mRNA_H-paniculata_contig47443.11789.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47443.11789.1
Unique NamemRNA_H-paniculata_contig47443.11789.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47443.11789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47443contigH-paniculata_contig47443:535..1410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size878
Cds size441
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930409.9600658-UTR-H-paniculata_contig47443:534..9691622930409.9600658-UTR-H-paniculata_contig47443:534..969Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47443 535..969 +
1691481279.1085327-UTR-H-paniculata_contig47443:534..9691691481279.1085327-UTR-H-paniculata_contig47443:534..969Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47443 535..969 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930409.976245-CDS-H-paniculata_contig47443:969..14101622930409.976245-CDS-H-paniculata_contig47443:969..1410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47443 970..1410 +
1691481279.1173599-CDS-H-paniculata_contig47443:969..14101691481279.1173599-CDS-H-paniculata_contig47443:969..1410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47443 970..1410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47443.11789.1prot_H-paniculata_contig47443.11789.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47443 970..1410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47443.11789.1

>prot_H-paniculata_contig47443.11789.1 ID=prot_H-paniculata_contig47443.11789.1|Name=mRNA_H-paniculata_contig47443.11789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
MIVSNPTNVALPVGRAPNFAGASTAAKRPQCGFVDQVLPSHRSAKRCRVA
ATHTLAPQCLYTSTIRQSKHQSTLQAQTTNKDEFAAFHNSSLAYYPVALK
ALNFAANFSSQRVRIPAIINGEQVPDVTVDSAADIPCVSEQFIRTHK
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mRNA from alignment at H-paniculata_contig47443:535..1410+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47443.11789.1 ID=mRNA_H-paniculata_contig47443.11789.1|Name=mRNA_H-paniculata_contig47443.11789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=876bp|location=Sequence derived from alignment at H-paniculata_contig47443:535..1410+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATGGCAGCGGAAATTTCAACGCTGCAAAAGCAGATGATTGATTTGGC
CACTGCAGTCAACTCCCGCCAAGTCTCTGCAGTAGCGAGCGATGGCTCCA
CCCGCAAGTCACGGGGACGCTCGCGGTCGACCTCCCGCAACTCCACCAAC
TCGTCGGGAGCCCGCGCCAGCAGTGCCACCACCCCGACTGGACGCCAGCA
ACAGGTCACCTTCGCCCAGGCCGTCACCCAATCGGCACCAGCACAGCAGG
CGCAGGAGACTTGTCAGTGGCAGGGTTGTAAGCGACCCCATACTCACCCG
ACCAAGAAGTGCCGCTTGTTCATTAACTTTGTCAATAAATACAAGCCTTG
ACGGGACCCTGGACGACTTTCCTCCGGTCGCCTAGGGGAGATTAGCGTAG
GCAGTACTGTATTTCAAGGTCAAGATCAGTCACAAATGATTGTAAGTAAC
CCCACTAACGTAGCATTACCTGTAGGAAGGGCGCCCAACTTTGCGGGTGC
TAGTACTGCAGCGAAGCGTCCACAGTGTGGGTTTGTAGACCAGGTATTGC
CTAGCCATAGGAGTGCGAAGCGTTGCCGAGTAGCAGCGACACATACCCTC
GCACCTCAGTGTCTGTATACGAGTACTATAAGACAAAGTAAGCACCAGTC
TACTTTGCAGGCGCAGACAACTAATAAAGACGAATTTGCCGCTTTTCACA
ACAGCTCTCTCGCGTACTATCCTGTCGCATTGAAAGCTCTAAATTTTGCC
GCTAATTTTTCTTCGCAGAGAGTGCGAATCCCAGCCATCATCAATGGTGA
GCAGGTGCCCGACGTCACGGTCGACAGCGCTGCTGATATCCCGTGCGTGT
CTGAGCAGTTCATCCGCACACACAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig47443:535..1410+

>mRNA_H-paniculata_contig47443.11789.1 ID=mRNA_H-paniculata_contig47443.11789.1|Name=mRNA_H-paniculata_contig47443.11789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig47443:535..1410+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTGTAAGTAACCCCACTAACGTAGCATTACCTGTAGGAAGGGCGCC
CAACTTTGCGGGTGCTAGTACTGCAGCGAAGCGTCCACAGTGTGGGTTTG
TAGACCAGGTATTGCCTAGCCATAGGAGTGCGAAGCGTTGCCGAGTAGCA
GCGACACATACCCTCGCACCTCAGTGTCTGTATACGAGTACTATAAGACA
AAGTAAGCACCAGTCTACTTTGCAGGCGCAGACAACTAATAAAGACGAAT
TTGCCGCTTTTCACAACAGCTCTCTCGCGTACTATCCTGTCGCATTGAAA
GCTCTAAATTTTGCCGCTAATTTTTCTTCGCAGAGAGTGCGAATCCCAGC
CATCATCAATGGTGAGCAGGTGCCCGACGTCACGGTCGACAGCGCTGCTG
ATATCCCGTGCGTGTCTGAGCAGTTCATCCGCACACACAAGATGATTGTA
AGTAACCCCACTAACGTAGCATTACCTGTAGGAAGGGCGCCCAACTTTGC
GGGTGCTAGTACTGCAGCGAAGCGTCCACAGTGTGGGTTTGTAGACCAGG
TATTGCCTAGCCATAGGAGTGCGAAGCGTTGCCGAGTAGCAGCGACACAT
ACCCTCGCACCTCAGTGTCTGTATACGAGTACTATAAGACAAAGTAAGCA
CCAGTCTACTTTGCAGGCGCAGACAACTAATAAAGACGAATTTGCCGCTT
TTCACAACAGCTCTCTCGCGTACTATCCTGTCGCATTGAAAGCTCTAAAT
TTTGCCGCTAATTTTTCTTCGCAGAGAGTGCGAATCCCAGCCATCATCAA
TGGTGAGCAGGTGCCCGACGTCACGGTCGACAGCGCTGCTGATATCCCGT
GCGTGTCTGAGCAGTTCATCCGCACACACAAG
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