mRNA_H-paniculata_contig4723.11744.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4723.11744.1
Unique NamemRNA_H-paniculata_contig4723.11744.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4723.11744.1 vs. uniprot
Match: A0A6H5KVS5_9PHAE (GUN4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVS5_9PHAE)

HSP 1 Score: 324 bits (830), Expect = 2.080e-103
Identity = 178/270 (65.93%), Postives = 194/270 (71.85%), Query Frame = 3 
Query:  153 MPSLVTIFLVA-LTTVGSYETSAFVV-PAGGGSLLGPATAAMAACHGKYTSSPNRSHTFSRALSSSYPRRRASAAAGALRMSTTEAPEVPVVTAEAMDAQASPVAAGDIPTNLPSEAGIDYVPLATMLATGDLKGADQFTRDALIRAAGAGSQKRDFVYWTEVKKIPNTDMATMENLWLKYSKGKFGYSVQKELWRKTKGDFENFCRRIGWTTQDSEVERKLRWFGANEFIYDVDKAPTGHLPLTSALRGTQLLKELLQHSVWETEWQWK 956
            M S   +  VA +  +G   TSAF   P    S    A A  +  H   T +P+R H  ++A    Y        A  LRMST E  E P   A    A+       DIPT LPSE GIDYVPLATMLATGDLKGADQFTRDALI+AAGAGSQKRDFVYWTEVK IPNTD+ATMENLWL YSKGKFGYSVQK+LWRKTKGDFENFCRRIGWTT D+EVERKLRWFGANEFIYDVD+AP GHLPLTSALRGT LLKEL+ H VWETEW+WK
Sbjct:    1 MVSCAVLMAVAGIAMLGPSTTSAFTASPTSIRSQHSRAAARPSCDHAASTQAPSRHHAAAKAGGRRY--------ASQLRMSTAE--ETPAAAAATAVAREP---TRDIPTTLPSECGIDYVPLATMLATGDLKGADQFTRDALIKAAGAGSQKRDFVYWTEVKNIPNTDLATMENLWLSYSKGKFGYSVQKDLWRKTKGDFENFCRRIGWTTMDAEVERKLRWFGANEFIYDVDRAPRGHLPLTSALRGTTLLKELMMHPVWETEWEWK 257
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BLAST of mRNA_H-paniculata_contig4723.11744.1 vs. uniprot
Match: A0A836C7C7_9STRA (GUN4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7C7_9STRA)

HSP 1 Score: 279 bits (713), Expect = 1.910e-86
Identity = 129/160 (80.62%), Postives = 140/160 (87.50%), Query Frame = 3 
Query:  468 DIPTNLPSEAGIDYVPLATMLATGDLKGADQFTRDALIRAAGAGSQKRDFVYWTEVKKIPNTDMATMENLWLKYSKGKFGYSVQKELWRKTKGDFENFCRRIGWTTQDSEVERKLRWFGANEFIYDVDKAPTGHLPLTSALRGTQLLKELLQHSVWETEW 947
            D P NL S+AGIDYVPLATMLATGD KGADQFTRDALIRAAG GSQKR FVYWT+VK IPN D+AT+E LWLKYS GKFGYSVQ E+W++ KGDFENFCR IGW T+  E+ERKLRWFGANEFIYD ++AP GHLPLTSALRGTQLLKELL H VWETEW
Sbjct:   63 DAPDNLSSDAGIDYVPLATMLATGDFKGADQFTRDALIRAAGEGSQKRGFVYWTDVKNIPNKDLATIEKLWLKYSGGKFGYSVQAEVWKRKKGDFENFCRTIGWNTKSEEIERKLRWFGANEFIYDAERAPKGHLPLTSALRGTQLLKELLNHPVWETEW 222
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BLAST of mRNA_H-paniculata_contig4723.11744.1 vs. uniprot
Match: A0A7S2R3S6_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R3S6_9STRA)

HSP 1 Score: 252 bits (643), Expect = 7.260e-76
Identity = 121/171 (70.76%), Postives = 142/171 (83.04%), Query Frame = 3 
Query:  450 SPVAAGDIPTNLPSEAGIDYVPLATMLATGDLKGADQFTRDALIRAAGAGSQKRDFVYWTEVKKIPNTDMATMENLWLKYSKGKFGYSVQKELWRKTKGDFENFCRRIGWTTQDSEVERKLRWFGANEFIYDVDKAPTGHLPLTSALRGTQLLKELLQHSVWETEWQWK*E 962
            S V+ G+IPTNLPS+ G+DYVPLATMLATG L  ADQFTRDALI+  GA  + R+FVYWTEVK IP+TD+AT+E LW K+S GKFGYSVQK+ WR++K DFE FCR+IGWTT+D +VERK RWFGA+EFIYDV KAP GHLPLTSALRGT L+K+LL H VWE +  WK E
Sbjct:   70 STVSDGEIPTNLPSDMGMDYVPLATMLATGQLAEADQFTRDALIKLCGATEKGRNFVYWTEVKLIPSTDLATIERLWNKFSGGKFGYSVQKKKWRQSKNDFEVFCRKIGWTTKDGDVERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLIKQLLTHPVWEND-DWKIE 239
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BLAST of mRNA_H-paniculata_contig4723.11744.1 vs. uniprot
Match: A0A7S2UF66_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UF66_9STRA)

HSP 1 Score: 251 bits (642), Expect = 7.840e-76
Identity = 122/173 (70.52%), Postives = 143/173 (82.66%), Query Frame = 3 
Query:  444 QASPVAAGDIPTNLPSEAGIDYVPLATMLATGDLKGADQFTRDALIRAAGAGSQKRDFVYWTEVKKIPNTDMATMENLWLKYSKGKFGYSVQKELWRKTKGDFENFCRRIGWTTQDSEVERKLRWFGANEFIYDVDKAPTGHLPLTSALRGTQLLKELLQHSVWETEWQWK*E 962
            QAS VA  +IPTNLPS+ G+DYVPLATMLATG L  ADQFTRDALI  AG+  + RDFVY+TEVK +P TD+ATME LW K+SKGKFGYSVQK+ W+++KGDFE FC +IGWTT+D +VERK RWFGA+EFIYDV KAP GHLPLTSALRGT LLK++L H VW+ +  WK E
Sbjct:   60 QASDVAEEEIPTNLPSDVGMDYVPLATMLATGQLAEADQFTRDALIVIAGSKEKGRDFVYFTEVKNMPATDLATMERLWNKFSKGKFGYSVQKKKWKQSKGDFEAFCSKIGWTTKDGDVERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLLKQMLNHPVWDND-DWKKE 231
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BLAST of mRNA_H-paniculata_contig4723.11744.1 vs. uniprot
Match: A0A1Z5KQ11_FISSO (GUN4 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQ11_FISSO)

HSP 1 Score: 250 bits (639), Expect = 1.840e-75
Identity = 120/164 (73.17%), Postives = 138/164 (84.15%), Query Frame = 3 
Query:  471 IPTNLPSEAGIDYVPLATMLATGDLKGADQFTRDALIRAAGAGSQKRDFVYWTEVKKIPNTDMATMENLWLKYSKGKFGYSVQKELWRKTKGDFENFCRRIGWTTQDSEVERKLRWFGANEFIYDVDKAPTGHLPLTSALRGTQLLKELLQHSVWETEWQWK*E 962
            IPTNLPS  G+DYVPLATMLATGDL  ADQFTRDALI  +GA ++ R+FVY+T+VK IP+TD+ATME LW K+SKGKFGYSVQK+ W ++KGDFE FCR+IGWTT D EVERK RWFGA+EFIYDV KAP GHLPLTSALRGT L+K LL+H VW+ E  WK E
Sbjct:   64 IPTNLPSACGMDYVPLATMLATGDLVAADQFTRDALIEISGAKAKGRNFVYFTDVKNIPSTDLATMERLWNKFSKGKFGYSVQKKKWNQSKGDFEVFCRKIGWTTTDGEVERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLIKSLLKHPVWDNE-DWKKE 226
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BLAST of mRNA_H-paniculata_contig4723.11744.1 vs. uniprot
Match: A0A7S0FNL4_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FNL4_9STRA)

HSP 1 Score: 250 bits (639), Expect = 1.900e-75
Identity = 118/168 (70.24%), Postives = 140/168 (83.33%), Query Frame = 3 
Query:  468 DIPTNLPSEAGIDYVPLATMLATGDLKGADQFTRDALIRAAGAGSQKRDFVYWTEVKKIPNTDMATMENLWLKYSKGKFGYSVQKELWRKTKGDFENFCRRIGWTTQDSEVERKLRWFGANEFIYDVDKAPTGHLPLTSALRGTQLLKELLQHSVWETEWQWK*ELTR 971
            +IPTNLPS+ G+DYVPLATMLATG L  ADQFTRDALI  AG+  + RDFVYWTEVK+IP TD+AT+E LW K+S GKFGYSVQK +W+++KGDFE +C++IGWTTQD EVERK RWFGA+EF YDV KAP GHLPLTSALRGT L+K+LL H VWE +  WK E ++
Sbjct:   62 EIPTNLPSDVGMDYVPLATMLATGQLVEADQFTRDALIVLAGSKEKGRDFVYWTEVKEIPATDLATIERLWNKFSGGKFGYSVQKRIWKRSKGDFELWCKKIGWTTQDGEVERKKRWFGASEFTYDVKKAPEGHLPLTSALRGTSLIKQLLDHPVWEND-DWKNEPSK 228
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BLAST of mRNA_H-paniculata_contig4723.11744.1 vs. uniprot
Match: A0A6S8ZHG1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZHG1_9STRA)

HSP 1 Score: 249 bits (635), Expect = 9.310e-75
Identity = 121/168 (72.02%), Postives = 139/168 (82.74%), Query Frame = 3 
Query:  450 SPVAAGDIPTNLPSEAGIDYVPLATMLATGDLKGADQFTRDALIRAAGAGSQKRDFVYWTEVKKIPNTDMATMENLWLKYSKGKFGYSVQKELWRKTKGDFENFCRRIGWTTQDSEVERKLRWFGANEFIYDVDKAPTGHLPLTSALRGTQLLKELLQHSVWETE-WQ 950
            S  A  DIPTNLPS+ G+DYVPLATMLATG L  ADQFTRDALI  AG+ ++ RDFVY+TEVK IP+TD+AT+E LW K+SKGKFGYSVQK  +R+ K DFE FCR+IGWTT+D EVERK RWFGA+EFIYDV KAP GHLPLTSALRGT L+KELL H VW+ + WQ
Sbjct:   63 SDTAEEDIPTNLPSDVGMDYVPLATMLATGQLAEADQFTRDALIVLAGSKAKGRDFVYFTEVKNIPSTDLATIERLWSKFSKGKFGYSVQKRKYRQAKNDFEAFCRKIGWTTKDGEVERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTSLIKELLNHPVWDNDDWQ 230
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BLAST of mRNA_H-paniculata_contig4723.11744.1 vs. uniprot
Match: A0A7S2P4E3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P4E3_9STRA)

HSP 1 Score: 247 bits (631), Expect = 2.520e-74
Identity = 119/165 (72.12%), Postives = 134/165 (81.21%), Query Frame = 3 
Query:  468 DIPTNLPSEAGIDYVPLATMLATGDLKGADQFTRDALIRAAGAGSQKRDFVYWTEVKKIPNTDMATMENLWLKYSKGKFGYSVQKELWRKTKGDFENFCRRIGWTTQDSEVERKLRWFGANEFIYDVDKAPTGHLPLTSALRGTQLLKELLQHSVWETEWQWK*E 962
            +IPT LPS  G DYVPLATMLATG L  ADQFTRDALI  +GA ++ R FVYWTEVK IPN D+AT+E LW K+S GKFGY+VQK+ WR++KGDFE FCR+IGWTTQD EVERK RWFGA+EFIYDV KAP GHLPLTSALRGT L+K LL H VWE +  WK E
Sbjct:   60 EIPTKLPSAVGKDYVPLATMLATGQLAEADQFTRDALIEISGAKAKGRSFVYWTEVKNIPNEDLATIERLWNKFSGGKFGYTVQKKKWRQSKGDFEAFCRKIGWTTQDGEVERKKRWFGASEFIYDVKKAPEGHLPLTSALRGTPLIKNLLNHPVWEND-DWKKE 223
[Close]
BLAST of mRNA_H-paniculata_contig4723.11744.1 vs. uniprot
Match: A0A7R9YVG1_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YVG1_9STRA)

HSP 1 Score: 246 bits (627), Expect = 1.320e-73
Identity = 123/184 (66.85%), Postives = 144/184 (78.26%), Query Frame = 3 
Query:  411 VPVVTAEAMDAQASPVAAGDIPTNLPSEAGIDYVPLATMLATGDLKGADQFTRDALIRAAGAGSQKRDFVYWTEVKKIPNTDMATMENLWLKYSKGKFGYSVQKELWRKTKGDFENFCRRIGWTTQDSEVERKLRWFGANEFIYDVDKAPTGHLPLTSALRGTQLLKELLQHSVWETEWQWK*E 962
            VP  TA+A D     VA   IPT LPS+ G+DY+PLATMLATG L  AD+FTR+ALI  AG+    R+FVYWTEVKKIP+TD+AT+E LW K+S GKFGY+VQK+ W+++KGDFE FCR+IGWTT D EVERK RWFGA+EF YDV KAP GHLPLTSALRGT L+KELL H VWE +  WK E
Sbjct:   53 VPPETADATD-----VAEAVIPTILPSDVGMDYIPLATMLATGQLAEADEFTRNALITLAGSKDAGRNFVYWTEVKKIPSTDLATIERLWSKFSGGKFGYTVQKKKWKQSKGDFEVFCRKIGWTTTDGEVERKKRWFGASEFTYDVKKAPEGHLPLTSALRGTSLIKELLTHPVWEND-DWKKE 230
[Close]
BLAST of mRNA_H-paniculata_contig4723.11744.1 vs. uniprot
Match: A0A6U3XS79_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3XS79_9STRA)

HSP 1 Score: 242 bits (618), Expect = 2.780e-72
Identity = 115/164 (70.12%), Postives = 135/164 (82.32%), Query Frame = 3 
Query:  471 IPTNLPSEAGIDYVPLATMLATGDLKGADQFTRDALIRAAGAGSQKRDFVYWTEVKKIPNTDMATMENLWLKYSKGKFGYSVQKELWRKTKGDFENFCRRIGWTTQDSEVERKLRWFGANEFIYDVDKAPTGHLPLTSALRGTQLLKELLQHSVWETEWQWK*E 962
            IPT LPS+ G+DYVPLATMLATG    ADQFTRDALI  AG+  + R FVYWTEVK+IP+TD+AT+E LW K+SKGKFGYSVQK+ WR++K DFE +C++IGWTT D +VERK RWFGA+EFIYD+ KAP GHLPLTSALRGT L+KELL H VWE +  WK E
Sbjct:   70 IPTKLPSDVGMDYVPLATMLATGQWAEADQFTRDALIVLAGSKEKGRTFVYWTEVKRIPSTDLATIERLWNKFSKGKFGYSVQKKKWRQSKNDFEAWCKKIGWTTTDGDVERKKRWFGASEFIYDLKKAPEGHLPLTSALRGTSLIKELLNHPVWEND-DWKKE 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4723.11744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVS5_9PHAE2.080e-10365.93GUN4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A836C7C7_9STRA1.910e-8680.63GUN4 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2R3S6_9STRA7.260e-7670.76Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2UF66_9STRA7.840e-7670.52Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A1Z5KQ11_FISSO1.840e-7573.17GUN4 domain-containing protein n=2 Tax=Fistulifera... [more]
A0A7S0FNL4_9STRA1.900e-7570.24Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A6S8ZHG1_9STRA9.310e-7572.02Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2P4E3_9STRA2.520e-7472.12Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7R9YVG1_9STRA1.320e-7366.85Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6U3XS79_9STRA2.780e-7270.12Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4723contigH-paniculata_contig4723:5034..12677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score237.7
Seed ortholog evalue6.5e-60
Seed eggNOG ortholog35128.Thaps263658
Preferred nameGUN4
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009536,GO:0009987,GO:0010019,GO:0015994,GO:0015995,GO:0018130,GO:0019438,GO:0019899,GO:0023052,GO:0033013,GO:0033014,GO:0034641,GO:0042440,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046906,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051186,GO:0051188,GO:0051716,GO:0065007,GO:0065009,GO:0071704,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.GUN4-like
EggNOG OGs28PU6@1,2QWGS@2759,2XCTR@2836
Ec32 ortholog descriptiontetrapyrrole-binding protein
Ec32 orthologEc-08_001130.1
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons3
Model size1978
Cds size807
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4723.11744.1prot_H-paniculata_contig4723.11744.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4723 5186..11658 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930404.7380912-UTR-H-paniculata_contig4723:5033..51851622930404.7380912-UTR-H-paniculata_contig4723:5033..5185Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4723 5034..5185 +
1691481276.602592-UTR-H-paniculata_contig4723:5033..51851691481276.602592-UTR-H-paniculata_contig4723:5033..5185Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4723 5034..5185 +
1622930404.8315287-UTR-H-paniculata_contig4723:11658..126771622930404.8315287-UTR-H-paniculata_contig4723:11658..12677Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4723 11659..12677 +
1691481276.642894-UTR-H-paniculata_contig4723:11658..126771691481276.642894-UTR-H-paniculata_contig4723:11658..12677Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4723 11659..12677 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930404.7535546-CDS-H-paniculata_contig4723:5185..56821622930404.7535546-CDS-H-paniculata_contig4723:5185..5682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4723 5186..5682 +
1691481276.6145134-CDS-H-paniculata_contig4723:5185..56821691481276.6145134-CDS-H-paniculata_contig4723:5185..5682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4723 5186..5682 +
1622930404.7703927-CDS-H-paniculata_contig4723:9739..98871622930404.7703927-CDS-H-paniculata_contig4723:9739..9887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4723 9740..9887 +
1691481276.6242068-CDS-H-paniculata_contig4723:9739..98871691481276.6242068-CDS-H-paniculata_contig4723:9739..9887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4723 9740..9887 +
1622930404.7853947-CDS-H-paniculata_contig4723:11496..116581622930404.7853947-CDS-H-paniculata_contig4723:11496..11658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4723 11497..11658 +
1691481276.633459-CDS-H-paniculata_contig4723:11496..116581691481276.633459-CDS-H-paniculata_contig4723:11496..11658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4723 11497..11658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4723.11744.1

>prot_H-paniculata_contig4723.11744.1 ID=prot_H-paniculata_contig4723.11744.1|Name=mRNA_H-paniculata_contig4723.11744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=269bp
MPSLVTIFLVALTTVGSYETSAFVVPAGGGSLLGPATAAMAACHGKYTSS
PNRSHTFSRALSSSYPRRRASAAAGALRMSTTEAPEVPVVTAEAMDAQAS
PVAAGDIPTNLPSEAGIDYVPLATMLATGDLKGADQFTRDALIRAAGAGS
QKRDFVYWTEVKKIPNTDMATMENLWLKYSKGKFGYSVQKELWRKTKGDF
ENFCRRIGWTTQDSEVERKLRWFGANEFIYDVDKAPTGHLPLTSALRGTQ
LLKELLQHSVWETEWQWK*
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mRNA from alignment at H-paniculata_contig4723:5034..12677+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4723.11744.1 ID=mRNA_H-paniculata_contig4723.11744.1|Name=mRNA_H-paniculata_contig4723.11744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7644bp|location=Sequence derived from alignment at H-paniculata_contig4723:5034..12677+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTACTCCTACTAGTAGTATTGGTAATAACTGAGACTGAGAGAAAGGCCA
ACAAACGCACTTGTCCAAGAGGACGCAGCACACAGGTCGTTATAGCCGAA
GCCCTGTGACAGCACTCATTTTGTATTCTTCCAGAGTTAACCATCATCCA
TCATGCCGTCTTTGGTAACGATATTTCTGGTGGCGTTGACAACCGTGGGG
TCCTACGAGACAAGCGCATTTGTTGTCCCAGCCGGCGGCGGTTCGCTCCT
GGGCCCGGCGACGGCGGCGATGGCGGCCTGTCATGGGAAGTACACTTCCT
CCCCCAACCGATCACACACCTTTTCCCGAGCATTAAGTAGTAGCTACCCC
AGGAGGCGCGCTTCTGCAGCTGCAGGTGCCCTAAGAATGAGCACCACCGA
AGCGCCTGAGGTCCCTGTGGTGACAGCAGAGGCCATGGACGCGCAAGCCT
CTCCGGTCGCAGCAGGCGACATCCCTACCAACCTGCCGTCGGAGGCAGGG
ATAGACTACGTGCCGCTGGCAACGATGCTGGCAACGGGCGATCTTAAGGG
GGCAGACCAGTTTACGCGGGATGCATTGATTAGGGCGGCCGGCGCGGGGA
GCCAAAAGCGAGATTTTGTGTACTGGACCGAGGTCAAGAAAATCCCCAAG
TATGTGCACCAAAGTTTATGATACCCATGTATGGTGCAGTAGAGGCGCTG
TCTGTTTTTATGAGTTGCATGATTTGCAGGTCCTCATGTTACCTGACCGT
CTCTCGCGGTAGCAGGTGTTCATGTGTCTCCACGAGAGATAACGGGGCAA
GGATGTTACGTTCATTGAGTTCTGTTGTTGGTGATGGTGCTGTACTGCCA
CTGCTGCTTCTGCTGCAGTTGTGTATTTGTCGCCCCATCCAGTTCGGCCC
CAAAGCGAGCGATGTATAGCCGGGAACGATGTCTGCACCTGTTGAATCGA
CTCTCCTATTCGTCTGGGCCGTCGTGCTTGTACCTCATTAGATACTACTA
GATCACATTGTACGTATACGTTTATCTATATCGGACTGCAACAACGGAAT
AATTGCAGTTGCCGGGTGTACCGTTGCGCTCGGTATGCTTTTGGTTGGAG
GATGGCCTTGCGTTGATCAGATAAATTTCGGAAACCTACACTTGGTGGTA
CAAGGTATGTCCTGACTGATTGTTTTTGTAGTCCATCAGTAGTCACGATT
AGTCTGTGCACTCGTACTGAAAAATAGTTCTACAGGGGTACTTCGATAGA
AAACGTCCCAAACCTGCCCTATGCTGAGTTCTGTATCAGTTAGGTGTCTG
TTAATGTTTGTGTACCTGTGACGATGAACTACATTAGCTACTGCTTCCCT
GACTGCCGTATATCACTGCTCTACAGTCGGTGTACCGTTGAATAGGCACA
GCTGTCTCAAAGTCGGGTACAACTGCTCCTACTCCTGTACGTTACATGCT
TTGGATACCATTTGCTATTTCGGAACAAAAATCCATCTTCACGTTATATC
TGTCAAGCGCTGCACTAGTGGAGCGCAGAACCATGTCAGCTCCCTGCATG
TACTTGAAATTTACGAGCTGTCTAAAACGGCCTTACCTCCCACAACTCAT
AATTTCTAACTATGTGATGGAGAATGTGTTCCTCTCTATTTTTGCGATAG
GATTGTTCGTATAGACCAGCGCCTACAGATGCAACACTGACCACCACAGC
GGTTGATAATTTTCCGAGCTTAACTTTCTCCAGCAGCAAACCCTTGCCGC
ACTGACTGTCGGAGGAGCTTGTTGATTTACACCTCCCGAGGAGATCTTCG
CCAACACACGGTCGGTGTAAACTGCGTCACAAACCTCGAAATTAATTAGT
TTTCGAATATCTTCATAATATCGAAAGCATCGAGGGATAATATGTGCCCT
GTAAACCGCGGTACTGTACCGGCGTTCCTGTACTGTGCCACTTTACCAAG
TGTGCTGTGCTGAGGACAAAACATTCGCGTGTTGTTTTGTTGCAATGTGT
CCTAGCCGTGATGCCTGTGCACGTGTTAGCTACTCTCTATTTTGTGAGGT
TACTTCTTGTCTGTTGAGCATATATTGCGTAGTCAACACAATGATATTTT
CATGCCTACCACATACATGTTCCTAGACAACGTTTCATACATTCGACGGG
TCATGACCCGCACACTCTGTGCCCTACACATCGGTGGCAGAGAACAGGTA
ATAGTGATGCGTAAGCTACGCACCACCCTTGAATAAAAATTTACGCATCA
TAGGGGCGTTTACGGGTCAATTGAGACAAACTGTGTGCTGATGGCGCAAA
GTGTACGCATCAGCAATGGACAGACATGTACGCATCATAGCGCTTGTACG
GCTCAGCAGTAGGCAAACATGTTCAACAGGAGATACGCATGTACGGATAC
TACGTCACGTACTCATCATGGATACATGATACAAAACTACTAGTCTACAC
GCCACTTGGAGAGAGAGAGAACACTAGGCTTGTTAATCCTCGCCTGTGTC
CACCTGGTTCCTGCCTGACAAAAATGGGGGTAAGCACGTTCAGTGTGATT
GCGGGAAGAGGGACCTACTACAATTCAGAGAGTGGACCAAGTACATGCAG
CTCGAACAGGGAATTCATAGCTCTATGCATAACGATTACAGCACTCGATG
TTGTTATGCACCATGACCAACTACTACGGGATGAGTTATGGGTGACTGTG
CGTAGCGTGGGGCGGGGTGAGCAAGTCGTGCTGCTGCACATAAATCTGTG
TACCCTTCTTGTTTACATGTCAATTTGTAAAAACTTGTGATGTTTTCCTT
ATCTATCCACCATGGACCCATAGGCACCACATGATCTGGTTCAGCACAGC
TAATGTTTTTATAGGCTCCTCACATACGTTGATGTCTGTCTGTCGTTGAC
CCATGCTCTTTCACAATTATTTTCAAATTTGGAAGTCCAGGTCGTATGGC
TCAGGCTCTTCCCACATACACGGAACAACACGGTGTACGGTCCTAGGCTC
TTCCCACACACAACGATCATTGTGGCGTATGGCTCAGACTCTTCTCACAT
ACACGGAACAACACGGTCTACGGCCCTAGGCTCTTCCCACACACAACAAT
CATTGTGGCGTATGGCTCAGGCTCTCACATACAAGGAACAATACGGACAA
CGGCCCAAGGCGCCTCCCACACACACAGAATTTGTGGCGAATTGCTCCGG
CTCTTTCCTCACTCACGGAAAACTATGATGAAAGCATCACCGTTGAAAAA
CAATGCACTAGTTATGTGTATCACAGGGCGTGTACGGATCAATTGAGATA
AAATGGGTGCTGATGATGCATACCAAATACATCAGCAATGAAAGAATATG
TACACATCATGAAGCGCGTATGGATCAATCGATACAAAATGTGTGCTGGT
GATGCATAGCGTACGCATCAGCAATGGACAAACATGCACGCATCGTAAAG
GCATGTAAGCATCAATAGGAATGATCCATCCAATGATGCGCATCGGATGA
ATCACAAGCTATACCATCGGATGTGTGCAACGTTTTTCATCTCGGATATA
GGAGCGGTCGGGTACTAGCCTTCACCGACCTCAATCCCCTGTAGAGATGA
AAGTGTGGTGATCAGCTAATTACGAATCCGAAAATCCAATGAAGGTTTCA
AGGACAGCTAATTACGAAACCGAAAATTCGATTAAGGAACATCAAGGTTA
ACGCCTTCATTGGACCGCTCCTTCGCGTTCGATGATGATGCGTCGAGGTT
AGCACCTTCATTCTACCGGTCCTTCATATTCATGCGAGGTTTTAGTAGCT
AGATGAACCAAAATATTGCTACTGCAATGTTAATGTGCATGTTGTCGACT
ATTAACCGCTGCATGCGTGCGTTTTTATTCACGCACTTCGACCAAATTCC
AATCTTGACATGCATGCGTACGGCGACACACACATTCGCAGGCCCTTGTA
ATTTGAGAACAGCGCTGTTAGAAGTTTGGATGCCTGGCCGAACATGTGAA
ACGTTGGCAAAGTCACGAGGGATGTAGGACTTGAAACAAGAAAAAACGAC
AATGATAATAAAGAACAGAGACAGACGCTCCTAACTAAATGGGGAAGAAA
ACGAAAGCAAAACAATCCTTCAAGTTCTGAACATCAGCTAAGTACGAAAC
CGACAAACTTCGATGAAGGTCTAAAGGTCAGCTAATCTTGAAACCCGAAA
TTCGATGAAGGTTTGAAGGTCGACTTATTTTGAATTACTATTTGGACATA
AAGAGTAAAGCTAAGCCTTTACCGCTCCTTTTTCCAAGGCGTGCAAATTT
TTATGTTTACTACACAATAGTCAAGTGCGCTGCACCACCACTGTCTCCTG
TCGTCCTTCAGCGGTATATTTTAGCAATCAGCTATTTCTGATGCGCTCGA
GATTCATATCGCAGTCTGTTTGTCTTCGGGACGCCACCAGTATGCATGCC
GCCCAAACAGCGTGCACAGGAGAGTTCTGTTTTAGAACATGCCTCAGTAT
TCGCCTGTTCTAAGCTATCTCGATGCGGCACCTTTTGGTACTCCGTGTCA
AGTGCTGCGCAGATCGTGCAGCCAATTCCCTTCACCATATATTCTATTTT
AACCATGTCTTTTTCGTATTACAGATTTTTAATTTTGCAAAGGCCTTGGA
ACAGGTTCTTACATATGTACCAACTATTGCGCACTACCTGTACGCGTCCG
CCGCAGCACCGACATGGCCACGATGGAAAACTTGTGGCTTAAATACAGCA
AGGGTAAGTTCGGGTACAGCGTGCAGAAGGAACTTTGGCGCAAGACGAAG
GGAGACTTCGAGAACTTCTGCCGCCGCATTGGCTGGACCACCCAGGACTC
AGAGGTAAAATTGGGTCCCCATTAGATGTACTAAAAGGAAGTAATGAACC
CGTGACCAACAACGAAACAACCGTTATTTTTTTGTGTTATTTGGTCATTT
TTTTAGGTTTTGTCCTCCAAGATGACGGAGTCAGACGATAGTGTAAATGA
ACCTTTCCCCAAATGTGATAATCCAGACTTCATTTCTTGTCAAACACATG
ATGTTTTACCAGGGTTTCAAAAGGTCGTCGCAGTACTGTACCAGTAGCAG
TATACTGTATGTCTACTAGACTCGATTGAGTGTAATGGGTTTAACAAGAG
ATGGCCCCGAAAATGCTGGGTATTCCCTTCCATGTACGTCCTTCTCTCCT
TTCCATTTTATATCACGTCCATTTCACTGAATCCAGACCACTTTGCTCGA
TATTCACTGGTACTGCTAGAGTGGATCCAGACAAGAATAGCAGGCATCGC
CGCCCGTCATAATACACCTTGTAGGAAGACTTGGGAAACCCCCCCCGACA
AGTGCAATCCTGAGTAAAAACTGACTGTGCCCAGATTTATTGTCAAAATC
GGAGCCGCCAGTGGGCCAGGAAATTATCTCATAATTTTTCGTGCATACTA
GAATCAAATATTTAACAAATGCGGCGCAACTTCTCTACAATACCCTAAAC
TATATATTATCAAGGCCTACATAAAAGCCCGTAGCATAAATCACCCGTTG
GCATTTTGGTTCTTATCTCACGTTCGATATAATTGTTCGCTACGTGTACG
GAATTGTGTGAAAGACGACATCATGATCTACGCAGACGTGTCGTTCTCCG
CTTATCCCGTACTACGTCTGATGTCATTAACAGTGAAAAAGTCAGATTTG
AAAATATCAAATGAAGGCCTTCGCGAGACGAGGAAAGCAGCAGAGAGTCT
CATTGGAAAGCTGTTTTACAAACCTTCCCAACGAACCCTAGCATGTTATC
ATCTGTGTCGTACCTTCGATCCAGAGAAGAATGTCATACCAAATAGTTTC
GTCTGGATCCACTTTACTGTGCTGCGAACAATCTCACGACTTGACACCCG
ATCCATCTGAAAACCCTAGAGTAGTGGGCACTTTGCCCTCGAGGACCATT
GATTGATTTCCCAGACCCCAAACTTGGTCGAACGGGACAAAGCGACAAAG
AACATGTGGTTACGAAGTTGCTCGCTACGACACCGAACTAATCGCCCCCC
TATTTTCAAGGTACATCATGCATTCCGGCGCTGTAATCGCAGCTTCTGTT
TTGCTTCCTGTGGCGCATTTTTTATCTAATCTGTCGTCGATCAACGATGT
CTCCATCCATGCCGCCTTTTTTGTTGGTCATATCTCTTTCACCAGAGCAT
CTGTCGCGGAAACGCTGACTTGCGATGTCATACACGATATAGTTGTACCG
TATATTGAAATAATCGGTTGTGAAAAAAAATACTTCTTGTATCCCCTTTT
TTGTTGTCTTCTCCCACTATTCATATCTTGACCTAATTTGGACCGTCCGT
TTGGAAAACAATCAGATATCAGTATTAAAATGTTCTGAAATGAGCACTGT
CTTACCTTGTACTGGTGTAAGTTTAATTTGCAAGGATTACCTTTCCTGAT
CACTGAACTCAAGGTGGAGCGCAAGCTGCGTTGGTTCGGCGCGAACGAGT
TCATCTACGACGTCGATAAGGCGCCAACGGGACACTTGCCACTCACCAGC
GCCCTTAGAGGCACCCAGCTTCTGAAGGAGCTATTGCAACACTCCGTCTG
GGAGACAGAGTGGCAGTGGAAGTGAGAACTCACGCGGGTGCAGAGAGGTG
ATATAGCACAGTTTTGACAGCGATAGAAGTGATGCGGGAGGAGCAAGGGT
GCTGTTTAGTAGATGACGGAGCTGATGCGGGGCCATACCGCAGGCATGCA
TGTGCGTGCTGGACGTTGGGCTGTGGATGAGGGAAGCACTGCTATGCCTC
GGGTGCAGATCGCAGCCAGCGGGCGAAAAAGATCGACATTATCAATATTT
GAATTCCGTTGTATCGGTCGTTGGATATGGGAAGGAGCGTACGGCAGGGC
CAAGCATTTACATAACTCAGGGAGTGTTATAGTATCGTCGCATATCCACT
TTTTTCTTGGCCATGGCGACATGTGTAAGGCGTACGTGCGCTGGTAGTGA
AGCGTGTGGCGATGCTGTAGAGCAGTACTTGTGGCTTGTTGGCGCCGAGT
GGGAGGTACTAACGCTGGAGGATAGAGGAGACACAGACCAGTTGAATAAT
TGCGTTGTTGTGTATATTCACGTTTCTTAGATACAGGCAAGTGTCACGGA
ATCATCGTCCTCCAAGAAGCCGACATGGGTACATTTCTCAAAAGTATTTT
TCTGTTTTCAGATTGTCAGATCGCTCTACGATATCAAGTAATTTTTCCCA
CGCTTATTTCGTCATGTTCTATACTTGAAAAATGCGGTCTGGTGGGTGCA
CTGCACTGAAGCAGATCATCTGAAGTCGGAACGCGCTTGGGCCATATCAA
TGGGCGAATCCAATGACTTGAGTCTGTACACCATGTACACCTTAAACTTC
CCTGTTTTGAAGGTAAACTTATAGATACAACTGGAGGCATATATATCTTC
CTAACAGCATGGATCAATAAGAAAAATAGCATATGCATGCTATTTATGAC
ACACCTGGATCTCGTTTGGTCTGCGTACTTACTGTCGACTTGTATTTCCA
GAGGAGAAAAGAGTTTCCGAACATGTGCTACTGGTCACAGGGAGGTTGTT
TCGTATCCAGAGTGTTAGGTGTTTCCCCCCCCTACATATCTTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig4723:5034..12677+

>mRNA_H-paniculata_contig4723.11744.1 ID=mRNA_H-paniculata_contig4723.11744.1|Name=mRNA_H-paniculata_contig4723.11744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1614bp|location=Sequence derived from alignment at H-paniculata_contig4723:5034..12677+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGTCTTTGGTAACGATATTTCTGGTGGCGTTGACAACCGTGGGGTC
CTACGAGACAAGCGCATTTGTTGTCCCAGCCGGCGGCGGTTCGCTCCTGG
GCCCGGCGACGGCGGCGATGGCGGCCTGTCATGGGAAGTACACTTCCTCC
CCCAACCGATCACACACCTTTTCCCGAGCATTAAGTAGTAGCTACCCCAG
GAGGCGCGCTTCTGCAGCTGCAGGTGCCCTAAGAATGAGCACCACCGAAG
CGCCTGAGGTCCCTGTGGTGACAGCAGAGGCCATGGACGCGCAAGCCTCT
CCGGTCGCAGCAGGCGACATCCCTACCAACCTGCCGTCGGAGGCAGGGAT
AGACTACGTGCCGCTGGCAACGATGCTGGCAACGGGCGATCTTAAGGGGG
CAGACCAGTTTACGCGGGATGCATTGATTAGGGCGGCCGGCGCGGGGAGC
CAAAAGCGAGATTTTGTGTACTGGACCGAGGTCAAGAAAATCCCCAAATG
CCGTCTTTGGTAACGATATTTCTGGTGGCGTTGACAACCGTGGGGTCCTA
CGAGACAAGCGCATTTGTTGTCCCAGCCGGCGGCGGTTCGCTCCTGGGCC
CGGCGACGGCGGCGATGGCGGCCTGTCATGGGAAGTACACTTCCTCCCCC
AACCGATCACACACCTTTTCCCGAGCATTAAGTAGTAGCTACCCCAGGAG
GCGCGCTTCTGCAGCTGCAGGTGCCCTAAGAATGAGCACCACCGAAGCGC
CTGAGGTCCCTGTGGTGACAGCAGAGGCCATGGACGCGCAAGCCTCTCCG
GTCGCAGCAGGCGACATCCCTACCAACCTGCCGTCGGAGGCAGGGATAGA
CTACGTGCCGCTGGCAACGATGCTGGCAACGGGCGATCTTAAGGGGGCAG
ACCAGTTTACGCGGGATGCATTGATTAGGGCGGCCGGCGCGGGGAGCCAA
AAGCGAGATTTTGTGTACTGGACCGAGGTCAAGAAAATCCCCAACACCGA
CATGGCCACGATGGAAAACTTGTGGCTTAAATACAGCAAGGGTAAGTTCG
GGTACAGCGTGCAGAAGGAACTTTGGCGCAAGACGAAGGGAGACTTCGAG
AACTTCTGCCGCCGCATTGGCTGGACCACCCAGGACTCAGAGCACCGACA
TGGCCACGATGGAAAACTTGTGGCTTAAATACAGCAAGGGTAAGTTCGGG
TACAGCGTGCAGAAGGAACTTTGGCGCAAGACGAAGGGAGACTTCGAGAA
CTTCTGCCGCCGCATTGGCTGGACCACCCAGGACTCAGAGGTGGAGCGCA
AGCTGCGTTGGTTCGGCGCGAACGAGTTCATCTACGACGTCGATAAGGCG
CCAACGGGACACTTGCCACTCACCAGCGCCCTTAGAGGCACCCAGCTTCT
GAAGGAGCTATTGCAACACTCCGTCTGGGAGACAGAGTGGCAGTGGAAGT
GAGTGGAGCGCAAGCTGCGTTGGTTCGGCGCGAACGAGTTCATCTACGAC
GTCGATAAGGCGCCAACGGGACACTTGCCACTCACCAGCGCCCTTAGAGG
CACCCAGCTTCTGAAGGAGCTATTGCAACACTCCGTCTGGGAGACAGAGT
GGCAGTGGAAGTGA
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