mRNA_H-paniculata_contig4741.11780.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4741.11780.1
Unique NamemRNA_H-paniculata_contig4741.11780.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4741.11780.1 vs. uniprot
Match: A0A6H5L5I7_9PHAE (Lipid_desat domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5I7_9PHAE)

HSP 1 Score: 446 bits (1148), Expect = 5.900e-149
Identity = 238/386 (61.66%), Postives = 271/386 (70.21%), Query Frame = 2 
Query:  200 MPPEESQVFSSDGGIFLNSLPSI--GNLPDER----VADNGRLSDAEADVLVDNKGRPYKLGPKGFVCDLNTRAVKIARRVQARALAASEREPNGHVSVAGEKEGYVPAELPAPVWASLGGKDNDSSHTLSTTEESG-GESGTVRSAIAQEIQFVLGGRLPFVKRSELLVWSWVLLSAFFLVRYGLLEAGLACTVAAFCVMYVVLDFYSGVLHVVLDDEWNMGVPLLSQPAMEFQYHHHIPDDGCSRPFIEGMGDLNFIIGLHLALFTALFIHGGQKDSLLLCAGGWKMLIAYWGIWNHRQAHQMKSKRPFWVTYLQNKNLMLSPAAHKVHHTPPHEDEYCLLGVSTPAVTWLKRRNIGSISWILLFLLLTALDTVGPARLLDIIF 1336
            MPP+ +   SS G +   + P     +L D++    +   G     E  VL+DNKGRPY LGP+GFV DLNTRAVKIARRV      A + +                         S             T   +    SGTVRS IAQEIQFVLGGRLPFVKR E LVW +V LS FFL+RYG+ E G+A TV AF VMY VLDFYSGVLHVVLDD+WNM VPLLSQPAMEFQYHHHIPDDGCSRPF+EGMGDLNFI+GLHLALFTALF+ GG +D +LL AGGWKM++AYWGIWNHRQAHQ+KSKRP W TYLQN  +MLSPAAHKVHHTPPH+DEYCLLGV+T  VTWL RRN+GSI WI LFL LTALDTV  +RLL ++F
Sbjct:    1 MPPQAT--ISSSGAMIPPADPDHRPASLADKKHYQELQQQGXXXXEE--VLIDNKGRPYNLGPRGFVRDLNTRAVKIARRV------AQQSQXXXXXXXXXXXXXXXXXXXXXXXXXSTNXXXXXXXXXXXTAVAADKSTSGTVRSPIAQEIQFVLGGRLPFVKRIETLVWGYVCLSMFFLIRYGIFECGVAPTVGAFAVMYFVLDFYSGVLHVVLDDDWNMKVPLLSQPAMEFQYHHHIPDDGCSRPFVEGMGDLNFIVGLHLALFTALFVRGGSQDFMLLTAGGWKMVLAYWGIWNHRQAHQLKSKRPRWCTYLQNNGIMLSPAAHKVHHTPPHDDEYCLLGVTTWPVTWLGRRNLGSIFWIALFLGLTALDTVCASRLLSMVF 376
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BLAST of mRNA_H-paniculata_contig4741.11780.1 vs. uniprot
Match: D7FL42_ECTSI (Lipid_desat domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL42_ECTSI)

HSP 1 Score: 409 bits (1051), Expect = 5.870e-136
Identity = 194/246 (78.86%), Postives = 217/246 (88.21%), Query Frame = 2 
Query:  599 SGTVRSAIAQEIQFVLGGRLPFVKRSELLVWSWVLLSAFFLVRYGLLEAGLACTVAAFCVMYVVLDFYSGVLHVVLDDEWNMGVPLLSQPAMEFQYHHHIPDDGCSRPFIEGMGDLNFIIGLHLALFTALFIHGGQKDSLLLCAGGWKMLIAYWGIWNHRQAHQMKSKRPFWVTYLQNKNLMLSPAAHKVHHTPPHEDEYCLLGVSTPAVTWLKRRNIGSISWILLFLLLTALDTVGPARLLDIIF 1336
            SGTVRS+IAQEIQFVLGGRLPFVKR E LV  +V +S FFL+RYG+LE G+A TV AF VMY VLDFYSGVLHVVLDD+WNM VPLLSQPAMEFQYHHHIPDDGCSRPF+EGMGDLNFI+GLHLALFTALF+ GG +D +LL AGGWKM++AYWGIWNHRQAHQ+KSKRP W TYLQN  +MLSPAAHKVHHTPPH+DEYCLLGV+T  VTWL RRN+GSI WI LFL LTALDT+  +RLL ++F
Sbjct:   26 SGTVRSSIAQEIQFVLGGRLPFVKRIETLVRGYVCVSMFFLIRYGILECGVAPTVGAFAVMYFVLDFYSGVLHVVLDDDWNMNVPLLSQPAMEFQYHHHIPDDGCSRPFVEGMGDLNFIVGLHLALFTALFVRGGSQDFMLLTAGGWKMVLAYWGIWNHRQAHQLKSKRPRWCTYLQNNGIMLSPAAHKVHHTPPHDDEYCLLGVTTWPVTWLGRRNLGSIFWIALFLGLTALDTICASRLLSMVF 271
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BLAST of mRNA_H-paniculata_contig4741.11780.1 vs. uniprot
Match: A0A6U5EGY9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5EGY9_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.390e-34
Identity = 78/223 (34.98%), Postives = 125/223 (56.05%), Query Frame = 2 
Query:  641 VLGGRLPFVKRSELLVWSWVLLSAFFLVRYGLLEAGLACTVAAFCVMYVVLDFYSGVLHVVLDDEWNMGVPLLSQPAMEFQYHHHIPDDGCSRPFIEGMGDLNFIIGLHLALFTALFIHGGQKDSL---LLCAGGWKMLIAYWGIWNHRQAHQMKSKRPFWVTYLQNKNLMLSPAAHKVHHTPPHEDEYCLLGVSTPAVTWLKRRNIGSISWILLFLLLTALD 1300
            ++ G   +  RS   V+S++L++   +V YG+ +  L  T  +   +++  D YSGVLHVV D   N+ +P+L QP +EFQ+HH IPDD   + F++  GDLN  + L L       + G  ++ +    L   G K+ + Y+G ++HR AH      P    +LQ + LM+SP AH  HH PPH+ ++CL+GV  P V  ++R  +   +W+ +FL  + LD
Sbjct:  102 MVAGTPVYQLRSAYAVFSYLLITLAMIV-YGMSQISLFATSLSLLTIFLGYDLYSGVLHVVFDHPDNIRLPVLGQPCLEFQWHHKIPDDLVRKDFVDVCGDLN-TVALILFFVYGYLLFGPHREGVSGAALVLAGSKLWMGYFGQFSHRSAHSYGKHCPRLAAWLQKRGLMISPRAHLSHHKPPHDTDFCLIGVCNPIVAAMRRVTLNRHAWLAVFLTWSVLD 322
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BLAST of mRNA_H-paniculata_contig4741.11780.1 vs. uniprot
Match: A0A7S3LC45_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LC45_9STRA)

HSP 1 Score: 143 bits (361), Expect = 3.880e-34
Identity = 79/236 (33.47%), Postives = 133/236 (56.36%), Query Frame = 2 
Query:  626 QEIQFVLGGRLPFVKRSELLVWSWVLLSAFFLVRYGLLEAGLACTVAAFCV--MYVVLDFYSGVLHVVLDDEWNMGVPLLSQPAMEFQYHHHIPDDGCSRPFIEGMGDLNFIIGLHLALFTALFIHGGQKDSLLLCAGGWKMLIAYWGIWNHRQAHQMKSKRPFWVTYLQNKNLMLSPAAHKVHHTPPHEDEYCLLGVSTPAVTWLKRRNIGSISWILLFLLLTALDTVGPARLLD 1327
            Q++  +  G   +  RS +LV+++ + +A  +++   +   L     A CV  M++  DFYSGVLHVVLD   N+ +P+L QP +EFQ+HH IPDD   + F++  GDLN ++ +  A+   L         + +  GG K+ +AY+G ++H+ AH     R  + T+LQ    M+S   H  HH PP++ ++CL+G   PA+  L+     + +W+ LF + + LD VG  +L++
Sbjct:  103 QKMTTLTAGSPVYQLRSSVLVYAYAIGTALLILKGATMLHPLT---TALCVLTMFLGYDFYSGVLHVVLDHPDNIALPILGQPCLEFQWHHAIPDDLVRKDFVDVCGDLNVVVMILAAINLYLL---DLNSGVAMVIGGLKLWMAYFGQFSHKSAHAFGPARGGFATWLQKYGFMISCKDHMSHHKPPYDVDFCLIGFCNPAIDALRSLTTNNAAWLSLFFVWSILDLVGYVKLVE 332
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BLAST of mRNA_H-paniculata_contig4741.11780.1 vs. uniprot
Match: A0A8J2S8L3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S8L3_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.670e-31
Identity = 82/187 (43.85%), Postives = 102/187 (54.55%), Query Frame = 2 
Query:  743 AGLACTVA----AFC----VMYVVLDFYSGVLHVVLDDEWNM-GVP--LLSQPAMEFQYHHHIPDDGCSRPFIEGMGDLNFIIGLHLALFTALFIHGGQKDSLLLCAGGWKMLIAYWGIWNHRQAHQMKSKRPFWVTYLQNKNLMLSPAAHKVHHTPPHEDEYCLLGVSTPAVTWLKRRNIGSISWI 1270
            AG  CT A    AF      MY+  DFYSGVLHV LDD  NM GV   +L Q  +EFQ+HH IP DG S+PFI    DLN I+ + + L   L    G          G K+  AY+G + HR AH  KSKRP WV +LQ+   M   A H  HH PPH++ +CL+G   PAV  L +   G+  W+
Sbjct:   95 AGYLCTTAPSLRAFLWMLPAMYLGYDFYSGVLHVALDDPKNMQGVKSYILFQGCLEFQWHHAIPYDGASKPFIACCADLNIIVLILMVLNCGLL---GYTSGTRAALTGLKLFFAYFGQYCHRAAHTPKSKRPQWVQFLQSTGFMTPQAKHNGHHRPPHDENFCLIGKMDPAVNGLIKL-CGTNDWV 277
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BLAST of mRNA_H-paniculata_contig4741.11780.1 vs. uniprot
Match: A0A7S3PX68_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PX68_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.080e-22
Identity = 60/193 (31.09%), Postives = 98/193 (50.78%), Query Frame = 2 
Query:  662 FVKRSELLVWSWVLLSAFFLVRYGLLEAGLACTVAAFCVMYVVLDFYSGVLHVVLDDEWNMGVPLLSQPAMEFQYHHHIPDDGCSRPFIEGMGDLNFIIGLHLAL-FTALFIHGGQKDSLLLCAGGWKMLIAYWGIWNHRQAHQMKSKRPFWVTYLQNKNLMLSPAAHKVHHTPPHEDEYCLLGVSTPAVTWL 1237
            +V R+  LV  + + SA  L  + + +  L   +       V  D  SG LH+V DD  N+ +P+L QP +EFQ HHH P D   R  ++ +GDLN + G+   L     F      ++      G K+ +AY+G ++HR AH   S    ++  L+    M+    H+ HH PPH+ ++CL+G+  P + ++
Sbjct:   58 YVPRTHSLVIVYSIFSALIL-AWAIHDTSLLHFILCIIGSLVGYDILSGFLHIVFDDTRNLCLPVLGQPCLEFQMHHHFPYDLVKRDLLDVLGDLNTVTGILAVLNICPYFFCDPWNNTTHRFMLGMKLFMAYYGQFSHRSAHTPSSVHNKYIEALRKIGFMIPLDVHRSHHRPPHDKDFCLVGICNPLINFM 249
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BLAST of mRNA_H-paniculata_contig4741.11780.1 vs. uniprot
Match: A0A7Y2FPK9_9DELT (Lipid_desat domain-containing protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y2FPK9_9DELT)

HSP 1 Score: 107 bits (266), Expect = 4.550e-22
Identity = 70/194 (36.08%), Postives = 98/194 (50.52%), Query Frame = 2 
Query:  764 AAFCVMYVVLDFYSGVLHVVLDDEWNMGVPLLSQPAMEFQYHHHIPDDGCSRPFIEGMGDLNFIIGLHLALFTALFIHG--GQKDSLLLCAGGWKMLIAY-WGIWN---HRQAHQMKSKRPFWVTYLQNKNLMLSPAAHKVHHTPPHEDEYCLLGVSTPAVTWLKRRNIGSISWILLFLLLTALDTVGPARLLD 1327
            A F V Y  +DFYSGVLHVVLD+   + +PL+  P +EFQ+HH  P D  +R   +  GDLN ++     L  + F+ G  G   +  + AG     + Y WG  N   HR AH     RP    ++Q   L++ PA H VHH    +    L G S   +  + R       W++LF++LTALD V    L+D
Sbjct:   87 ATFVVFYFYIDFYSGVLHVVLDNPRFVRLPLIGVPCVEFQWHHTFPYDISTRRLFDVWGDLNVLL-----LVKSAFLFGICGFSTTTFMVAG-----VGYAWGYANQFSHRLAHTAPRNRPKLAVWMQEHRLLMPPAVHHVHHNDHTQAFPVLSGHSRGLIQGMLRVIPNGYFWLVLFVVLTALDLVAICWLVD 270
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BLAST of mRNA_H-paniculata_contig4741.11780.1 vs. uniprot
Match: A0A5F1XTR2_9LEPT (Kua-ubiquitin conjugating enzyme hybrid localization domain protein n=4 Tax=Leptospira TaxID=171 RepID=A0A5F1XTR2_9LEPT)

HSP 1 Score: 70.1 bits (170), Expect = 9.940e-10
Identity = 58/167 (34.73%), Postives = 85/167 (50.90%), Query Frame = 2 
Query:  794 DFYSGVLHVVLDDEWNMGVPLLSQPAMEFQYH-HHIPDDGCSR-PFIEGMGDLNFIIGLHLALFTALFIHGGQKDSLLLCAGGWKMLIAYWGIWN----HRQAHQMKSKRPFWVTYLQNKNLMLSPAAHKVHHTPPHEDEYCLL-GVSTPAVTWLKRRNIGSISWIL 1273
            DF SG++H + D   +   P+   PA  F +  HH+   G +R  FIE  G+ N ++ L + ++   F       S L+ A  W  L+  WGI+     H+ AHQ  S   F +  LQ   L+L PA HKVHHTPPH+  +C+  G   P +  LK  +  ++ WIL
Sbjct:   68 DFISGLVHFLGDSVGSETTPIFG-PAFIFPFRDHHVDPKGITRHDFIETNGN-NCLVSLPILVYYVFFWESEGVVSSLI-ALFWFFLL--WGIFATNQIHKWAHQ-DSPNAF-IKTLQKYKLILGPAHHKVHHTPPHDTYFCITTGWLNPVLKTLKFYD--ALRWIL 225
[Close]
BLAST of mRNA_H-paniculata_contig4741.11780.1 vs. uniprot
Match: H8MNW2_CORCM (Carotenoid synthesis regulator CarF n=33 Tax=Myxococcaceae TaxID=31 RepID=H8MNW2_CORCM)

HSP 1 Score: 58.2 bits (139), Expect = 1.690e-5
Identity = 42/162 (25.93%), Postives = 72/162 (44.44%), Query Frame = 2 
Query:  782 YVVLDFYSGVLHVVLDDEWNMGVPLLSQPAMEFQYHHHIPDDGCSR-PFIEGMGDLNFIIGLHLALFTALFIHGGQKDSLLLCAGGWKMLIAYWG-----IWNHRQAHQMK--SKRPFWVTYLQNKNLMLSPAAHKVHHTPPHEDEYCLLGVSTPAVTWLKR 1243
            Y+  DF SG +H + D   +  +P+L +  +     HH+ +   +R  F+E  G+ N ++ L +A             ++ L   GW  L A+ G     +    Q H+     + P  + +LQ  +L+L P  H++HHT P    YC+       V W+ R
Sbjct:   68 YLAADFVSGFVHWMGDTWGSTEMPILGKAFIRPFREHHVDEKAITRHDFVETNGN-NCLVSLPVAALAV---------AIPLAGPGWVFLAAFLGAMIFWVMATNQFHKWSHLDEPPAIINFLQRVHLILPPDHHRIHHTAPFNQYYCI------TVGWMNR 213
[Close]
BLAST of mRNA_H-paniculata_contig4741.11780.1 vs. uniprot
Match: UPI00186BBDAB (fatty acid desaturase family protein n=1 Tax=Corallococcus sp. ZKHCc1 1396 TaxID=2710757 RepID=UPI00186BBDAB)

HSP 1 Score: 56.2 bits (134), Expect = 7.230e-5
Identity = 43/159 (27.04%), Postives = 72/159 (45.28%), Query Frame = 2 
Query:  782 YVVLDFYSGVLHVVLDDEWNMGVPLLSQPAMEFQYHHHIPDDGCSR-PFIEGMGDLNFIIGLHLA-LFTALFIHGGQKDSLLLCAGG---WKMLIAYWGIWNHRQAHQMKSKRPFWVTYLQNKNLMLSPAAHKVHHTPPHEDEYCLLGVSTPAVTWLKR 1243
            Y+  DF SG +H + D   +  +P+L +  +     HH+ +   +R  F+E  G+ N ++ L +A L  A+ ++G     L    G    W M    +  W+H          P  + +LQ  +L+L P  H++HHT P    YC+       V W+ R
Sbjct:   68 YLAADFVSGFVHWMGDTWGSTQMPVLGKAFIRPFREHHVDEKAITRHDFVETNGN-NCLVSLPVAALAVAVPLNGPGWVFLAAFLGAMIFWVMATNQFHKWSHLDTP------PALIHFLQRVHLILPPDHHRIHHTAPFNQYYCI------TVGWMNR 213
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4741.11780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5L5I7_9PHAE5.900e-14961.66Lipid_desat domain-containing protein n=1 Tax=Ecto... [more]
D7FL42_ECTSI5.870e-13678.86Lipid_desat domain-containing protein n=1 Tax=Ecto... [more]
A0A6U5EGY9_9STRA1.390e-3434.98Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S3LC45_9STRA3.880e-3433.47Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A8J2S8L3_9STRA1.670e-3143.85Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3PX68_9STRA1.080e-2231.09Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7Y2FPK9_9DELT4.550e-2236.08Lipid_desat domain-containing protein n=1 Tax=Myxo... [more]
A0A5F1XTR2_9LEPT9.940e-1034.73Kua-ubiquitin conjugating enzyme hybrid localizati... [more]
H8MNW2_CORCM1.690e-525.93Carotenoid synthesis regulator CarF n=33 Tax=Myxoc... [more]
UPI00186BBDAB7.230e-527.04fatty acid desaturase family protein n=1 Tax=Coral... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4741contigH-paniculata_contig4741:402..6843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score410.6
Seed ortholog evalue8e-112
Seed eggNOG ortholog2880.D7FL42
Preferred nameTMEM189
KEGG koko:K10704,ko:K20656
KEGG Pathwayko04624,map04624
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016491,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0031224,GO:0031371,GO:0031625,GO:0032446,GO:0032991,GO:0035370,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0055114,GO:0061630,GO:0061659,GO:0070534,GO:0070647,GO:0071704,GO:0080132,GO:0140096,GO:1901564,GO:1902494,GO:1990234
EggNOG free text desc.protein ubiquitination
EggNOG OGsKOG3011@1,KOG3011@2759
Ec32 ortholog descriptionB-domain containing protein Kua
Ec32 orthologEc-05_006720.1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400,ko04131
Exons4
Model size2065
Cds size1143
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4741.11780.1prot_H-paniculata_contig4741.11780.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4741 1125..6644 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930408.9962642-UTR-H-paniculata_contig4741:401..11241622930408.9962642-UTR-H-paniculata_contig4741:401..1124Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4741 402..1124 -
1691481278.6386802-UTR-H-paniculata_contig4741:401..11241691481278.6386802-UTR-H-paniculata_contig4741:401..1124Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4741 402..1124 -
1622930409.1037068-UTR-H-paniculata_contig4741:6644..68431622930409.1037068-UTR-H-paniculata_contig4741:6644..6843Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4741 6645..6843 -
1691481278.6826544-UTR-H-paniculata_contig4741:6644..68431691481278.6826544-UTR-H-paniculata_contig4741:6644..6843Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4741 6645..6843 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930409.015042-CDS-H-paniculata_contig4741:1124..13851622930409.015042-CDS-H-paniculata_contig4741:1124..1385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4741 1125..1385 -
1691481278.6496053-CDS-H-paniculata_contig4741:1124..13851691481278.6496053-CDS-H-paniculata_contig4741:1124..1385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4741 1125..1385 -
1622930409.0334296-CDS-H-paniculata_contig4741:2629..27781622930409.0334296-CDS-H-paniculata_contig4741:2629..2778Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4741 2630..2778 -
1691481278.6578364-CDS-H-paniculata_contig4741:2629..27781691481278.6578364-CDS-H-paniculata_contig4741:2629..2778Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4741 2630..2778 -
1622930409.053786-CDS-H-paniculata_contig4741:5404..58431622930409.053786-CDS-H-paniculata_contig4741:5404..5843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4741 5405..5843 -
1691481278.6660616-CDS-H-paniculata_contig4741:5404..58431691481278.6660616-CDS-H-paniculata_contig4741:5404..5843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4741 5405..5843 -
1622930409.0890806-CDS-H-paniculata_contig4741:6350..66441622930409.0890806-CDS-H-paniculata_contig4741:6350..6644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4741 6351..6644 -
1691481278.67429-CDS-H-paniculata_contig4741:6350..66441691481278.67429-CDS-H-paniculata_contig4741:6350..6644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4741 6351..6644 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4741.11780.1

>prot_H-paniculata_contig4741.11780.1 ID=prot_H-paniculata_contig4741.11780.1|Name=mRNA_H-paniculata_contig4741.11780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=381bp
MPPEESQVFSSDGGIFLNSLPSIGNLPDERVADNGRLSDAEADVLVDNKG
RPYKLGPKGFVCDLNTRAVKIARRVQARALAASEREPNGHVSVAGEKEGY
VPAELPAPVWASLGGKDNDSSHTLSTTEESGGESGTVRSAIAQEIQFVLG
GRLPFVKRSELLVWSWVLLSAFFLVRYGLLEAGLACTVAAFCVMYVVLDF
YSGVLHVVLDDEWNMGVPLLSQPAMEFQYHHHIPDDGCSRPFIEGMGDLN
FIIGLHLALFTALFIHGGQKDSLLLCAGGWKMLIAYWGIWNHRQAHQMKS
KRPFWVTYLQNKNLMLSPAAHKVHHTPPHEDEYCLLGVSTPAVTWLKRRN
IGSISWILLFLLLTALDTVGPARLLDIIFV*
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mRNA from alignment at H-paniculata_contig4741:402..6843-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4741.11780.1 ID=mRNA_H-paniculata_contig4741.11780.1|Name=mRNA_H-paniculata_contig4741.11780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6442bp|location=Sequence derived from alignment at H-paniculata_contig4741:402..6843- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGACAACGAGTCCGAACAGTTGCATGAAGAGGTCAGCAGTTCTCGTGATC
TTTGAACACAACAGTCCAGCTCAGAAGCAGAAGTCAGTTGGAGAATTTAC
GAGGAGCAATCGAGGTGCCAGCGAAAGTCTGTTTTTGTTCGCGGTGGCTC
ATCCATCGTACGTTTTCCAGCTCGCGGCACGCGACGTCAGAACGGAAAGA
TGCCGCCTGAGGAGAGTCAGGTTTTTAGTAGCGATGGCGGAATCTTTCTA
AACTCTCTCCCCAGTATTGGTAATCTCCCTGACGAAAGAGTTGCAGACAA
CGGACGGCTAAGCGATGCTGAGGCCGATGTGCTCGTGGATAACAAGGGGA
GACCTTATAAGCTAGGCCCCAAGGGCTTTGTGTGTGATCTGAACACGCGG
GCGGTGAAGATCGCGCGTCGTGTGCAAGCGCGGGCGTTGGCAGCATCTGA
AAGAGAGCCCAACGGTCATGTCTCAGTAGCTGGTGAAAAAGAGGTGAGAA
TCGCGACGTGCCGCATAATTTTTCCCACGTGTGTTGCTCTGCAGATAATT
GTACAATATTTACTGTTTATATTGATCGTCTCAAGTTTGCAGAAGAAGCA
GCCGGAGTAATGGTAAGGGTTGGTCATGGTGACCGGACGCAGCAAAAGAG
CTGCGTGGAACGCCCTGTGCTTCTGTGACCGGGAGACTCACTGCAAGATT
GAACTCGGTTGACAACCAATTGCAGTACACTGTCTCCTTTCTGACAAACG
AAAAGCAGAGCCGTGGACAAAGAAGAGTTTTTCGATTGAGCATGTACTCC
AGAAACCAGAAAGGTCGAAAGGTGACAACTACTGAAAACCTATTTCAAGT
AGACATTGCCACAGTGCAGTCAGTCAGTACATAAAGTACAGTCAGTCATC
CAAGGCTTCGAACACAAATTCCACCGCATCGCCCCCCTGCTCATCCAATC
GACCATAGCGCTTGAGACAAACGCAGCGTCCCTCCCCAAATAAAAAATAG
GGTTACGTCCCCGCAGAATTACCTGCACCCGTCTGGGCATCACTTGGAGG
AAAGGACAACGATAGTAGTCACACACTTTCCACAACCGAGGAGTCCGGGG
GGGAAAGCGGGACGGTGCGCTCTGCAATTGCACAAGAAATCCAATTCGTG
CTCGGCGGGAGGCTTCCGTTCGTGAAGCGATCAGAGCTGCTTGTGTGGTC
ATGGGTCCTTCTATCTGCGTTCTTTCTAGTGAGGTATGGGTTGCTGGAGG
CCGGGTTGGCGTGCACTGTAGCGGCGTTCTGTGTCATGTACGTGGTGCTG
GATTTTTACTCTGGGGTGCTTCACGTGGTCCTCGACGATGAATGGAACAT
GGGGGTGCCGCTGCTCTCTCAGCCCGCAATGGAGTTCCAGTATCACCACC
ACATTCCTGATGATGGCTGCTCGAGACCTTTCATCGAAGGTGCGTTGGGT
GACTGGTGACCTACGTTTGAGCCACACCCTAGAGCCGCTTGAAGATGATA
TTGCGGGGTGGTGCCCTATTGAGCTCTTGTCTGCTGACTGTCTGTACTGT
TGTATGTCATAGTGTATCAGGATTCATTTTTATAATTAACTGTCAGTACT
TCGTTTCGGAGATACGAACAGACTAATCAAGCAGTCAGTTTGTATTTTTC
CCCGCTAATTCAAATTCCACCATGATAGAACTCGAAAGTTCTCTCATTGT
TCTACTGAAATTAAAAATATTTTCCATAAAGGTATCATGTGATAGAAAAT
GCAACGTAAACACACCCCGCACACACTGCACGTGACTCATCTCATCTCGT
CTATAGCACGAAGGTGATCGTCGATTTAAAATAGCTGCTCAATTATGTGC
TTGTGTACTTCCAAAAGAAGAATCCCATAAATCATCAATCATTGCCTTAG
CCCAACGAGTGTTCTGAAGAGCTAATAATCTTGCCTTGATTCTTAGATGG
CCCCCTTCGTTTTCACCCGTCGCCAGCCAATAGGGTCCATCCATCCAAAG
ACCAAACATCGAAGTTCCATTCCCGTCATCATCCAATGATTTAGCTTGGA
AAAGGAACCAGCGACCACCAATATTTACTCCTTCTTTCAATTCCTGTGCG
CTGTTTCAGAAGAACAAAAATAACAACTGACGATGAATGTCGAGGGCTGG
AGCCGATGTTGAGGACAAGACCATGCTAACTATGTGCCCTCAGTATATGT
GGTACATACTTTGTACTGACTTTATTGAGCTCTCGGTATGAAGGGTGGAG
GCTTTCCATCCCCGGAATCATGTCGCATGTGTCGTTTTGCTTTTTCCATC
TCTCGGAGATGGGGACTAGATGAGGATTAACGAGATGGCGCCCAAGAGGC
AAAACCGTTTCTCATGGCCAGAAAATCTTCCTTTTTGGAAAAGGGATTTT
TTTTGTGCCCAAATTATACTCTAGGCGAAACTTTGTCCCGCTGTATTGCA
GGTTCGCGTGCAGAACAAACAGTCCGTACACACCTTTGCCGCCAACAGCT
CGACTTACCACATATCGACCATCAGAGCGCAACGTTTGAGATAGTATACC
GATACATCAGCCTTGTGGGTCGTAACAGATGAGATTTTGGCGTAGCTTGT
GGCAGTCGGTCTGGCAACCGTACAGTCAGTTATCGCAGGTGACCCGTGGT
GGTGAGGGATATCGGGAGCTTGATAGAGTCATTGCCCATATGTCGCTGCC
GTCCACACCGAACATGTCCTCACTTGTCGGATGCTGTGCATGCACAAGCG
GACACGTCATCGTGGCAATCCGAATCCTGTCACTATGAAGCATACGCTAA
CTCCTCCAAAAATAGCTCTGCTCTGAAACCTCGGCGAGCTGCAAGTTCCA
CAGGCAAGGGCCTACACTGAGAAAAGCACAATAGTACATGTCACTCGAGC
CTCCGATGCGTTGATTACACCCAGAACGAAAAATGTAAGGGAATTTGACA
CATTTGGTCATCAATTTCGGGTTAGCACAATGAGACAGACAGACAATTGT
GACCATCTGCTTCCGTCCGAAGAGGTCTGATAAAAGGTAACCTTCCCATT
TTTCGTTTCCCACCCCCCCGTTGACAACTGTCAAGGAAAGAAAAGAAGAA
ATTCCACACAGTCCACAACTAATAAGTCGCCTGGAACGACTGATTAGGCT
GTGGTACCTTTTGACACCAAGATCTCGACCCCTACGAGGATGGTTGACCT
GAAGAAAGAATTCGCTGTACCATACGACATGATCTATGCATACACACGGT
CTCAAAGTAGAATAATAGATGGGACTGGAGAGAGGGGGAATCTCCTTTTC
AGCTAGAGTTCCAACTGTCATAATCAGTCGTTTCAAAGGGCTAATTAGTC
GTTGTGTATGTGAGAAATTCGTATGTGAAAAGTCTCTGCTTTGTTGCCGT
CTCCGGTTTTATTTGGCCATGATGGGAATGGAATTGGTCTCGATGTGAAA
TTAATAATGACAGTTTGAACGCGAAGTATCACTGAACACTGACTTTGAGA
GTAGGTGTTGCGTCCGGTCGTATCTTTTTGGGGTAGAAAACCGAGGACGC
GCTACCTGTGGGCGACGTATCGTCTTTGGATATTATTAAGTAGTATATTA
CCACATATGACAAGTCAAGAAATTTCTCATGTGATGAACGCTAATGCGCC
CCGTATCAAGTAGTCAACTTGTTTTTCTTACCACGTGTCACAGATAATCC
AGGGAGAGCACCGGTGCGGCTCAGGAAACGAAACGCAAACGACAGGTATA
ACGGGTATTGCCTGTATGGTGAATACGCACGGCTGGAGCTATGAATGACT
CCCTGAATAACAGTAAAATCGTCACGACATTTATCGCGAGATTCGTATTT
TCTCGGAAAATGTTATCCCCGGCCCTCCCAAAACATTGCTAACTCTTGAA
AGGCTTCGCGGTCGGTCCACAGAGAAACCCGTCTCCGTATCGTTTTTTCT
ACTTGATTTATGAAACGTATCTGTACGACCCCACGTTTTTCGTGATGATG
AACACGTTTTGTGTGTGCTGTGCCGAATGTGTTTTGGTTTTGGGGGGGAA
AACACGACCTCACAGGAATGGGTGATCTGAACTTCATAATCGGATTGCAT
CTGGCACTTTTCACGGCGCTGTTTATTCACGGAGGGCAAAAGGATTCGTT
GCTGCTCTGCGCCGGCGGTTGGAAAATGCTCATCGCGTATTGGGGAATTT
GGAACCACCGCCAAGTAAGTGCCTGTAATTAACGCCGTCGCTTTTCCGTG
CTTTGACCTACATGAAAAATGGAGAAAATAGGCACTATCCAGGGCTGTGT
CTGACGGTCTCGTTGGACTGCGGATGGCTTGAAACCCAAGGATCGTCGCA
ACAAGCCGCCGTCTTCATGGATCGTTCAAACGATTTCGACCGTTCAGTAT
CTGTCAGGTTTTTAATGTATCATTGTTACCCCTAAGACTCGTATCATCAG
AGAGCTGGTATCGCCAACTCCACTCTTTGATCAGATATTCCCTCGATGTG
TACGTGTATTTATCATGGCGTGTCGTGTAGTGTATTTTATGTATGCATTA
CGTACTGTACGAAATTGCGATAAAAAAGAAAGCGGCAAACACTGGTTCTT
TCCTATTTAGTATTCAAATCCGGTCCTACTCATCATGTCTCCCTGTAAGA
ATGAAGGAAAGTGTGTGTTAAAAGAAAAACGGGATTTCATTCAGTCCAAA
AGCTGGGGTAACAGGGGTCGGTAGGTCGAAATGCCTACTGGCCTGTAAGC
GCTGGAGCTTGACGTGCGGGTGGGGCATCACACCCAGTCAGGTGGTTCGT
TGTACGTTGCCGATGAGTACGTGTAGCTGTAAATGTGGGCCACATTACCT
CAGCATGAGATGTTTGCTCCTTTTCCATTTTGGCTGAATCGCAAGAAATA
GCCAACCATGGGAGATTGGGCTGCGTTTTCCTGGAAACATGTTCTCCTCT
CATCATGATGACGGGGGCTTCTGTGTCCTAATGAAGGGCATCGTGCATGA
ATTAATGGATTCCATGAAGGTGCTGTGTGCTATTCTGCTGCCGTACTTTG
AGAACACGATACAAACAGTTAGAGCACAATAGCTGAGGACATTACATCAC
CTCTCTCTCCCTGTTTTCTTCTGTCTGTCGGTTGTCTGATATTTTACACA
TTCGGACTGCCGACTGTGCTAAATTATGACACCAAGTGTGTACAGAAACA
ACACCTCCTTCCCATACATATATTCGGCATGGTTCGTCTACGGCCTGTTG
GGGACTGTGGCGCCCGAAGGATTGATATTTCGCACTTTCCCTCCCCTCCC
CCTTCAGTTGGATAAGCCACTCACGAGTATCGAAGCACTATTTATCGTCC
CTTTTTTCTTGTTGATGGATTATGTATTTCTTGTCGAACCATCCCCTTTA
ACCGTATTCGCTCCTTCGACTCCACAACCTACCCACTCTAAATATACACG
CATTACAGGCCCACCAAATGAAGAGCAAACGACCCTTCTGGGTAACATAC
CTCCAGAACAAAAACTTGATGCTCTCGCCAGCGGCGCATAAGGTGCACCA
CACCCCGCCGCACGAAGACGAGTACTGCCTGCTGGGGGTTTCCACGCCTG
CGGTAACGTGGCTGAAGCGGCGAAATATCGGTTCGATATCCTGGATCCTA
CTTTTCTTGTTGCTGACGGCGCTGGATACGGTGGGCCCCGCACGACTCCT
GGACATAATATTTGTGTAAAATTGTACAAAAATAAAAATGGAGGAAAAAA
AGAATGTGACTTCAGTGTCACCTATTTTTTGTTACTTTTGGTGAGCGACG
ATTTCGTTTTTGTCGTGGGTCTTGTTTTTTGTTATATGTGCGTTGTTTGT
TGATGTATTGGCGAAACGGAAATTAAGAAGTAGGTGAGATACAGAGATGG
CACCACTCACTCTCTGTGGGCAACTTGACGATTCCACGCGAATTGTATTT
TTGTCGCTTCTCTCTTGGGCCGGACGAGGCAACCGTCGAGAGTAAAAATG
ACGTGGACACTAGGTGGTGAGACGCGGCCTCTTCACCCTTCAGAAGCCTG
TAATCCTCTCATCATCTGGCATATTTAATATGCGGTTGTTGAAGAACAAC
TGCGGTATTTGCTTCTTGTTCGCTCGATGCTAAGCTGAACCCGAGGGGAT
GAGACGTCGAACTGCAAGAAAATGGTCACCTTTGGGACCTAAGAAATGCT
AAACCAGCTGTCGAGCTGGTGAAGCACTCTGTGGGTGTATTCTTATTTTT
TTTACAACTTGTCGTTAGGACTCCCAATTTTTAGGTCGTATGAGATCCGG
TTCTTGAGGAGTCGATGGGTGGCGTGGTGATATGTGACTGTCCCTGGTGG
GCATGATCGGGGAACTGTGGGGTTCGTCGTTTTATGCGCAAGACGTGGGG
TGCAGCATCCAGAAACTGAAGACGGAATAAATTCAAGGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4741:402..6843-

>mRNA_H-paniculata_contig4741.11780.1 ID=mRNA_H-paniculata_contig4741.11780.1|Name=mRNA_H-paniculata_contig4741.11780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2286bp|location=Sequence derived from alignment at H-paniculata_contig4741:402..6843- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGCCTGAGGAGAGTCAGGTTTTTAGTAGCGATGGCGGAATCTTTCT
AAACTCTCTCCCCAGTATTGGTAATCTCCCTGACGAAAGAGTTGCAGACA
ACGGACGGCTAAGCGATGCTGAGGCCGATGTGCTCGTGGATAACAAGGGG
AGACCTTATAAGCTAGGCCCCAAGGGCTTTGTGTGTGATCTGAACACGCG
GGCGGTGAAGATCGCGCGTCGTGTGCAAGCGCGGGCGTTGGCAGCATCTG
AAAGAGAGCCCAACGGTCATGTCTCAGTAGCTGGTGAAAAAGAGATGCCG
CCTGAGGAGAGTCAGGTTTTTAGTAGCGATGGCGGAATCTTTCTAAACTC
TCTCCCCAGTATTGGTAATCTCCCTGACGAAAGAGTTGCAGACAACGGAC
GGCTAAGCGATGCTGAGGCCGATGTGCTCGTGGATAACAAGGGGAGACCT
TATAAGCTAGGCCCCAAGGGCTTTGTGTGTGATCTGAACACGCGGGCGGT
GAAGATCGCGCGTCGTGTGCAAGCGCGGGCGTTGGCAGCATCTGAAAGAG
AGCCCAACGGTCATGTCTCAGTAGCTGGTGAAAAAGAGGGTTACGTCCCC
GCAGAATTACCTGCACCCGTCTGGGCATCACTTGGAGGAAAGGACAACGA
TAGTAGTCACACACTTTCCACAACCGAGGAGTCCGGGGGGGAAAGCGGGA
CGGTGCGCTCTGCAATTGCACAAGAAATCCAATTCGTGCTCGGCGGGAGG
CTTCCGTTCGTGAAGCGATCAGAGCTGCTTGTGTGGTCATGGGTCCTTCT
ATCTGCGTTCTTTCTAGTGAGGTATGGGTTGCTGGAGGCCGGGTTGGCGT
GCACTGTAGCGGCGTTCTGTGTCATGTACGTGGTGCTGGATTTTTACTCT
GGGGTGCTTCACGTGGTCCTCGACGATGAATGGAACATGGGGGTGCCGCT
GCTCTCTCAGCCCGCAATGGAGTTCCAGTATCACCACCACATTCCTGATG
ATGGCTGCTCGAGACCTTTCATCGAAGGGTTACGTCCCCGCAGAATTACC
TGCACCCGTCTGGGCATCACTTGGAGGAAAGGACAACGATAGTAGTCACA
CACTTTCCACAACCGAGGAGTCCGGGGGGGAAAGCGGGACGGTGCGCTCT
GCAATTGCACAAGAAATCCAATTCGTGCTCGGCGGGAGGCTTCCGTTCGT
GAAGCGATCAGAGCTGCTTGTGTGGTCATGGGTCCTTCTATCTGCGTTCT
TTCTAGTGAGGTATGGGTTGCTGGAGGCCGGGTTGGCGTGCACTGTAGCG
GCGTTCTGTGTCATGTACGTGGTGCTGGATTTTTACTCTGGGGTGCTTCA
CGTGGTCCTCGACGATGAATGGAACATGGGGGTGCCGCTGCTCTCTCAGC
CCGCAATGGAGTTCCAGTATCACCACCACATTCCTGATGATGGCTGCTCG
AGACCTTTCATCGAAGGAATGGGTGATCTGAACTTCATAATCGGATTGCA
TCTGGCACTTTTCACGGCGCTGTTTATTCACGGAGGGCAAAAGGATTCGT
TGCTGCTCTGCGCCGGCGGTTGGAAAATGCTCATCGCGTATTGGGGAATT
TGGAACCACCGCCAAGAATGGGTGATCTGAACTTCATAATCGGATTGCAT
CTGGCACTTTTCACGGCGCTGTTTATTCACGGAGGGCAAAAGGATTCGTT
GCTGCTCTGCGCCGGCGGTTGGAAAATGCTCATCGCGTATTGGGGAATTT
GGAACCACCGCCAAGCCCACCAAATGAAGAGCAAACGACCCTTCTGGGTA
ACATACCTCCAGAACAAAAACTTGATGCTCTCGCCAGCGGCGCATAAGGT
GCACCACACCCCGCCGCACGAAGACGAGTACTGCCTGCTGGGGGTTTCCA
CGCCTGCGGTAACGTGGCTGAAGCGGCGAAATATCGGTTCGATATCCTGG
ATCCTACTTTTCTTGTTGCTGACGGCGCTGGATACGGTGGGCCCCGCACG
ACTCCTGGACATAATATTTGTGTAAGCCCACCAAATGAAGAGCAAACGAC
CCTTCTGGGTAACATACCTCCAGAACAAAAACTTGATGCTCTCGCCAGCG
GCGCATAAGGTGCACCACACCCCGCCGCACGAAGACGAGTACTGCCTGCT
GGGGGTTTCCACGCCTGCGGTAACGTGGCTGAAGCGGCGAAATATCGGTT
CGATATCCTGGATCCTACTTTTCTTGTTGCTGACGGCGCTGGATACGGTG
GGCCCCGCACGACTCCTGGACATAATATTTGTGTAA
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