mRNA_H-paniculata_contig47297.11755.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47297.11755.1
Unique NamemRNA_H-paniculata_contig47297.11755.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig47297.11755.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME)

HSP 1 Score: 63.5 bits (153), Expect = 7.480e-9
Identity = 44/148 (29.73%), Postives = 72/148 (48.65%), Query Frame = 1
Query:   10 KQLRCFICRSKDHLQRDCPNALKVDLGEDEYIASYI------ASTFTIGKQEVLSVDSEGLEYREVGEIEIWICDSGATKHMTHNSDFRFDYQQCNG-HVRLADGNRLPIEGVGMLFLRFRFDSTVVLMKLTQVAFIPLLSHHLLSLG 432
            K++ CF C    H  +DC    +    ED+ I S        ++T      EV+  +   LE ++V     WI DSGA++HMTH S++  + Q     HV L DG +  + G G ++++   D   +   L  V ++P L+ +L S+G
Sbjct:  225 KEIECFYCHKLGHYIKDCRKKRR---DEDQGIRSKEKQKNNESNTEAAFSAEVIEKEILNLEVKDV-----WILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVG 364          
BLAST of mRNA_H-paniculata_contig47297.11755.1 vs. uniprot
Match: A0A0J7N723_LASNI (Copia protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7N723_LASNI)

HSP 1 Score: 61.2 bits (147), Expect = 4.360e-8
Identity = 38/155 (24.52%), Postives = 66/155 (42.58%), Query Frame = 1
Query:   10 KQLRCFICRSKDHLQRDCPNALKVDLGEDE----------YIASYIASTFT-IGKQEVLSVDSEGLEYREVGEIEIWICDSGATKHMTHNSDF--RFDYQQCNGHVRLADGNRLPIEGVGMLFLRFRFDSTVVLMKLTQVAFIPLLSHHLLSLGK 435
            K + CF C  K H  R+C N        D+          ++      T     K+E  +VD  G +       ++WI DSGA+KH+T+  ++  +F+       V L D  +  + G G + +    D      ++  V ++P +  +L S+GK
Sbjct:  229 KDIECFKCGKKGHFARECKNNRSEKKTRDDSESRETRDCAFVVEASGKTSNKCSKEEESAVDKAGRQILSADLSDVWITDSGASKHITYRREWFNKFEVTNRGDSVSLGDNKKYDVVGEGTILIEKFVDGAWREAQIKNVIYVPEIKKNLFSVGK 383          
BLAST of mRNA_H-paniculata_contig47297.11755.1 vs. uniprot
Match: A0A0V1M1K0_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Trichinella TaxID=6333 RepID=A0A0V1M1K0_9BILA)

HSP 1 Score: 61.2 bits (147), Expect = 5.300e-8
Identity = 42/157 (26.75%), Postives = 74/157 (47.13%), Query Frame = 1
Query:    4 KSKQLRCFICRSKDHLQRDCPNALKVDLGEDEYIASYIASTFTIGKQEVLSVDSEGLEYREVGEIEIWICDSGATKHMTHNSDFRFDY----QQCNGHVRLADGNRLPIEGVGMLFLRFRFDSTVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYS 462
            K  + RCF C    HL ++C      + G+     S+   +F   + E    D+            +W+ DSGA++HMTHN ++  D+    Q  N  V++ +G+ +P  G G +  +       +L ++  V ++P L  +L S+GK AD G  ++
Sbjct:  228 KKDKRRCFKCHRIGHLAKNCTMKTVKNAGQSRQ--SFGGGSFFCYRAE----DNRNT-------CRMWLADSGASQHMTHNKEYLADFVTFPQPVN--VKIRNGDAIPAYGRGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKAADKGFYFT 369          
BLAST of mRNA_H-paniculata_contig47297.11755.1 vs. uniprot
Match: A0A7R8YZG1_HERIL (Hypothetical protein n=1 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8YZG1_HERIL)

HSP 1 Score: 57.4 bits (137), Expect = 9.540e-7
Identity = 38/159 (23.90%), Postives = 67/159 (42.14%), Query Frame = 1
Query:    4 KSKQLRCFICRSKDHLQRDC-------PNALKVDLGEDEYIASYIASTFTIGKQEVLSVDSEGLEYREVGEIEIWICDSGATKHMTHNSDFRFDYQQCNGH-VRLADGNRLPIEGVGMLFLRFRFDSTVVLMKLTQVAFIPLLSHHLLSLGKFADFGHE 456
            ++K + C  CR K HL RDC        NA +  L   E +   IA                      V   ++WI DSGA++H+T+  D+  +++  +G  + L D     + G G + +    +      ++  V ++P +  +L S+G   D G +
Sbjct:  203 RNKSVECVYCRRKGHLARDCRKKKRDTDNANENPLPNSEVVERLIA----------------------VDTSDVWITDSGASRHITYRRDWYSEFESSSGESISLGDNGVCEVTGSGTVLIDRLVNGKWCKARIENVLYVPKIRKNLFSVGVCTDKGFD 339          
BLAST of mRNA_H-paniculata_contig47297.11755.1 vs. uniprot
Match: A0A7R8UG25_HERIL (Hypothetical protein n=1 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8UG25_HERIL)

HSP 1 Score: 57.0 bits (136), Expect = 1.520e-6
Identity = 40/159 (25.16%), Postives = 78/159 (49.06%), Query Frame = 1
Query:    4 KSKQLRCFICRSKDHLQRDCPNALKV--DLGEDEYIASYIASTFTI----GKQEVLSVDSEGLE-YREVGEIEIWICDSGATKHMTHNSDFRFDYQQCNGHVRLADGNRL-PIEGVGMLFLRFRFDSTVVLMKLTQVAFIPLLSHHLLSLGKFADFGHE 456
            +++ + CF C+ K HL RDC    +   +  E+    +++AST       GK E +  +SE +E    V   ++WI DSGA++H+T+  D+  +++  +G      GN +  + G   + +    +      ++  V ++P +  +L S+G   D G +
Sbjct:  125 RNESVECFYCKRKGHLARDCRKKKRDTDNANENPRKCTFVASTREHKQLQGKSETVP-NSEVVERLMAVDTSDVWITDSGASRHITYRWDWYSEFESSSGESISLGGNGVCEVTGTCTVLIDRLVNGKWCKARIENVLYVPKIRKNLFSVGVCTDKGFD 282          
BLAST of mRNA_H-paniculata_contig47297.11755.1 vs. uniprot
Match: A0A8J6LF05_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LF05_TENMO)

HSP 1 Score: 55.8 bits (133), Expect = 3.910e-6
Identity = 35/156 (22.44%), Postives = 68/156 (43.59%), Query Frame = 1
Query:   10 KQLRCFICRSKDHLQRDCPNALKVD----LGEDEYIASYIASTFT-----IGKQEVLSVDSEGLEYREVGEIEIWICDSGATKHMTHNSDFRFDYQQCN--GHVRLADGNRLPIEGVGMLFLRFRFDSTVVLMKLTQVAFIPLLSHHLLSLGKFAD 444
            K + C+ C+ + H  R+C +    +     G+D    +++A           K     +DS   E R     ++WI DSGA++H+T   D+  +Y+     G + L D     I G G + +    +      ++  V ++P +  +L S+G + +
Sbjct:  227 KDVECYKCKKRGHFARECRSKKSENQNGSAGKDTRDCAFVAEKHRQQSKMCDKSNTKLLDSAINEVRNARNEDVWITDSGASRHITRRRDWFSEYRVLTNGGPISLGDNKECKIVGEGTVLIEKCVNDEWRNARIENVLYVPEMKKNLFSVGDYVN 382          
BLAST of mRNA_H-paniculata_contig47297.11755.1 vs. uniprot
Match: A0A8J6LGG0_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LGG0_TENMO)

HSP 1 Score: 55.1 bits (131), Expect = 6.800e-6
Identity = 37/160 (23.12%), Postives = 68/160 (42.50%), Query Frame = 1
Query:   10 KQLRCFICRSKDHLQRDCPNALKVD----LGEDEYIASYIASTFT-----IGKQEVLSVDSEGLEYREVGEIEIWICDSGATKHMTHNSDFRFDYQQCN--GHVRLADGNRLPIEGVGMLFLRFRFDSTVVLMKLTQVAFIPLLSHHLLSLGKFADFGHE 456
            K + C+ C+ + H  R+C +    +     G+D    +++A           K     +DS   E R     ++WI DSGA++H+T   D+  +Y+     G + L D     I G G + +    +      ++  V ++P +  +L S+G     G E
Sbjct:  227 KDVECYKCKKRGHFARECRSKKSENQNGRAGKDTRDCAFVAEKHRQQSKMCDKSNTKLLDSAINEVRNARNEDVWITDSGASRHITRRRDWFSEYRVLTNGGTISLGDNKECKIVGEGTVLIEKCVNDEWRNARIENVLYVPEMKKNLFSVGMCTTRGLE 386          
BLAST of mRNA_H-paniculata_contig47297.11755.1 vs. uniprot
Match: A0A0J7KAC3_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KAC3_LASNI)

HSP 1 Score: 55.1 bits (131), Expect = 6.920e-6
Identity = 38/162 (23.46%), Postives = 74/162 (45.68%), Query Frame = 1
Query:   10 KQLRCFICRSKDHLQRDCPNALKVDLGEDEYIA----SYIASTFTIGKQEVLSVDSE--------GLEYREVGEIEIWICDSGATKHMTHNSDFRFDYQQCNG-HVRLADGNRLPIEGVGMLFLRFRFDSTVVLMKLTQVAFIPLLSHHLLSLGKFADFGHE 456
            K   C  C+ K H  ++C    + +  E+E  +    +++A+       +V    S          L  +E+ ++  WI DSGA++H+TH  D+  DYQ  +G  + L D +     GVG + +    +      ++ +V ++P +  +L S+G     G++
Sbjct:   25 KDFECHYCKKKGHYAKNCRKKRRDEETEEEIGSGKNHAFVATCTDNSHIQVQKAASAYPTDEQMAALVNKEIRDV--WITDSGASRHITHRKDWLTDYQPISGVTIALGDDDVCQAIGVGTVHIEKLVNGKWCEGRIEEVLYVPKMKKNLFSVGVCTTKGYD 184          
BLAST of mRNA_H-paniculata_contig47297.11755.1 vs. uniprot
Match: A0A8J6HGM3_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HGM3_TENMO)

HSP 1 Score: 55.1 bits (131), Expect = 7.260e-6
Identity = 37/160 (23.12%), Postives = 68/160 (42.50%), Query Frame = 1
Query:   10 KQLRCFICRSKDHLQRDCPNALKVD----LGEDEYIASYIASTFT-----IGKQEVLSVDSEGLEYREVGEIEIWICDSGATKHMTHNSDFRFDYQQCN--GHVRLADGNRLPIEGVGMLFLRFRFDSTVVLMKLTQVAFIPLLSHHLLSLGKFADFGHE 456
            K + C+ C+ + H  R+C +    +     G+D    +++A           K     +DS   E R     ++WI DSGA++H+T   D+  +Y+     G + L D     I G G + +    +      ++  V ++P +  +L S+G     G E
Sbjct:  546 KDVECYKCKKRGHFARECRSKKNENQNGGAGKDTRDCAFVAEKHRQQSKMCDKSNTKLLDSAINEVRNARNEDVWITDSGASRHITRRRDWFSEYRVLTNGGTISLGDNKECKIVGEGTVLIEKCVNDEWRNARIENVLYVPEMKKNLFSVGMCTTRGLE 705          
BLAST of mRNA_H-paniculata_contig47297.11755.1 vs. uniprot
Match: A0A8J6LGF6_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LGF6_TENMO)

HSP 1 Score: 55.1 bits (131), Expect = 7.370e-6
Identity = 37/160 (23.12%), Postives = 68/160 (42.50%), Query Frame = 1
Query:   10 KQLRCFICRSKDHLQRDCPNALKVD----LGEDEYIASYIASTFT-----IGKQEVLSVDSEGLEYREVGEIEIWICDSGATKHMTHNSDFRFDYQQCN--GHVRLADGNRLPIEGVGMLFLRFRFDSTVVLMKLTQVAFIPLLSHHLLSLGKFADFGHE 456
            K + C+ C+ + H  R+C +    +     G+D    +++A           K     +DS   E R     ++WI DSGA++H+T   D+  +Y+     G + L D     I G G + +    +      ++  V ++P +  +L S+G     G E
Sbjct:  686 KDVECYKCKKRGHFARECRSKKNENQNGSAGKDTRDCAFVAEKHRQQSKMCDKSNTKLLDSAINEVRNARNEDVWITDSGASRHITRRRDWFSEYRVLTNGGTISLGDNKECKIVGEGTVLIEKCVNDEWRNARIENVLYVPEMKKNLFSVGMCTTRGLE 845          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47297.11755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A151ITN2_9HYME7.480e-929.73Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=... [more]
A0A0J7N723_LASNI4.360e-824.52Copia protein n=1 Tax=Lasius niger TaxID=67767 Rep... [more]
A0A0V1M1K0_9BILA5.300e-826.75Retrovirus-related Pol polyprotein from transposon... [more]
A0A7R8YZG1_HERIL9.540e-723.90Hypothetical protein n=1 Tax=Hermetia illucens Tax... [more]
A0A7R8UG25_HERIL1.520e-625.16Hypothetical protein n=1 Tax=Hermetia illucens Tax... [more]
A0A8J6LF05_TENMO3.910e-622.44Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A8J6LGG0_TENMO6.800e-623.13Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A0J7KAC3_LASNI6.920e-623.46Retrovirus-related pol polyprotein from transposon... [more]
A0A8J6HGM3_TENMO7.260e-623.13Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A8J6LGF6_TENMO7.370e-623.13Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47297contigH-paniculata_contig47297:667..1239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score77.0
Seed ortholog evalue8.4e-12
Seed eggNOG ortholog7425.NV17383-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons2
Model size462
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930406.038233-CDS-H-paniculata_contig47297:666..7351622930406.038233-CDS-H-paniculata_contig47297:666..735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47297 667..735 +
1691481277.3133447-CDS-H-paniculata_contig47297:666..7351691481277.3133447-CDS-H-paniculata_contig47297:666..735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47297 667..735 +
1622930406.0486617-CDS-H-paniculata_contig47297:846..12391622930406.0486617-CDS-H-paniculata_contig47297:846..1239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47297 847..1239 +
1691481277.3266473-CDS-H-paniculata_contig47297:846..12391691481277.3266473-CDS-H-paniculata_contig47297:846..1239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47297 847..1239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47297.11755.1prot_H-paniculata_contig47297.11755.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47297 667..1239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47297.11755.1

>prot_H-paniculata_contig47297.11755.1 ID=prot_H-paniculata_contig47297.11755.1|Name=mRNA_H-paniculata_contig47297.11755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
TKSKQLRCFICRSKDHLQRDCPNALKVDLGEDEYIASYIASTFTIGKQEV
LSVDSEGLEYREVGEIEIWICDSGATKHMTHNSDFRFDYQQCNGHVRLAD
GNRLPIEGVGMLFLRFRFDSTVVLMKLTQVAFIPLLSHHLLSLGKFADFG
HEYS
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mRNA from alignment at H-paniculata_contig47297:667..1239+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47297.11755.1 ID=mRNA_H-paniculata_contig47297.11755.1|Name=mRNA_H-paniculata_contig47297.11755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=573bp|location=Sequence derived from alignment at H-paniculata_contig47297:667..1239+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCAAGAGCAAGCAGCTAAGGTGCTTCATCTGCCGCTCCAAGGATCACCT TCAACGGGACTGCCCCAACGTGTACTGTCGGCGATGTGGTAAGCGTGGTC ACGACTTGGACGCGTGCCCCCAGCTCGCCGATGAAGATGCTTGTTTGGCT GAAGGTGAAATTGAGATTGAACTTGAAGAGGCGCTCAAGGTTGACCTGGG CGAAGACGAGTACATCGCGTCATACATCGCGTCGACTTTCACCATTGGCA AGCAAGAGGTTTTGTCTGTGGACTCTGAGGGGTTAGAATATCGTGAGGTG GGGGAGATTGAGATCTGGATTTGTGATAGTGGTGCAACAAAACACATGAC CCATAATTCAGATTTTCGTTTTGATTACCAGCAATGTAATGGGCATGTAC GCCTTGCAGATGGTAACCGTCTCCCGATCGAAGGAGTTGGCATGCTGTTC CTTCGATTTCGATTTGACTCCACGGTTGTTTTGATGAAGTTAACTCAGGT TGCGTTCATACCACTCCTCAGTCATCACCTTCTATCTCTAGGGAAATTCG CGGACTTTGGTCATGAATATAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig47297:667..1239+

>mRNA_H-paniculata_contig47297.11755.1 ID=mRNA_H-paniculata_contig47297.11755.1|Name=mRNA_H-paniculata_contig47297.11755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig47297:667..1239+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCAAGAGCAAGCAGCTAAGGTGCTTCATCTGCCGCTCCAAGGATCACCT
TCAACGGGACTGCCCCAACACCAAGAGCAAGCAGCTAAGGTGCTTCATCT
GCCGCTCCAAGGATCACCTTCAACGGGACTGCCCCAACGCGCTCAAGGTT
GACCTGGGCGAAGACGAGTACATCGCGTCATACATCGCGTCGACTTTCAC
CATTGGCAAGCAAGAGGTTTTGTCTGTGGACTCTGAGGGGTTAGAATATC
GTGAGGTGGGGGAGATTGAGATCTGGATTTGTGATAGTGGTGCAACAAAA
CACATGACCCATAATTCAGATTTTCGTTTTGATTACCAGCAATGTAATGG
GCATGTACGCCTTGCAGATGGTAACCGTCTCCCGATCGAAGGAGTTGGCA
TGCTGTTCCTTCGATTTCGATTTGACTCCACGGTTGTTTTGATGAAGTTA
ACTCAGGTTGCGTTCATACCACTCCTCAGTCATCACCTTCTATCTCTAGG
GAAATTCGCGGACTTTGGTCATGAATATAGTGCGCTCAAGGTTGACCTGG
GCGAAGACGAGTACATCGCGTCATACATCGCGTCGACTTTCACCATTGGC
AAGCAAGAGGTTTTGTCTGTGGACTCTGAGGGGTTAGAATATCGTGAGGT
GGGGGAGATTGAGATCTGGATTTGTGATAGTGGTGCAACAAAACACATGA
CCCATAATTCAGATTTTCGTTTTGATTACCAGCAATGTAATGGGCATGTA
CGCCTTGCAGATGGTAACCGTCTCCCGATCGAAGGAGTTGGCATGCTGTT
CCTTCGATTTCGATTTGACTCCACGGTTGTTTTGATGAAGTTAACTCAGG
TTGCGTTCATACCACTCCTCAGTCATCACCTTCTATCTCTAGGGAAATTC
GCGGACTTTGGTCATGAATATAGT
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