLGKFADFGHEYRCSREGLRISLETGRVLSAERFGSLD 597
            SV+   + +RD+     WI D+G   HMTHN DFL N+Q+ D   V L D +   ++G G +  Q      ++ M LT V  +P L   L+ L +           + G  +S      L  ++  ++D
Sbjct:   53 SVEVLMVSHRDI--QNAWIMDSGCMYHMTHNRDFLINFQKSDREKVLLGDNSTYDVKGTGSV--QIATHDRMIKM-LTNVRYVPELKRNLISLNEL---------DKSGTTVSGSAAMTLEQQKHHTID 167          
BLAST of mRNA_H-paniculata_contig47627.11813.1 vs. uniprot
Match: A0A178U605_ARATH (ULP_PROTEASE domain-containing protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178U605_ARATH)

HSP 1 Score: 55.1 bits (131), Expect = 2.560e-5
Identity = 40/147 (27.21%), Postives = 65/147 (44.22%), Query Frame = 1
Query:   25 CGRCSKPGHDLYAC---------PQITDEDACLAEAETEIKLEEALKVDLGEDEFIGAYIASTSTTGK-EEVLSVDSEGLGYRDVGEMEIWICDNGATKHMTHNSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLM 435
            C  C K GH    C          +  D  A L++   E + +           F G Y+  +      + ++S+   G+ +         + D+GA+ HM  NS+ L N +   GHV +A+G+++PIEG+G L L F  DS+   M
Sbjct:  253 CDHCKKKGHTKDKCWLLHPHLKPAKFKDSRAHLSQETHEEQSQTGSSKGETSTSF-GDYVRKSDLEALIKSIVSLKESGITFSSQTSSSSIVIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSKAFFM 397          
BLAST of mRNA_H-paniculata_contig47627.11813.1 vs. uniprot
Match: A0A6A4Z1R3_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z1R3_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.400e-5
Identity = 40/144 (27.78%), Postives = 69/144 (47.92%), Query Frame = 1
Query:  148 GEDEFIGAYIASTSTTGKEEVLSVDSEGLGYRDVGEMEIWICDNGATKHMTHNSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVACIPLLSHRLLHLGKFADFGHEYRCSREGLRISLETGRVLSAE 579
            G DE IG+ +       K ++L+++ +       GE ++ I D+GA+ HMT   + LF+ +EC   VRLA+  R+ ++ +G   ++    S  V    T V  +P L H L+ +              +G   S++ G  +SAE
Sbjct:   68 GSDEEIGSEV-------KIDMLNLNED---TNHNGEEQMTIIDSGASSHMTGYYNILFDIEECQRQVRLANHQRIDVDKMGKFKIKNPNGSTCVF---TNVLYVPTLHHTLVSVPALTS-KERVTVQYKGKTCSIKVGDRVSAE 197          
BLAST of mRNA_H-paniculata_contig47627.11813.1 vs. uniprot
Match: Q9FWZ5_ARATH (Putative retroelement polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9FWZ5_ARATH)

HSP 1 Score: 53.9 bits (128), Expect = 6.170e-5
Identity = 39/146 (26.71%), Postives = 62/146 (42.47%), Query Frame = 1
Query:   25 CGRCSKPGHDLYAC--------PQITDEDACLAEAETEIKLEEALKVDLGEDEFIGAYIASTSTTGK-EEVLSVDSEGLGYRDVGEMEIWICDNGATKHMTHNSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLM 435
            C  C K GH    C        P    +       ET  +  +A           G Y+  +      + ++S+   G+ +         + D+GA+ HM  NS+ L N +   GHV +A+G+++PIEG+G L L F  DS+   M
Sbjct:  240 CDHCKKKGHTKDKCWLLHPHLKPAKFKDSRAHFSQETHEEQSQAGSSKGETSTSFGDYVRKSDLEALIKSIVSLKESGITFSSQTSSGSIVIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSKAFFM 384          
BLAST of mRNA_H-paniculata_contig47627.11813.1 vs. uniprot
Match: A0A397FGU2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FGU2_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 8.260e-5
Identity = 27/77 (35.06%), Postives = 43/77 (55.84%), Query Frame = 1
Query:  250 GEMEIWICDNGATKHMTHNSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVACIPLLSHRL 480
            GE ++ I D+GA+ HMT   + LF+ +EC  HVRLA+  R+ ++ +G   ++    S+      T V  +P L H L
Sbjct:  193 GEEQVTIIDSGASSHMTGYHNILFDIEECQRHVRLANHQRIAVDMMGKFRIKNPNGSKCFF---TNVLYVPTLRHTL 266          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47627.11813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A4D8ZGL2_SALSN4.220e-1024.88Cis-zeatin O-glucosyltransferase n=1 Tax=Salvia sp... [more]
A0A4D8ZH87_SALSN4.650e-824.62CCHC-type domain-containing protein n=1 Tax=Salvia... [more]
A0A151ITN2_9HYME9.350e-826.94Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=... [more]
A0A4D9AUL3_SALSN2.010e-623.86Uncharacterized protein n=1 Tax=Salvia splendens T... [more]
A0A5D3DBV2_CUCME2.420e-629.49Retrovirus-related Pol polyprotein from transposon... [more]
A0A5A7U112_CUCME6.110e-628.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A178U605_ARATH2.560e-527.21ULP_PROTEASE domain-containing protein n=1 Tax=Ara... [more]
A0A6A4Z1R3_9STRA5.400e-527.78Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
Q9FWZ5_ARATH6.170e-526.71Putative retroelement polyprotein n=1 Tax=Arabidop... [more]
A0A397FGU2_9STRA8.260e-535.06Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47627contigH-paniculata_contig47627:295..915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue9.9e-08
Seed eggNOG ortholog67593.Physo138912
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size621
Cds size621
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930413.55118-CDS-H-paniculata_contig47627:294..9151622930413.55118-CDS-H-paniculata_contig47627:294..915Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47627 295..915 -
1691481280.910171-CDS-H-paniculata_contig47627:294..9151691481280.910171-CDS-H-paniculata_contig47627:294..915Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47627 295..915 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47627.11813.1prot_H-paniculata_contig47627.11813.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47627 295..915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47627.11813.1

>prot_H-paniculata_contig47627.11813.1 ID=prot_H-paniculata_contig47627.11813.1|Name=mRNA_H-paniculata_contig47627.11813.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=207bp
RRECPNVYCGRCSKPGHDLYACPQITDEDACLAEAETEIKLEEALKVDLG
EDEFIGAYIASTSTTGKEEVLSVDSEGLGYRDVGEMEIWICDNGATKHMT
HNSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQV
ACIPLLSHRLLHLGKFADFGHEYRCSREGLRISLETGRVLSAERFGSLDV
MRGSPVC
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mRNA from alignment at H-paniculata_contig47627:295..915-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47627.11813.1 ID=mRNA_H-paniculata_contig47627.11813.1|Name=mRNA_H-paniculata_contig47627.11813.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=621bp|location=Sequence derived from alignment at H-paniculata_contig47627:295..915- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACGGGAATGCCCCAACGTGTACTGTGGGCGATGTAGTAAGCCTGGTCA CGACTTGTACGCGTGTCCCCAGATCACCGATGAAGATGCTTGTTTGGCTG AAGCTGAAACGGAGATTAAACTTGAAGAGGCGCTCAAGGTTGACCTGGGC GAAGACGAGTTCATCGGGGCATACATCGCGTCGACTTCCACCACAGGCAA GGAAGAGGTTTTGTCTGTGGACTCTGAGGGGTTAGGATATCGTGACGTGG GGGAGATGGAGATCTGGATTTGTGATAATGGTGCAACGAAACACATGACC CATAATTCAGATTTTCTTTTTAATTACCAGGAATGTGATGGGCATGTACG CCTTGCAGATGGTAACCGTCTCCCGATCGAAGGAGTTGGCATGCTGTTCC TTCAATTTCGATTTGACTCCGAGGTTGTTTTGATGAAGTTAACTCAGGTT GCGTGCATACCACTCCTCAGTCATCGTCTCCTACATCTCGGGAAATTCGC GGACTTTGGTCATGAATATAGGTGTTCGCGGGAAGGGCTCAGAATTAGCC TTGAAACAGGGAGAGTTCTGAGTGCTGAGCGATTTGGTAGCCTTGACGTG ATGCGAGGGTCGCCAGTTTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig47627:295..915-

>mRNA_H-paniculata_contig47627.11813.1 ID=mRNA_H-paniculata_contig47627.11813.1|Name=mRNA_H-paniculata_contig47627.11813.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at H-paniculata_contig47627:295..915- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACGGGAATGCCCCAACGTGTACTGTGGGCGATGTAGTAAGCCTGGTCA
CGACTTGTACGCGTGTCCCCAGATCACCGATGAAGATGCTTGTTTGGCTG
AAGCTGAAACGGAGATTAAACTTGAAGAGGCGCTCAAGGTTGACCTGGGC
GAAGACGAGTTCATCGGGGCATACATCGCGTCGACTTCCACCACAGGCAA
GGAAGAGGTTTTGTCTGTGGACTCTGAGGGGTTAGGATATCGTGACGTGG
GGGAGATGGAGATCTGGATTTGTGATAATGGTGCAACGAAACACATGACC
CATAATTCAGATTTTCTTTTTAATTACCAGGAATGTGATGGGCATGTACG
CCTTGCAGATGGTAACCGTCTCCCGATCGAAGGAGTTGGCATGCTGTTCC
TTCAATTTCGATTTGACTCCGAGGTTGTTTTGATGAAGTTAACTCAGGTT
GCGTGCATACCACTCCTCAGTCATCGTCTCCTACATCTCGGGAAATTCGC
GGACTTTGGTCATGAATATAGGTGTTCGCGGGAAGGGCTCAGAATTAGCC
TTGAAACAGGGAGAGTTCTGAGTGCTGAGCGATTTGGTAGCCTTGACGTG
ATGCGAGGGTCGCCAGTTTGTCGACGGGAATGCCCCAACGTGTACTGTGG
GCGATGTAGTAAGCCTGGTCACGACTTGTACGCGTGTCCCCAGATCACCG
ATGAAGATGCTTGTTTGGCTGAAGCTGAAACGGAGATTAAACTTGAAGAG
GCGCTCAAGGTTGACCTGGGCGAAGACGAGTTCATCGGGGCATACATCGC
GTCGACTTCCACCACAGGCAAGGAAGAGGTTTTGTCTGTGGACTCTGAGG
GGTTAGGATATCGTGACGTGGGGGAGATGGAGATCTGGATTTGTGATAAT
GGTGCAACGAAACACATGACCCATAATTCAGATTTTCTTTTTAATTACCA
GGAATGTGATGGGCATGTACGCCTTGCAGATGGTAACCGTCTCCCGATCG
AAGGAGTTGGCATGCTGTTCCTTCAATTTCGATTTGACTCCGAGGTTGTT
TTGATGAAGTTAACTCAGGTTGCGTGCATACCACTCCTCAGTCATCGTCT
CCTACATCTCGGGAAATTCGCGGACTTTGGTCATGAATATAGGTGTTCGC
GGGAAGGGCTCAGAATTAGCCTTGAAACAGGGAGAGTTCTGAGTGCTGAG
CGATTTGGTAGCCTTGACGTGATGCGAGGGTCGCCAGTTTGT
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