mRNA_H-paniculata_contig4723.11745.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4723.11745.1
Unique NamemRNA_H-paniculata_contig4723.11745.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4723.11745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4723contigH-paniculata_contig4723:13392..14519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_001350.1
Exons1
Model size1128
Cds size1128
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930404.6174479-CDS-H-paniculata_contig4723:13391..145191622930404.6174479-CDS-H-paniculata_contig4723:13391..14519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4723 13392..14519 -
1691481276.5503213-CDS-H-paniculata_contig4723:13391..145191691481276.5503213-CDS-H-paniculata_contig4723:13391..14519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4723 13392..14519 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4723.11745.1prot_H-paniculata_contig4723.11745.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4723 13392..14519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4723.11745.1

>prot_H-paniculata_contig4723.11745.1 ID=prot_H-paniculata_contig4723.11745.1|Name=mRNA_H-paniculata_contig4723.11745.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=376bp
MIWECAGSSKFAALHGELPGELTSLTFGRKFNLPVDAIGWPDALREIVFG
EAFSQPIDNVSWPSGLQRLRFGAFYNQPLHGVRWPLGLKGLSFGAKFDKP
LNAVKWPCALETIALGECFSWDLATTSFPPGLRILTLAGAFPGNIHKVPL
PEGLEEISLCHFDQPLDGFTLPLGLKRLKLGDLFNRPIERVIWPQGLKRL
TFGDCFNQPICGGSLPVGLETLEFGRDFNRSIRGAAVLPAGLWELSFGDR
FNQDAVGVNWPPGLKVLSFGEKFNREVGEVAWPATLQQLSFPGKFNQPVV
GVSWPPGLRHLGFGHSFNQALGEVKLPISLELLELGEAFRQPVDGVLWPV
GLKRLAVGPKVILQALQEARFPDGLK
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mRNA from alignment at H-paniculata_contig4723:13392..14519-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4723.11745.1 ID=mRNA_H-paniculata_contig4723.11745.1|Name=mRNA_H-paniculata_contig4723.11745.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1128bp|location=Sequence derived from alignment at H-paniculata_contig4723:13392..14519- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCTGGGAGTGCGCAGGATCTAGTAAATTTGCGGCCCTTCACGGCGA
GCTCCCAGGGGAGCTGACATCGTTGACCTTCGGGAGGAAGTTCAACTTGC
CTGTGGATGCCATTGGCTGGCCAGATGCTCTGAGAGAAATCGTTTTCGGG
GAGGCGTTTTCACAACCGATTGACAACGTGTCCTGGCCCTCTGGTCTCCA
GCGGCTCAGATTCGGAGCGTTTTACAATCAACCCTTGCACGGGGTGCGAT
GGCCGTTGGGATTGAAGGGGTTGTCGTTCGGGGCTAAATTCGACAAACCC
TTGAACGCGGTGAAGTGGCCATGCGCGCTCGAGACCATTGCTCTTGGAGA
GTGTTTTTCTTGGGATCTAGCGACGACTTCTTTTCCGCCTGGCTTGCGAA
TATTGACCCTGGCAGGGGCCTTCCCGGGCAACATCCACAAGGTTCCCCTT
CCAGAAGGGTTGGAGGAAATCTCACTGTGCCACTTCGACCAGCCTCTTGA
CGGCTTCACTCTGCCCTTGGGCCTGAAGCGACTGAAACTCGGCGACCTCT
TCAACCGGCCGATCGAGCGTGTGATTTGGCCACAGGGTCTAAAGCGACTC
ACCTTTGGCGATTGCTTTAACCAGCCGATATGTGGCGGATCCCTGCCCGT
CGGCCTAGAGACGCTCGAGTTCGGCCGGGATTTTAACCGGTCGATTCGAG
GTGCCGCGGTGTTGCCGGCAGGTTTGTGGGAGCTCTCGTTCGGTGACAGG
TTTAATCAGGATGCTGTCGGTGTGAATTGGCCGCCGGGTCTGAAAGTGCT
CTCCTTCGGGGAGAAGTTCAACCGCGAGGTCGGAGAAGTCGCCTGGCCTG
CAACCCTCCAACAGTTGTCGTTCCCGGGGAAATTTAACCAGCCGGTTGTT
GGTGTATCATGGCCACCGGGCTTACGACATCTTGGTTTTGGGCATTCCTT
CAATCAGGCCCTGGGCGAGGTCAAGTTGCCCATAAGTCTAGAATTACTCG
AGCTCGGCGAGGCCTTCAGACAGCCGGTTGATGGAGTTCTGTGGCCAGTG
GGTTTGAAACGTCTCGCTGTCGGGCCGAAAGTCATATTGCAGGCCCTCCA
GGAAGCCAGGTTTCCAGACGGGCTCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4723:13392..14519-

>mRNA_H-paniculata_contig4723.11745.1 ID=mRNA_H-paniculata_contig4723.11745.1|Name=mRNA_H-paniculata_contig4723.11745.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2256bp|location=Sequence derived from alignment at H-paniculata_contig4723:13392..14519- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCTGGGAGTGCGCAGGATCTAGTAAATTTGCGGCCCTTCACGGCGA
GCTCCCAGGGGAGCTGACATCGTTGACCTTCGGGAGGAAGTTCAACTTGC
CTGTGGATGCCATTGGCTGGCCAGATGCTCTGAGAGAAATCGTTTTCGGG
GAGGCGTTTTCACAACCGATTGACAACGTGTCCTGGCCCTCTGGTCTCCA
GCGGCTCAGATTCGGAGCGTTTTACAATCAACCCTTGCACGGGGTGCGAT
GGCCGTTGGGATTGAAGGGGTTGTCGTTCGGGGCTAAATTCGACAAACCC
TTGAACGCGGTGAAGTGGCCATGCGCGCTCGAGACCATTGCTCTTGGAGA
GTGTTTTTCTTGGGATCTAGCGACGACTTCTTTTCCGCCTGGCTTGCGAA
TATTGACCCTGGCAGGGGCCTTCCCGGGCAACATCCACAAGGTTCCCCTT
CCAGAAGGGTTGGAGGAAATCTCACTGTGCCACTTCGACCAGCCTCTTGA
CGGCTTCACTCTGCCCTTGGGCCTGAAGCGACTGAAACTCGGCGACCTCT
TCAACCGGCCGATCGAGCGTGTGATTTGGCCACAGGGTCTAAAGCGACTC
ACCTTTGGCGATTGCTTTAACCAGCCGATATGTGGCGGATCCCTGCCCGT
CGGCCTAGAGACGCTCGAGTTCGGCCGGGATTTTAACCGGTCGATTCGAG
GTGCCGCGGTGTTGCCGGCAGGTTTGTGGGAGCTCTCGTTCGGTGACAGG
TTTAATCAGGATGCTGTCGGTGTGAATTGGCCGCCGGGTCTGAAAGTGCT
CTCCTTCGGGGAGAAGTTCAACCGCGAGGTCGGAGAAGTCGCCTGGCCTG
CAACCCTCCAACAGTTGTCGTTCCCGGGGAAATTTAACCAGCCGGTTGTT
GGTGTATCATGGCCACCGGGCTTACGACATCTTGGTTTTGGGCATTCCTT
CAATCAGGCCCTGGGCGAGGTCAAGTTGCCCATAAGTCTAGAATTACTCG
AGCTCGGCGAGGCCTTCAGACAGCCGGTTGATGGAGTTCTGTGGCCAGTG
GGTTTGAAACGTCTCGCTGTCGGGCCGAAAGTCATATTGCAGGCCCTCCA
GGAAGCCAGGTTTCCAGACGGGCTCAAGATGATCTGGGAGTGCGCAGGAT
CTAGTAAATTTGCGGCCCTTCACGGCGAGCTCCCAGGGGAGCTGACATCG
TTGACCTTCGGGAGGAAGTTCAACTTGCCTGTGGATGCCATTGGCTGGCC
AGATGCTCTGAGAGAAATCGTTTTCGGGGAGGCGTTTTCACAACCGATTG
ACAACGTGTCCTGGCCCTCTGGTCTCCAGCGGCTCAGATTCGGAGCGTTT
TACAATCAACCCTTGCACGGGGTGCGATGGCCGTTGGGATTGAAGGGGTT
GTCGTTCGGGGCTAAATTCGACAAACCCTTGAACGCGGTGAAGTGGCCAT
GCGCGCTCGAGACCATTGCTCTTGGAGAGTGTTTTTCTTGGGATCTAGCG
ACGACTTCTTTTCCGCCTGGCTTGCGAATATTGACCCTGGCAGGGGCCTT
CCCGGGCAACATCCACAAGGTTCCCCTTCCAGAAGGGTTGGAGGAAATCT
CACTGTGCCACTTCGACCAGCCTCTTGACGGCTTCACTCTGCCCTTGGGC
CTGAAGCGACTGAAACTCGGCGACCTCTTCAACCGGCCGATCGAGCGTGT
GATTTGGCCACAGGGTCTAAAGCGACTCACCTTTGGCGATTGCTTTAACC
AGCCGATATGTGGCGGATCCCTGCCCGTCGGCCTAGAGACGCTCGAGTTC
GGCCGGGATTTTAACCGGTCGATTCGAGGTGCCGCGGTGTTGCCGGCAGG
TTTGTGGGAGCTCTCGTTCGGTGACAGGTTTAATCAGGATGCTGTCGGTG
TGAATTGGCCGCCGGGTCTGAAAGTGCTCTCCTTCGGGGAGAAGTTCAAC
CGCGAGGTCGGAGAAGTCGCCTGGCCTGCAACCCTCCAACAGTTGTCGTT
CCCGGGGAAATTTAACCAGCCGGTTGTTGGTGTATCATGGCCACCGGGCT
TACGACATCTTGGTTTTGGGCATTCCTTCAATCAGGCCCTGGGCGAGGTC
AAGTTGCCCATAAGTCTAGAATTACTCGAGCTCGGCGAGGCCTTCAGACA
GCCGGTTGATGGAGTTCTGTGGCCAGTGGGTTTGAAACGTCTCGCTGTCG
GGCCGAAAGTCATATTGCAGGCCCTCCAGGAAGCCAGGTTTCCAGACGGG
CTCAAG
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