mRNA_H-paniculata_contig47125.11728.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig47125.11728.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 150 bits (379), Expect = 9.520e-41 Identity = 84/199 (42.21%), Postives = 121/199 (60.80%), Query Frame = 1
Query: 22 EEAEEMRAFPYRGAVGALMWAATMRRPDIAHVVRTTKTFYENPGMEHTRAVGKILQYVLRTADLGITYG-GKDCEVEMLACANSDYATCQDSQRSVSGGAVLLGGEAVRWHARTQEMTAAETIEAEYVALVEMVNEVLFLRQVQAFIIPTLEHYSVIIKEDNQGAAKITHNKHSSRRTRHINVKHHNVHDAVEAGKVDI 615
+E E P+R VG+LMW AT RPDIA+ VR + +P M H +A IL YV RT+ +GIT+ G + M ++DYA+ +RSVSGG V+ GG V W +RTQ+ T EAEYVA+ +++ EVLFLRQV F++P + + EDNQGA +I HN ++ ++HI+V+HH + + VE ++ I
Sbjct: 90 DENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISI 288
BLAST of mRNA_H-paniculata_contig47125.11728.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE) HSP 1 Score: 150 bits (380), Expect = 2.310e-40 Identity = 84/199 (42.21%), Postives = 121/199 (60.80%), Query Frame = 1
Query: 22 EEAEEMRAFPYRGAVGALMWAATMRRPDIAHVVRTTKTFYENPGMEHTRAVGKILQYVLRTADLGITYG-GKDCEVEMLACANSDYATCQDSQRSVSGGAVLLGGEAVRWHARTQEMTAAETIEAEYVALVEMVNEVLFLRQVQAFIIPTLEHYSVIIKEDNQGAAKITHNKHSSRRTRHINVKHHNVHDAVEAGKVDI 615
+E E P+R VG+LMW AT RPDIA+ VR + +P M H +A IL YV RT+ +GIT+ G + M ++DYA+ +RSVSGG V+ GG V W +RTQ+ T EAEYVA+ +++ EVLFLRQV F++P + + EDNQGA +I HN ++ ++HI+V+HH + + VE ++ I
Sbjct: 145 DENEASADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISI 343
BLAST of mRNA_H-paniculata_contig47125.11728.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE) HSP 1 Score: 150 bits (379), Expect = 1.070e-39 Identity = 84/199 (42.21%), Postives = 121/199 (60.80%), Query Frame = 1
Query: 22 EEAEEMRAFPYRGAVGALMWAATMRRPDIAHVVRTTKTFYENPGMEHTRAVGKILQYVLRTADLGITYG-GKDCEVEMLACANSDYATCQDSQRSVSGGAVLLGGEAVRWHARTQEMTAAETIEAEYVALVEMVNEVLFLRQVQAFIIPTLEHYSVIIKEDNQGAAKITHNKHSSRRTRHINVKHHNVHDAVEAGKVDI 615
+E E P+R VG+LMW AT RPDIA+ VR + +P M H +A IL YV RT+ +GIT+ G + M ++DYA+ +RSVSGG V+ GG V W +RTQ+ T EAEYVA+ +++ EVLFLRQV F++P + + EDNQGA +I HN ++ ++HI+V+HH + + VE ++ I
Sbjct: 207 DENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISI 405
BLAST of mRNA_H-paniculata_contig47125.11728.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE) HSP 1 Score: 145 bits (367), Expect = 3.180e-39 Identity = 84/206 (40.78%), Postives = 126/206 (61.17%), Query Frame = 1
Query: 7 GPKTSE--EAEEMRAFPYRGAVGALMWAATMRRPDIAHVVRTTKTFYENPGMEHTRAVGKILQYVLRTADLGITYG-GKDCEVEMLACANSDYATCQDSQRSVSGGAVLLGGEAVRWHARTQEMTAAETIEAEYVALVEMVNEVLFLRQVQAFIIPTLEHYSVIIKEDNQGAAKITHNKHSSRRTRHINVKHHNVHDAVEAGKVDI 615
G K SE + EE+ ++P+R +G+LMW AT RP+IA+ R + +P H RA IL YV+RT+DLGIT+G G + M A++DYA+ +RSVSGG V+ G + W +RTQ+ T EAEYV+L +++ EVLFLRQV F++P + + EDNQGA ++ N S+ ++H +V+HH + + V ++ I
Sbjct: 55 GLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPNIANAARAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHFDVRHHFIGELVGRKEISI 260
BLAST of mRNA_H-paniculata_contig47125.11728.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE) HSP 1 Score: 150 bits (378), Expect = 5.070e-38 Identity = 84/199 (42.21%), Postives = 121/199 (60.80%), Query Frame = 1
Query: 22 EEAEEMRAFPYRGAVGALMWAATMRRPDIAHVVRTTKTFYENPGMEHTRAVGKILQYVLRTADLGITYG-GKDCEVEMLACANSDYATCQDSQRSVSGGAVLLGGEAVRWHARTQEMTAAETIEAEYVALVEMVNEVLFLRQVQAFIIPTLEHYSVIIKEDNQGAAKITHNKHSSRRTRHINVKHHNVHDAVEAGKVDI 615
+E E P+R VG+LMW AT RPDIA+ VR + +P M H +A IL YV RT+ +GIT+ G + M ++DYA+ +RSVSGG V+ GG V W +RTQ+ T EAEYVA+ +++ EVLFLRQV F++P + + EDNQGA +I HN ++ ++HI+V+HH + + VE ++ I
Sbjct: 1241 DENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISI 1439
BLAST of mRNA_H-paniculata_contig47125.11728.1 vs. uniprot
Match: A0A6H5K8K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K2_9PHAE) HSP 1 Score: 142 bits (359), Expect = 7.350e-38 Identity = 80/199 (40.20%), Postives = 117/199 (58.79%), Query Frame = 1
Query: 22 EEAEEMRAFPYRGAVGALMWAATMRRPDIAHVVRTTKTFYENPGMEHTRAVGKILQYVLRTADLGITYG-GKDCEVEMLACANSDYATCQDSQRSVSGGAVLLGGEAVRWHARTQEMTAAETIEAEYVALVEMVNEVLFLRQVQAFIIPTLEHYSVIIKEDNQGAAKITHNKHSSRRTRHINVKHHNVHDAVEAGKVDI 615
+E E P+R VG++MW AT RPDIA+ VR + +P M H +A IL YV RT+ +GIT+ G + M ++DY +RSVSGG V+ GG V W +RTQ+ T EAEYVA+ +++ EVLFLRQV F++P + + EDNQGA ++ HN ++ ++HI+ +HH + VE ++ I
Sbjct: 62 DENEACADVPFRELVGSVMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYVRKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQVAHNPITNSNSKHIDERHHLIRKLVERKEISI 260
BLAST of mRNA_H-paniculata_contig47125.11728.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE) HSP 1 Score: 145 bits (365), Expect = 1.720e-37 Identity = 83/209 (39.71%), Postives = 127/209 (60.77%), Query Frame = 1
Query: 1 NDGPKTSE-EAEEMRA-FPYRGAVGALMWAATMRRPDIAHVVRTTKTFYENPGMEHTRAVGKILQYVLRTADLGITYGGKDCE-VEMLACANSDYATCQDSQRSVSGGAVLLGGEAVRWHARTQEMTAAETIEAEYVALVEMVNEVLFLRQVQAFIIPTLEHYSVIIKEDNQGAAKITHNKHSSRRTRHINVKHHNVHDAVEAGKVDIV 618
+ G K S+ +A+E+ FP+R VG+LMW AT RPDIA+ VR + +P + H A IL Y RT+ GI++ E + A++D+A+ +RSVSGG V GG AV W +RTQ+ T EAEYVAL ++V E+LFLRQ+ F++P + + + EDNQGA ++ N S+ ++HI+V+HH + + VE ++ ++
Sbjct: 222 SSGVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVI 430
BLAST of mRNA_H-paniculata_contig47125.11728.1 vs. uniprot
Match: A0A6H5JMV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV5_9PHAE) HSP 1 Score: 140 bits (352), Expect = 2.720e-37 Identity = 79/197 (40.10%), Postives = 115/197 (58.38%), Query Frame = 1
Query: 22 EEAEEMRAFPYRGAVGALMWAATMRRPDIAHVVRTTKTFYENPGMEHTRAVGKILQYVLRTADLGITYG-GKDCEVEMLACANSDYATCQDSQRSVSGGAVLLGGEAVRWHARTQEMTAAETIEAEYVALVEMVNEVLFLRQVQAFIIPTLEHYSVIIKEDNQGAAKITHNKHSSRRTRHINVKHHNVHDAVEAGKV 609
+E E P+R VG+LMW AT RPDIA+ VR + +P M H +A IL YV RT+ +GI + G + + ++DY + RSVSGG V+ GG V W +RTQ+ A T E +YVA+ ++ EVLFLRQV F++P + + EDNQGA +I HN ++ +HI+V+HH + + VE ++
Sbjct: 47 DENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGIAFERGVVTGMSVQVFVDADYTSKATEHRSVSGGRVICGGGCVTWFSRTQKCVALSTTETQYVAIANVLKEVLFLRQVWRFMLPDAGIPCIPVFEDNQGAIQIAHNPITNSNPKHIDVRHHFIRELVERKEI 243
BLAST of mRNA_H-paniculata_contig47125.11728.1 vs. uniprot
Match: A0A6H5KRB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRB4_9PHAE) HSP 1 Score: 141 bits (355), Expect = 3.380e-37 Identity = 82/209 (39.23%), Postives = 124/209 (59.33%), Query Frame = 1
Query: 1 NDGPKTSE-EAEEMRA-FPYRGAVGALMWAATMRRPDIAHVVRTTKTFYENPGMEHTRAVGKILQYVLRTADLGITYGGKDCE-VEMLACANSDYATCQDSQRSVSGGAVLLGGEAVRWHARTQEMTAAETIEAEYVALVEMVNEVLFLRQVQAFIIPTLEHYSVIIKEDNQGAAKITHNKHSSRRTRHINVKHHNVHDAVEAGKVDIV 618
+ G K S+ +A+E+ FP+R VG+LMW AT RPDIA+ VR + +P + H A IL Y RT+ GI++ E + A++D+A+ +RSVSGG V GG AV W +RTQ+ T EAEYVAL ++V E+LFLRQ+ F +P + + + ED QG ++ N S+ ++HINV+HH + + VE ++ ++
Sbjct: 80 SSGVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFTLPQVGMPCIPVFEDIQGVIQLAQNPISNSNSKHINVRHHFLRELVERKEISVI 288
BLAST of mRNA_H-paniculata_contig47125.11728.1 vs. uniprot
Match: A0A6H5L8D6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D6_9PHAE) HSP 1 Score: 143 bits (361), Expect = 3.840e-37 Identity = 84/209 (40.19%), Postives = 126/209 (60.29%), Query Frame = 1
Query: 1 NDGPKTSE-EAEEMRA-FPYRGAVGALMWAATMRRPDIAHVVRTTKTFYENPGMEHTRAVGKILQYVLRTADLGITYGGKDCE-VEMLACANSDYATCQDSQRSVSGGAVLLGGEAVRWHARTQEMTAAETIEAEYVALVEMVNEVLFLRQVQAFIIPTLEHYSVIIKEDNQGAAKITHNKHSSRRTRHINVKHHNVHDAVEAGKVDIV 618
+ G K S+ +A+E+ FP+ VG+LMW AT RPDIA+ VRT + +P + A IL Y RT+ GI++ E + + A++D+AT +RSVSGG V GG AV W +RTQ+ T EAEYVAL ++V E+LFLRQ F++P + + I EDNQGA ++ N S+ ++H++V+HH V + VE ++ ++
Sbjct: 189 SSGVKLSDFDADEVTTDFPFHELVGSLMWLATQTRPDIANAVRTVARYCASPKLVPWNAAMDILGYARRTSQFGISFQRGTVEGLSLQGYADADFATKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQFWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHVDVRHHLVRELVERKEISVI 397 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47125.11728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig47125.11728.1 >prot_H-paniculata_contig47125.11728.1 ID=prot_H-paniculata_contig47125.11728.1|Name=mRNA_H-paniculata_contig47125.11728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp NDGPKTSEEAEEMRAFPYRGAVGALMWAATMRRPDIAHVVRTTKTFYENPback to top mRNA from alignment at H-paniculata_contig47125:148..804+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig47125.11728.1 ID=mRNA_H-paniculata_contig47125.11728.1|Name=mRNA_H-paniculata_contig47125.11728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=657bp|location=Sequence derived from alignment at H-paniculata_contig47125:148..804+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig47125:148..804+ >mRNA_H-paniculata_contig47125.11728.1 ID=mRNA_H-paniculata_contig47125.11728.1|Name=mRNA_H-paniculata_contig47125.11728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig47125:148..804+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |