mRNA_H-paniculata_contig4723.11743.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4723.11743.1
Unique NamemRNA_H-paniculata_contig4723.11743.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4723.11743.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM)

HSP 1 Score: 150 bits (378), Expect = 3.390e-39
Identity = 84/225 (37.33%), Postives = 133/225 (59.11%), Query Frame = 1 
Query:    1 LTAKGFEQSHAEPCVFRKIMGGEMVAVIIIYVDDLLLISTKGSKIMDELPTDLRSDHKLKDLGDPRYHLGWHIIRDRQKRKLKIDQHLYARSMAERFGITKTSMLPATAGNNTMIKNDGPKTSEEAEEMPAFPYREAVGALMWPATMTRPEIAYAVRTTGKFCENPGVEHK*AVVNILRYVQTTADLGITYGGQDCGVELLAYADSDYATSQESRHSVSGRAVLL 675
            L  +GF +S A+PCV+ +       ++II+YVDDL++ S   ++I  E+   L+ +  +K+LG+ +Y LG  I R+R  + + ++Q  Y + +AE+FG+ K   +   A +N+ +     K +E+   +P +PYRE VGALM+ AT TRP+IA AV    KFCE     H  A   IL+Y++TT DLG+ + G   G EL+ YAD+ +A   ++R S +G    L
Sbjct:   63 LEGQGFHRSAADPCVYVR-RSDSKFSIIIVYVDDLMIFSRTKAEI-GEIKKALKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNSKLV----KPAEDEVFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKG-ELIGYADASWAGDLDTRRSTTGYVFFL 280
[Close]
BLAST of mRNA_H-paniculata_contig4723.11743.1 vs. uniprot
Match: H3H7M7_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7M7_PHYRM)

HSP 1 Score: 152 bits (384), Expect = 3.150e-38
Identity = 85/225 (37.78%), Postives = 134/225 (59.56%), Query Frame = 1 
Query:    1 LTAKGFEQSHAEPCVFRKIMGGEMVAVIIIYVDDLLLISTKGSKIMDELPTDLRSDHKLKDLGDPRYHLGWHIIRDRQKRKLKIDQHLYARSMAERFGITKTSMLPATAGNNTMIKNDGPKTSEEAEEMPAFPYREAVGALMWPATMTRPEIAYAVRTTGKFCENPGVEHK*AVVNILRYVQTTADLGITYGGQDCGVELLAYADSDYATSQESRHSVSGRAVLL 675
            L  +GF +S A+PCV+ +       ++II+YVDDL++ S   ++I  E+   L+ +  +K+LG+ +Y LG  I R+R  + + ++Q  Y + +AE FG+ K   +   A +N+ +     K SE+ + +P +PYRE VGALM+ AT TRP+IA AV    KFCE     H  A   IL+Y++TT DLG+ + G   G EL+ YAD+++A   ++R S +G    L
Sbjct:  832 LEGQGFHRSAADPCVYVR-RSDSKFSIIIVYVDDLMIFSRTKAEI-GEIKKALKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEEFGVEKCKAVHTPADSNSKLV----KPSEDEDFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTPDLGLVFNGGTKG-ELIGYADANWAGDLDTRRSTTGYVFFL 1049
[Close]
BLAST of mRNA_H-paniculata_contig4723.11743.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 2.130e-37
Identity = 90/228 (39.47%), Postives = 129/228 (56.58%), Query Frame = 1 
Query:    1 LTAKGFEQSHAEPCVFRKIMGGEMVAVIIIYVDDLLLISTKGSKIMDELPTDLRSDHKLKDLGDPRYHLGWHIIRDRQKRKLKIDQHLYARSMAERFGITKTSMLPATAGNNTMIKNDGPKTSEEAEEMPAF--PYREAVGALMWPATMTRPEIAYAVRTTGKFCENPGVEHK*AVVNILRYVQTTADLGITYGGQDCGVELLAYADSDYATSQESRHSVSGRAVLLG 678
            L   G+EQ  A+PCVFRKI+ G++V++I+IYVDD++ + ++     +EL T LR    +KDLG+  ++ G  I RD +     + Q  Y   + +RFGIT T+  PA    +      GPK  +E    P    P R+A+G LMWPAT TRP+IA A+    +    P +    A+V IL Y+  T DLGITY  +  G++L  Y D+ YA     R SV+G AV +G
Sbjct: 1455 LVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEG--EELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNADL-----GPKRDDE----PGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYV-RGSGLDLEVYVDASYADRDTGRRSVTGIAVTVG 1670
[Close]
BLAST of mRNA_H-paniculata_contig4723.11743.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 2.740e-37
Identity = 90/228 (39.47%), Postives = 128/228 (56.14%), Query Frame = 1 
Query:    1 LTAKGFEQSHAEPCVFRKIMGGEMVAVIIIYVDDLLLISTKGSKIMDELPTDLRSDHKLKDLGDPRYHLGWHIIRDRQKRKLKIDQHLYARSMAERFGITKTSMLPATAGNNTMIKNDGPKTSEEAEEMPAF--PYREAVGALMWPATMTRPEIAYAVRTTGKFCENPGVEHK*AVVNILRYVQTTADLGITYGGQDCGVELLAYADSDYATSQESRHSVSGRAVLLG 678
            L   G+EQ  A+PCVFRKI+ G++V++I+IYVDD++ + ++     +EL T LR    +KDLG+  ++ G  I RD +     + Q  Y   + +RFGIT T+  PA           GPK  +E    P    P R+A+G LMWPAT TRP+IA A+    +    P +    A+V IL Y+  T DLGITY  +  G++L  Y D+ YA     R SV+G AV +G
Sbjct:  902 LVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEG--EELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNAEL-----GPKRDDE----PGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYV-RGSGLDLEVYVDASYADRDTGRRSVTGIAVTVG 1117
[Close]
BLAST of mRNA_H-paniculata_contig4723.11743.1 vs. uniprot
Match: H3G9E3_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G9E3_PHYRM)

HSP 1 Score: 145 bits (366), Expect = 7.630e-37
Identity = 83/225 (36.89%), Postives = 133/225 (59.11%), Query Frame = 1 
Query:    1 LTAKGFEQSHAEPCVFRKIMGGEMVAVIIIYVDDLLLISTKGSKIMDELPTDLRSDHKLKDLGDPRYHLGWHIIRDRQKRKLKIDQHLYARSMAERFGITKTSMLPATAGNNTMIKNDGPKTSEEAEEMPAFPYREAVGALMWPATMTRPEIAYAVRTTGKFCENPGVEHK*AVVNILRYVQTTADLGITYGGQDCGVELLAYADSDYATSQESRHSVSGRAVLL 675
            L  +GF +S A+PCV+ +    E  ++++IYVDDL+L S K  + ++ +   L+ +  +K+LG+ +Y LG  I R+R+ + + ++Q  Y + +AE+FG+ K   +   A  N+ +     K +EE   +  +PYRE VGALM+ AT TRP+IA AV    KFCE     H  A   IL+Y++TT D+GI + G   G E + YAD+++A   ++R S +G    L
Sbjct:  149 LEDQGFRRSDADPCVYVRRSTDEY-SIVVIYVDDLMLFS-KTKEHIESIKVALKKEFSIKELGELKYCLGIEIDRNREDKTILMNQRAYIKRLAEKFGVDKCKAVHTPADCNSKLV----KMTEEEAFVAKYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDMGIVFNGAIKG-EPIGYADANWAGDLDTRRSTTGYVFFL 366
[Close]
BLAST of mRNA_H-paniculata_contig4723.11743.1 vs. uniprot
Match: Q45W66_PHACR (Polyprotein n=1 Tax=Phanerochaete chrysosporium (strain RP-78 / ATCC MYA-4764 / FGSC 9002) TaxID=273507 RepID=Q45W66_PHACR)

HSP 1 Score: 147 bits (371), Expect = 1.760e-36
Identity = 85/227 (37.44%), Postives = 132/227 (58.15%), Query Frame = 1 
Query:   13 GFEQSHAEPCVFRKIMGGEMVAVIIIYVDDLLLISTKGSKIMDELPTDLRSDHKLKDLGDPRYHLGWHIIRDRQKRKLKIDQHLYARSMAERFGITKTSMLPATAGNNTMIKNDGPKTSEEAEEMPAFPYREAVGALMWPATMTRPEIAYAVRTTGKFCENPGVEHK*AVVNILRYVQTTADLGITYGG---QDCGVELLAYADSDYATSQESRHSVSGRAVLLGAA 684
            GF  S  +PCV+ +I  G     + ++VDD  L + K  +IMD+L  +L S  ++ DLG  R  LG+ +IR+R +R L + Q  Y R + +RF +  ++ +      NT ++    KT +     P FPYREAVG+LM+ A  TRP+I+YAV+T  +FCE P   H  A+  +LRY++ TA+ GI Y     Q   +E++ Y+D+D+  + + + S+SG   LLG A
Sbjct: 1042 GFRASSVDPCVYLRIDEGSPT-FLAVHVDDFSLFA-KTREIMDKLKGELSSRFEMTDLGPVRQILGYEVIRERDQRTLMLRQAAYIRKVLDRFNMADSNPVSVPMDPNTRLQ----KTPDAPP--PDFPYREAVGSLMYAAVGTRPDISYAVQTLSQFCERPSTAHWTALKRVLRYLKGTAEWGIIYKAPEAQTTPIEVVGYSDADWGANPDDQKSISGYVFLLGGA 1260
[Close]
BLAST of mRNA_H-paniculata_contig4723.11743.1 vs. uniprot
Match: H3H9V9_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9V9_PHYRM)

HSP 1 Score: 144 bits (364), Expect = 8.330e-36
Identity = 81/209 (38.76%), Postives = 128/209 (61.24%), Query Frame = 1 
Query:    1 LTAKGFEQSHAEPCVFRKIMGGEMVAVIIIYVDDLLLISTKGSKIMDELPTDLRSDHKLKDLGDPRYHLGWHIIRDRQKRKLKIDQHLYARSMAERFGITKTSMLPATAGNNTMIKNDGPKTSEEAEEMPAFPYREAVGALMWPATMTRPEIAYAVRTTGKFCENPGVEHK*AVVNILRYVQTTADLGITYGGQDCGVELLAYADSDYA 627
            L  +GF +S A+PCV+ +       ++II+YVDDL++ S   ++I  E+   L+ +  +K+LG+ +Y LG  I R+R  + + ++Q  Y + +AE+FG+ K   +   A +N+ +     K SE+ + +P +PYRE VGALM+ AT TRP+IA AV    KFCE     H  A   IL+Y++TT DLG+ + G   G EL+ YAD+++A
Sbjct:  483 LEGQGFHRSAADPCVYVR-RSDSKFSIIIVYVDDLMIFSRTKAEI-GEIKKALKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNSKLV----KPSEDEDFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCEWYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKG-ELIGYADANWA 684
[Close]
BLAST of mRNA_H-paniculata_contig4723.11743.1 vs. uniprot
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) n=1 Tax=Bryonia dioica TaxID=3652 RepID=E2GK51_BRYDI)

HSP 1 Score: 144 bits (363), Expect = 2.030e-35
Identity = 84/223 (37.67%), Postives = 131/223 (58.74%), Query Frame = 1 
Query:   13 GFEQSHAEPCVFRKIMGGEMVAVIIIYVDDLLLISTKGSKIMDELPTDLRSDHKLKDLGDPRYHLGWHIIRDRQKRKLKIDQHLYARSMAERFGI--TKTSMLPATAGNNTMIKNDGPKTSEEAEEMPAFPYREAVGALMWPATMTRPEIAYAVRTTGKFCENPGVEHK*AVVNILRYVQTTADLGITYGGQDCGVELLAYADSDYATSQESRHSVSGRAVLL 675
            GFEQ+  EPCV++KI+   +VA +I+YVDD+LLI      + D +   L +  ++KDLG+ +Y LG  I+R+R+ + L + Q  Y   +  R+ +  +K   LP   G + + K   PKT +E E+M   PY  AVG+LM+    TRP+I Y+V    ++  NPG +H  AV NIL+Y++ T +  + YG +D  + L  Y DSD+ + +++R S SG    L
Sbjct:  976 GFEQNVDEPCVYKKIVNS-VVAFLILYVDDILLIGNDVEYLTD-VKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNSKKGQLPFRHGIH-LSKEQCPKTPQEVEDMRNIPYSSAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTRNYMLVYGAKD--LILTGYTDSDFQSDKDARKSTSGSVFTL 1193
[Close]
BLAST of mRNA_H-paniculata_contig4723.11743.1 vs. uniprot
Match: A0A6H5JWY8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWY8_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.110e-35
Identity = 84/228 (36.84%), Postives = 127/228 (55.70%), Query Frame = 1 
Query:    1 LTAKGFEQSHAEPCVFRKIMGGEMVAVIIIYVDDLLLISTKGSKIMDELPTDLRSDHKLKDLGDPRYHLGWHIIRDRQKRKLKIDQHLYARSMAERFGITKTSMLPATAGNNTMIKNDGPKTSEEAEEMPAF--PYREAVGALMWPATMTRPEIAYAVRTTGKFCENPGVEHK*AVVNILRYVQTTADLGITYGGQDCGVELLAYADSDYATSQESRHSVSGRAVLLG 678
            L   G+EQ   +PCVFRK++ GE+V +I+IYVDD+L+ + +G +  +EL   L     +KDLG+  ++ G  I+ D +    K+ Q  Y  SM +RF +T T+  PA    +      GPK  +E    PA   P REA+G LMW   +TRP+IA  +    K  ++P      A+V I+ Y+  T D GITY  +  G++L  + D+ YA ++  R S +G AV +G
Sbjct:   30 LIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGER--EELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYVESMLKRFDVTTTAFTPAATDADL-----GPKRDDE----PAVDKPVREAIGCLMW-TKLTRPDIALPLNKLQKIAQSPTGRIWNALVRIMSYLNFTKDFGITYV-RGSGLDLSVFVDASYADNEVDRRSTTGLAVTVG 244
[Close]
BLAST of mRNA_H-paniculata_contig4723.11743.1 vs. uniprot
Match: A0A6H5KW89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW89_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.460e-34
Identity = 83/228 (36.40%), Postives = 125/228 (54.82%), Query Frame = 1 
Query:    1 LTAKGFEQSHAEPCVFRKIMGGEMVAVIIIYVDDLLLISTKGSKIMDELPTDLRSDHKLKDLGDPRYHLGWHIIRDRQKRKLKIDQHLYARSMAERFGITKTSMLPATAGNNTMIKNDGPKTSEEAEEMPAF--PYREAVGALMWPATMTRPEIAYAVRTTGKFCENPGVEHK*AVVNILRYVQTTADLGITYGGQDCGVELLAYADSDYATSQESRHSVSGRAVLLG 678
            L   G+EQ   +PCVFRK++ GE+V +I+IYVDD+L+ + +G +  +EL   L  +  +KDLG+  ++ G  I  D +    K+ Q  Y  SM +RF +T T+  PA    +      GPK  +E    PA   P REA+G LMW   +TRP+IA  +    K   +P      A+V I+ Y+  T D GITY  +  G++   + D+ YA ++  R S +G AV +G
Sbjct:   30 LIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGER--EELFASLNKEFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIDSMLQRFDVTTTAFTPAATDADL-----GPKRDDE----PAVDKPVREAIGCLMW-TKLTRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYLNFTKDFGITYV-RGSGLDRSVFVDASYADNEVDRRSTTGLAVTVG 244
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4723.11743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3GB17_PHYRM3.390e-3937.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H7M7_PHYRM3.150e-3837.78CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
A0A6H5L175_9PHAE2.130e-3739.47Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKS3_9PHAE2.740e-3739.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
H3G9E3_PHYRM7.630e-3736.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q45W66_PHACR1.760e-3637.44Polyprotein n=1 Tax=Phanerochaete chrysosporium (s... [more]
H3H9V9_PHYRM8.330e-3638.76CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
E2GK51_BRYDI2.030e-3537.67Gag/pol protein (Fragment) n=1 Tax=Bryonia dioica ... [more]
A0A6H5JWY8_9PHAE2.110e-3536.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KW89_9PHAE1.460e-3436.40Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4723contigH-paniculata_contig4723:17..804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue2.7e-18
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.8151
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QHW0@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size788
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4723.11743.1prot_H-paniculata_contig4723.11743.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4723 74..532 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930404.6584423-UTR-H-paniculata_contig4723:16..731622930404.6584423-UTR-H-paniculata_contig4723:16..73Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4723 17..73 +
1691481276.5629642-UTR-H-paniculata_contig4723:16..731691481276.5629642-UTR-H-paniculata_contig4723:16..73Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4723 17..73 +
1622930404.693844-UTR-H-paniculata_contig4723:532..8041622930404.693844-UTR-H-paniculata_contig4723:532..804Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4723 533..804 +
1691481276.5888145-UTR-H-paniculata_contig4723:532..8041691481276.5888145-UTR-H-paniculata_contig4723:532..804Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4723 533..804 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930404.677599-CDS-H-paniculata_contig4723:73..5321622930404.677599-CDS-H-paniculata_contig4723:73..532Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4723 74..532 +
1691481276.5786657-CDS-H-paniculata_contig4723:73..5321691481276.5786657-CDS-H-paniculata_contig4723:73..532Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4723 74..532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4723.11743.1

>prot_H-paniculata_contig4723.11743.1 ID=prot_H-paniculata_contig4723.11743.1|Name=mRNA_H-paniculata_contig4723.11743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
MGGEMVAVIIIYVDDLLLISTKGSKIMDELPTDLRSDHKLKDLGDPRYHL
GWHIIRDRQKRKLKIDQHLYARSMAERFGITKTSMLPATAGNNTMIKNDG
PKTSEEAEEMPAFPYREAVGALMWPATMTRPEIAYAVRTTGKFCENPGVE
HK*
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mRNA from alignment at H-paniculata_contig4723:17..804+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4723.11743.1 ID=mRNA_H-paniculata_contig4723.11743.1|Name=mRNA_H-paniculata_contig4723.11743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=788bp|location=Sequence derived from alignment at H-paniculata_contig4723:17..804+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCACGGCGAAAGGGTTCGAGCAATCGCACGCCGAGCCATGCGTGTTCCG
CAAGATCATGGGCGGGGAGATGGTCGCAGTGATCATCATATACGTGGACG
ACCTTCTTCTAATCAGTACCAAGGGATCTAAAATCATGGACGAGTTGCCG
ACGGACTTGCGATCGGATCACAAGCTCAAAGACTTGGGAGATCCAAGGTA
CCATTTAGGATGGCACATCATCCGCGATAGGCAGAAGAGGAAGCTCAAGA
TCGACCAGCACCTCTACGCTAGGTCCATGGCCGAGCGTTTCGGGATAACC
AAGACCAGCATGCTCCCGGCCACGGCGGGAAACAACACCATGATAAAAAA
CGACGGGCCAAAGACCTCAGAGGAAGCCGAGGAGATGCCGGCGTTCCCAT
ACAGGGAGGCAGTGGGGGCGCTCATGTGGCCTGCGACAATGACGCGACCC
GAAATCGCATACGCCGTACGCACTACGGGAAAGTTTTGTGAGAACCCAGG
GGTGGAGCACAAATGAGCTGTGGTGAATATTCTGCGGTACGTACAAACGA
CCGCGGACCTGGGAATAACCTACGGCGGACAGGACTGCGGGGTCGAATTG
TTGGCTTACGCTGACTCGGACTACGCGACGTCGCAGGAAAGCCGACACTC
GGTCTCCGGCAGAGCGGTACTGCTGGGGGCGGCGCGATCAGTTGGCACTC
GAGGACTCAGGAGGTGACGGCGGCGGGGAAAACAAAAGCGGAGTACGTCG
CGTTGGCGGAGACGGTCAACGAAGTACCGCTTCTGCGT
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Coding sequence (CDS) from alignment at H-paniculata_contig4723:17..804+

>mRNA_H-paniculata_contig4723.11743.1 ID=mRNA_H-paniculata_contig4723.11743.1|Name=mRNA_H-paniculata_contig4723.11743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig4723:17..804+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGGGGAGATGGTCGCAGTGATCATCATATACGTGGACGACCTTCT
TCTAATCAGTACCAAGGGATCTAAAATCATGGACGAGTTGCCGACGGACT
TGCGATCGGATCACAAGCTCAAAGACTTGGGAGATCCAAGGTACCATTTA
GGATGGCACATCATCCGCGATAGGCAGAAGAGGAAGCTCAAGATCGACCA
GCACCTCTACGCTAGGTCCATGGCCGAGCGTTTCGGGATAACCAAGACCA
GCATGCTCCCGGCCACGGCGGGAAACAACACCATGATAAAAAACGACGGG
CCAAAGACCTCAGAGGAAGCCGAGGAGATGCCGGCGTTCCCATACAGGGA
GGCAGTGGGGGCGCTCATGTGGCCTGCGACAATGACGCGACCCGAAATCG
CATACGCCGTACGCACTACGGGAAAGTTTTGTGAGAACCCAGGGGTGGAG
CACAAATGAATGGGCGGGGAGATGGTCGCAGTGATCATCATATACGTGGA
CGACCTTCTTCTAATCAGTACCAAGGGATCTAAAATCATGGACGAGTTGC
CGACGGACTTGCGATCGGATCACAAGCTCAAAGACTTGGGAGATCCAAGG
TACCATTTAGGATGGCACATCATCCGCGATAGGCAGAAGAGGAAGCTCAA
GATCGACCAGCACCTCTACGCTAGGTCCATGGCCGAGCGTTTCGGGATAA
CCAAGACCAGCATGCTCCCGGCCACGGCGGGAAACAACACCATGATAAAA
AACGACGGGCCAAAGACCTCAGAGGAAGCCGAGGAGATGCCGGCGTTCCC
ATACAGGGAGGCAGTGGGGGCGCTCATGTGGCCTGCGACAATGACGCGAC
CCGAAATCGCATACGCCGTACGCACTACGGGAAAGTTTTGTGAGAACCCA
GGGGTGGAGCACAAATGA
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