mRNA_H-paniculata_contig471.11722.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig471.11722.1
Unique NamemRNA_H-paniculata_contig471.11722.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig471.11722.1 vs. uniprot
Match: A0A836CLC6_9STRA (Two-component response regulator n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLC6_9STRA)

HSP 1 Score: 153 bits (386), Expect = 3.290e-37
Identity = 130/376 (34.57%), Postives = 168/376 (44.68%), Query Frame = 1 
Query:  472 APGTGGQYRLMLVDDEEALRKAVSEYLRQRGYSVTAHGSAQEGLFHLKEAVRGTIGYAWPDLIITDINMPMMDGYQFLAALRMAGGGVGAIPVVFLTARGLTADRIQGYRAGINAYLAKPFDPEELVSIVDSVLLNTMNAAEVAAAEAATTAYAEAALSSPVGHGNGNDYNNSLAARGSGRSEDAQPVTSVVDVGENGDVLGDVRRELGDIKALLLADRAQRRQSEGVTISGGDDEAGEGTNNPGVTTRAPKLLTSSDDRSSNRSPDPYSDQPLGSQSWSPSQLGTSADPGQDSATMGSAEKEDGGKESEVSPLSTLTRREVQVLDLLTEGHTNREIATLVGLGVRSIEKHVSKLLSKTGTSNRTELVRYSLRTNL 1599
            A G GGQY+L+LVDDE  L KAV+ YL Q+GY+V    + ++ L  L+     +     PD+II+DI MP MDGYQ L  LR +   + AIPV+FLTARG+T DRI GYRAG  AYL KPFDPEELVSI+D++++ + +A                                                    D+ E       +RREL DIK+LLLA                                                  P+S +  G                              G   +V     LT RE QVL+LL  G  NREIA  +   VR++EKHV+KLL KTGT+NRTELV+++L T L
Sbjct:   60 ADGGGGQYKLLLVDDEVPLLKAVAGYLTQKGYNVETKETGRDALAFLRGQDAASAAPP-PDVIISDITMPGMDGYQLLQQLR-SFPRLRAIPVIFLTARGMTQDRIAGYRAGAAAYLPKPFDPEELVSIIDNLIVKSQSATS--------------------------------------------------DIAE-------LRRELSDIKSLLLAGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGA--------------PFSQEQSGXXXXXXXXX-----------XXXXXXXXXXGAGWDVG----LTPREQQVLNLLCRGFMNREIAQEMDTSVRNVEKHVTKLLEKTGTANRTELVKFALVTGL 347
[Close]
BLAST of mRNA_H-paniculata_contig471.11722.1 vs. uniprot
Match: A0A1U7HQD6_9CHRO (DNA-binding response regulator n=6 Tax=Cyanobacteria TaxID=1117 RepID=A0A1U7HQD6_9CHRO)

HSP 1 Score: 148 bits (373), Expect = 8.510e-37
Identity = 119/370 (32.16%), Postives = 167/370 (45.14%), Query Frame = 1 
Query:  496 RLMLVDDEEALRKAVSEYLRQRGYSVTAHGSAQEGLFHLKEAVRGTIGYAWPDLIITDINMPMMDGYQFLAALRMAGGGVGAIPVVFLTARGLTADRIQGYRAGINAYLAKPFDPEELVSIVDSVLLNTMNAAEVAAAEAATTAYAEAALSSPVGHGNGNDYNNSLAARGSGRSEDAQPVTSVVDVGENGDVLGDVRRELGDIKALLLADRAQRRQSEGVTISGGDDEAGEGTNNPGVTTRAPKLLTSSDDRSSNRSPDPYSDQPLGSQSWSPSQLGTSADPGQDSATMGSAEKEDGGKESEVSPLSTLTRREVQVLDLLTEGHTNREIATLVGLGVRSIEKHVSKLLSKTGTSNRTELVRYSLRTNLTK 1605
            +L+LVDDE  LR+AV +YL++ G++V    +AQEG   L++          PDL+I+DI MP +DGYQFL  +R        +PVVFLTA+G+T DRIQGY+AG++AYL KPFDP+EL++IV++                                         L AR        +  T   ++GE  D+  D+  ++  IKALL        Q +G+T                 TT AP  +                                                              LT RE  VL+L+TEG  N+EIA  +   VR++EK+VS+L SKTGT++RTELVR++L   LTK
Sbjct:    4 QLLLVDDEPGLREAVKDYLQESGFTVQVASNAQEGWELLQQTT--------PDLVISDIMMPQVDGYQFLKQMR-DDPRFQTLPVVFLTAKGMTTDRIQGYQAGVDAYLPKPFDPDELIAIVEN-----------------------------------------LIAR--------RTATHSGELGETPDI-ADLANQIAQIKALLT-------QRQGIT-----------------TTPAPIKID-------------------------------------------------------------LTPREQSVLNLVTEGLMNKEIARRLQTSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGLTK 229
[Close]
BLAST of mRNA_H-paniculata_contig471.11722.1 vs. uniprot
Match: A0A1Q8Z5T5_9CYAN (DNA-binding response regulator n=1 Tax=Leptolyngbya sp. 'hensonii' TaxID=1922337 RepID=A0A1Q8Z5T5_9CYAN)

HSP 1 Score: 144 bits (363), Expect = 1.990e-35
Identity = 113/369 (30.62%), Postives = 166/369 (44.99%), Query Frame = 1 
Query:  496 RLMLVDDEEALRKAVSEYLRQRGYSVTAHGSAQEGLFHLKEAVRGTIGYAWPDLIITDINMPMMDGYQFLAALRMAGGGVGAIPVVFLTARGLTADRIQGYRAGINAYLAKPFDPEELVSIVDSVLLNTMNAAEVAAAEAATTAYAEAALSSPVGHGNGNDYNNSLAARGSGRSEDAQPVTSVVDVGENGDVLGDVRRELGDIKALLLADRAQRRQSEGVTISGGDDEAGEGTNNPGVTTRAPKLLTSSDDRSSNRSPDPYSDQPLGSQSWSPSQLGTSADPGQDSATMGSAEKEDGGKESEVSPLSTLTRREVQVLDLLTEGHTNREIATLVGLGVRSIEKHVSKLLSKTGTSNRTELVRYSLRTNLT 1602
            +L+LVDDE  LR+AV  YL   G++V A  +A +G   ++++         PDL+I+DI MP +DGY+FL  LR       A+PVVFLTARG+TADRIQGY AG++AYL KPFDP+ELV+IV ++L                                       LA+R +  +ED + +            + D+ R++ +I+ +L+       Q +G+T +  D +                                                                                LT RE  VL+L+T+G  N+EIA  +   VR++EK+VS+L SKTGT++RTELVR++L   LT
Sbjct:    4 QLLLVDDEPGLREAVQAYLEDSGFTVRAASNAHDGWELMQQST--------PDLVISDIMMPQVDGYEFLKQLR-EDPRYKALPVVFLTARGMTADRIQGYNAGVDAYLPKPFDPDELVAIVTNLLKQR------------------------------------LASRAT--NEDGEAID-----------IADMARQIAEIRGMLM-------QKQGITKTPTDIQI------------------------------------------------------------------------------DLTPREKSVLELVTKGLMNKEIARQLNTSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGLT 229
[Close]
BLAST of mRNA_H-paniculata_contig471.11722.1 vs. uniprot
Match: A0A1Z4NMI0_9CYAN (LuxR family two component transcriptional regulator n=1 Tax=Calothrix sp. NIES-3974 TaxID=2005462 RepID=A0A1Z4NMI0_9CYAN)

HSP 1 Score: 144 bits (362), Expect = 2.800e-35
Identity = 116/369 (31.44%), Postives = 164/369 (44.44%), Query Frame = 1 
Query:  496 RLMLVDDEEALRKAVSEYLRQRGYSVTAHGSAQEGLFHLKEAVRGTIGYAWPDLIITDINMPMMDGYQFLAALRMAGGGVGAIPVVFLTARGLTADRIQGYRAGINAYLAKPFDPEELVSIVDSVLLNTMNAAEVAAAEAATTAYAEAALSSPVGHGNGNDYNNSLAARGSGRSEDAQPVTSVVDVGENGDVLGDVRRELGDIKALLLADRAQRRQSEGVTISGGDDEAGEGTNNPGVTTRAPKLLTSSDDRSSNRSPDPYSDQPLGSQSWSPSQLGTSADPGQDSATMGSAEKEDGGKESEVSPLSTLTRREVQVLDLLTEGHTNREIATLVGLGVRSIEKHVSKLLSKTGTSNRTELVRYSLRTNLT 1602
            +L+LVDDE  LR+AV ++L++ G+ V    +A+EG   +++ +        PDL+I+DI MP +DGYQFL  LR       A+PVVFLTA+G+T DRIQGY+AG++AYL KPFDP+ELV+IV+++L                   A   LSS              AA G G + D                + ++ +++  IKALL    A  +     TI                                                                                      LT RE  VL+L+TEG  N+EIA  +   VR++EK+VS+L SKTGT++RTELVR++L   LT
Sbjct:    4 QLLLVDDEPGLREAVKDFLQESGFRVQVASNAREGWEWMQQNI--------PDLVISDIMMPQVDGYQFLKQLR-DDPRFQALPVVFLTAKGMTGDRIQGYQAGVDAYLPKPFDPDELVAIVENLL-------------------ARRNLSS-------------TAASGEGDTPD----------------IAELAKQIAQIKALLTQKNAIAQTPAPFTID-------------------------------------------------------------------------------------LTPREQSVLNLVTEGLMNKEIARRLDTSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGLT 230
[Close]
BLAST of mRNA_H-paniculata_contig471.11722.1 vs. uniprot
Match: A0A2T1EMT5_9CHRO (DNA-binding response regulator n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A2T1EMT5_9CHRO)

HSP 1 Score: 139 bits (349), Expect = 1.560e-33
Identity = 112/372 (30.11%), Postives = 161/372 (43.28%), Query Frame = 1 
Query:  496 RLMLVDDEEALRKAVSEYLRQRGYSVTAHGSAQEGLFHLKEAVRGTIGYAWPDLIITDINMPMMDGYQFLAALRMAGGGVGAIPVVFLTARGLTADRIQGYRAGINAYLAKPFDPEELVSIVDSVLLNTMNAAEVAAAEAATTAYAEAALSSPVGHGNGNDYNNSLAARGSGRSEDAQPVTSVVDVGENGDV--LGDVRRELGDIKALLLADRAQRRQSEGVTISGGDDEAGEGTNNPGVTTRAPKLLTSSDDRSSNRSPDPYSDQPLGSQSWSPSQLGTSADPGQDSATMGSAEKEDGGKESEVSPLSTLTRREVQVLDLLTEGHTNREIATLVGLGVRSIEKHVSKLLSKTGTSNRTELVRYSLRTNLTK 1605
            +L+LVDDE  LR+AV +YL + G+SV    +A+EG   +++          PDL+I+DI MP +DGYQFL  LR       A+PV+FLTA+G+T DRIQGY+A  +AYL+KPFDP+ELV+I++++L   +                                                    V    ENG++  L D+  ++  IKA+L        Q  G+                                   ++P P+                                               LT RE  VLDL+T G  N+EIA  +   VR++EK+VS+L SKTGT++RTELVR++L   L K
Sbjct:    5 QLLLVDDEPGLREAVKDYLTESGFSVQVASNAREGWELMQQTT--------PDLVISDIMMPQVDGYQFLKQLR-DDARFTALPVIFLTAKGMTGDRIQGYQARCDAYLSKPFDPDELVAIIENLLERRV----------------------------------------------------VAPTKENGEIPDLADLANQIAQIKAILT-------QKNGIV----------------------------------QTPMPFK--------------------------------------------IDLTPREQSVLDLVTTGLMNKEIARQLQTSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGLAK 230
[Close]
BLAST of mRNA_H-paniculata_contig471.11722.1 vs. uniprot
Match: A0A7C3KDV2_9CYAN (Response regulator transcription factor n=1 Tax=Oscillatoriales cyanobacterium SpSt-418 TaxID=2282169 RepID=A0A7C3KDV2_9CYAN)

HSP 1 Score: 138 bits (348), Expect = 2.370e-33
Identity = 110/368 (29.89%), Postives = 158/368 (42.93%), Query Frame = 1 
Query:  496 RLMLVDDEEALRKAVSEYLRQRGYSVTAHGSAQEGLFHLKEAVRGTIGYAWPDLIITDINMPMMDGYQFLAALRMAGGGVGAIPVVFLTARGLTADRIQGYRAGINAYLAKPFDPEELVSIVDSVLLNTMNAAEVAAAEAATTAYAEAALSSPVGHGNGNDYNNSLAARGSGRSEDAQPVTSVVDVGENGDVLGDVRRELGDIKALLLADRAQRRQSEGVTISGGDDEAGEGTNNPGVTTRAPKLLTSSDDRSSNRSPDPYSDQPLGSQSWSPSQLGTSADPGQDSATMGSAEKEDGGKESEVSPLSTLTRREVQVLDLLTEGHTNREIATLVGLGVRSIEKHVSKLLSKTGTSNRTELVRYSLRTNL 1599
            +L+LVDDE  LR+AV  YL   GY+V    +A++GL   ++ +        PDLIITDI MP +DGYQFL  LR        +PVVFLTARG+T+DRIQGY AG +AYL+KPFDP+ELV+IV ++L   +   E A+ E                      YN                             + D+ R++ +IKA+L    A  + +  + +                                                                                      LT RE  VL+L+ +G  N++IA+ +   VR++EK+VS+L +KTGT++RTELVR++L   L
Sbjct:    4 QLLLVDDEPGLREAVQAYLEDSGYTVDVASNARDGLDLARQKL--------PDLIITDIMMPQVDGYQFLKQLR-DDPQFKTLPVVFLTARGMTSDRIQGYNAGCDAYLSKPFDPDELVAIVQNLLEKQLALREAASDEG---------------------YN-----------------------------IADLARQIAEIKAILTQRGAFPQATNSLKLD-------------------------------------------------------------------------------------LTPREESVLELVVDGLMNKQIASRLDTSVRNVEKYVSRLFTKTGTTSRTELVRFALENGL 227
[Close]
BLAST of mRNA_H-paniculata_contig471.11722.1 vs. uniprot
Match: K9U006_CHRTP (Two component transcriptional regulator, LuxR family n=4 Tax=Chroococcidiopsis TaxID=54298 RepID=K9U006_CHRTP)

HSP 1 Score: 138 bits (347), Expect = 2.820e-33
Identity = 112/368 (30.43%), Postives = 161/368 (43.75%), Query Frame = 1 
Query:  496 RLMLVDDEEALRKAVSEYLRQRGYSVTAHGSAQEGLFHLKEAVRGTIGYAWPDLIITDINMPMMDGYQFLAALRMAGGGVGAIPVVFLTARGLTADRIQGYRAGINAYLAKPFDPEELVSIVDSVLLNTMNAAEVAAAEAATTAYAEAALSSPVGHGNGNDYNNSLAARGSGRSEDAQPVTSVVDVGENGDVLGDVRRELGDIKALLLADRAQRRQSEGVTISGGDDEAGEGTNNPGVTTRAPKLLTSSDDRSSNRSPDPYSDQPLGSQSWSPSQLGTSADPGQDSATMGSAEKEDGGKESEVSPLSTLTRREVQVLDLLTEGHTNREIATLVGLGVRSIEKHVSKLLSKTGTSNRTELVRYSLRTNL 1599
            RL+LVDDE  LR+AV +YL + G++V    +A+EG   L++          PDL+I+DI MP +DGYQFL  +R        +PVVFLTA+G+T DRIQGY +G++AY+ KPFDP+ELV+IV+++L                                                 D +PV+  +  GE  D+  ++  ++  IKA+L        Q   +                  TT AP  +                                                              LT RE  VL+L+TEG  N+EIA  +   VR++EK+VS+L SKTGT++RTELVR++L   L
Sbjct:    4 RLLLVDDEPGLREAVKDYLEESGFAVQVASNAREGWDLLQQNT--------PDLVISDIMMPQVDGYQFLKQMR-EDPRFKRLPVVFLTAKGMTTDRIQGYNSGVDAYIPKPFDPDELVAIVENLL-------------------------------------------------DRRPVSQPLAEGEAPDI-AELANQIAQIKAMLT-------QRSAIN-----------------TTPAPIKID-------------------------------------------------------------LTPREQSVLNLVTEGLMNKEIARRLQTSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 227
[Close]
BLAST of mRNA_H-paniculata_contig471.11722.1 vs. uniprot
Match: UPI001688CB37 (response regulator transcription factor n=1 Tax=Leptolyngbya sp. FACHB-261 TaxID=2692806 RepID=UPI001688CB37)

HSP 1 Score: 137 bits (345), Expect = 5.250e-33
Identity = 112/367 (30.52%), Postives = 157/367 (42.78%), Query Frame = 1 
Query:  499 LMLVDDEEALRKAVSEYLRQRGYSVTAHGSAQEGLFHLKEAVRGTIGYAWPDLIITDINMPMMDGYQFLAALRMAGGGVGAIPVVFLTARGLTADRIQGYRAGINAYLAKPFDPEELVSIVDSVLLNTMNAAEVAAAEAATTAYAEAALSSPVGHGNGNDYNNSLAARGSGRSEDAQPVTSVVDVGENGDVLGDVRRELGDIKALLLADRAQRRQSEGVTISGGDDEAGEGTNNPGVTTRAPKLLTSSDDRSSNRSPDPYSDQPLGSQSWSPSQLGTSADPGQDSATMGSAEKEDGGKESEVSPLSTLTRREVQVLDLLTEGHTNREIATLVGLGVRSIEKHVSKLLSKTGTSNRTELVRYSLRTNL 1599
            ++LVDDE  LR+AV  YL   G+SV    +A+EGL  L+++         PDL+I+DI MP +DGYQFL  +R       ++P VFLTARG+T+DRIQGY+AG + YL+KPFDP+ELV+IV++ L                                             GR+            GE+   + D+  ++ +IKALL                         T  PG+    P +                                                               LT RE  VL+L++EG  N+EIA  +   VR++EK+VS+L SKTGT++RTELVRY+L   L
Sbjct:    5 ILLVDDEPGLREAVQAYLEDSGFSVATASNAKEGLQLLEQSP--------PDLVISDIMMPQVDGYQFLRQVRDIPR-FRSLPFVFLTARGMTSDRIQGYQAGCDDYLSKPFDPDELVAIVENRL---------------------------------------------GRAAAVNETN-----GEDSPDIADLANQIAEIKALL-------------------------TQKPGIVQTPPPIRVD------------------------------------------------------------LTPREQSVLNLVSEGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRYALEHGL 227
[Close]
BLAST of mRNA_H-paniculata_contig471.11722.1 vs. uniprot
Match: UPI002021BFBC (response regulator transcription factor n=1 Tax=Chroococcidiopsis sp. CCMEE 29 TaxID=155894 RepID=UPI002021BFBC)

HSP 1 Score: 137 bits (344), Expect = 7.560e-33
Identity = 113/370 (30.54%), Postives = 159/370 (42.97%), Query Frame = 1 
Query:  496 RLMLVDDEEALRKAVSEYLRQRGYSVTAHGSAQEGLFHLKEAVRGTIGYAWPDLIITDINMPMMDGYQFLAALRMAGGGVGAIPVVFLTARGLTADRIQGYRAGINAYLAKPFDPEELVSIVDSVLLNTMNAAEVAAAEAATTAYAEAALSSPVGHGNGNDYNNSLAARGSGRSEDAQPVTSVVDVGENGDVLGDVRRELGDIKALLLADRAQRRQSEGVTISGGDDEAGEGTNNPGVTTRAPKLLTSSDDRSSNRSPDPYSDQPLGSQSWSPSQLGTSADPGQDSATMGSAEKEDGGKESEVSPLSTLTRREVQVLDLLTEGHTNREIATLVGLGVRSIEKHVSKLLSKTGTSNRTELVRYSLRTNLTK 1605
            +L+LVDDE  LR+AV +YL++ G++V    +A +G   +++          PDL+I+DI MP +DGYQFL  LR        +PVVFLTA+G+T DRIQGY+AG++AYL KPFDP+ELV+IV+++L             AAT A  E+                                      GE  D+   +  ++  IKALL    A  +    + I                                                                                      LT RE  VL+L+TEG  N+EIA  +   VR++EK+VS+L SKTGT++RTELVR++L   L K
Sbjct:    4 QLLLVDDEPGLREAVKDYLQESGFTVQVASNAHDGWELVQQNT--------PDLVISDIMMPQVDGYQFLKQLR-EDPRFKTLPVVFLTAKGMTTDRIQGYQAGVDAYLPKPFDPDELVAIVENILERRA---------AATQATDES--------------------------------------GETPDIAA-LANQIAQIKALLTQKNALVQTPSPIKID-------------------------------------------------------------------------------------LTPREQSVLNLVTEGLMNKEIARRLQTSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGLAK 231
[Close]
BLAST of mRNA_H-paniculata_contig471.11722.1 vs. uniprot
Match: A0A8J7DMW0_9CYAN (Response regulator transcription factor n=1 Tax=Romeria aff. gracilis LEGE 07310 TaxID=915328 RepID=A0A8J7DMW0_9CYAN)

HSP 1 Score: 137 bits (344), Expect = 7.980e-33
Identity = 114/369 (30.89%), Postives = 160/369 (43.36%), Query Frame = 1 
Query:  496 RLMLVDDEEALRKAVSEYLRQRGYSVTAHGSAQEGLFHLKEAVRGTIGYAWPDLIITDINMPMMDGYQFLAALRMAGGGVGAIPVVFLTARGLTADRIQGYRAGINAYLAKPFDPEELVSIVDSVLLNTMNAAEVAAAEAATTAYAEAALSSPVGHGNGNDYNNSLAARGSGRSEDAQPVTSVVDVGENGDVLGDVRRELGDIKALLLADRAQRRQSEGVTISGGDDEAGEGTNNPGVTTRAPKLLTSSDDRSSNRSPDPYSDQPLGSQSWSPSQLGTSADPGQDSATMGSAEKEDGGKESEVSPLST-LTRREVQVLDLLTEGHTNREIATLVGLGVRSIEKHVSKLLSKTGTSNRTELVRYSLRTNL 1599
            +++LVDDE  LR+AV  YL   G++V    +A EG   L++A         PD++I+DI MP +DGYQFL  +R       A+PV+FLTARG+T+DRIQGY+AG +AYL KPFDPEELV+IV S +                                          R + +S D +    +  +           R++ +IKALL                                T+   L+ S+                                                     VSP+    T RE  VLDL++EG  N+EIA+ +G  VR++EK+VS+L  KTGT++RTELVRY+L   L
Sbjct:    7 KVLLVDDEPGLREAVQAYLEDSGFTVQVASNATEGWELLQQAT--------PDVVISDIMMPQVDGYQFLKQMR-EDVRFQALPVIFLTARGMTSDRIQGYQAGADAYLPKPFDPEELVAIVTSQI-----------------------------------------ERRAAQSPDPETAPDIATMA----------RQIEEIKALL--------------------------------TQRGSLIKSA-----------------------------------------------------VSPIKIDFTPREQDVLDLVSEGLMNKEIASRLGTTVRNVEKYVSRLFGKTGTNSRTELVRYALEHGL 230
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig471.11722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLC6_9STRA3.290e-3734.57Two-component response regulator n=1 Tax=Tribonema... [more]
A0A1U7HQD6_9CHRO8.510e-3732.16DNA-binding response regulator n=6 Tax=Cyanobacter... [more]
A0A1Q8Z5T5_9CYAN1.990e-3530.62DNA-binding response regulator n=1 Tax=Leptolyngby... [more]
A0A1Z4NMI0_9CYAN2.800e-3531.44LuxR family two component transcriptional regulato... [more]
A0A2T1EMT5_9CHRO1.560e-3330.11DNA-binding response regulator n=2 Tax=Cyanobacter... [more]
A0A7C3KDV2_9CYAN2.370e-3329.89Response regulator transcription factor n=1 Tax=Os... [more]
K9U006_CHRTP2.820e-3330.43Two component transcriptional regulator, LuxR fami... [more]
UPI001688CB375.250e-3330.52response regulator transcription factor n=1 Tax=Le... [more]
UPI002021BFBC7.560e-3330.54response regulator transcription factor n=1 Tax=Ch... [more]
A0A8J7DMW0_9CYAN7.980e-3330.89Response regulator transcription factor n=1 Tax=Ro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig471contigH-paniculata_contig471:12935..24985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score151.4
Seed ortholog evalue1.2e-33
Seed eggNOG ortholog1173026.Glo7428_0005
Preferred nameycf29
KEGG koko:K02485,ko:K07684
KEGG Pathwayko02020,map02020
KEGG ModuleM00471
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
EggNOG OGs1G1TZ@1117,COG2197@1,COG2197@2
COG Functional cat.K
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02022
Exons6
Model size2341
Cds size1551
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig471.11722.1prot_H-paniculata_contig471.11722.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig471 12998..24258 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930401.7683916-UTR-H-paniculata_contig471:12934..129971622930401.7683916-UTR-H-paniculata_contig471:12934..12997Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig471 12935..12997 +
1691481275.006532-UTR-H-paniculata_contig471:12934..129971691481275.006532-UTR-H-paniculata_contig471:12934..12997Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig471 12935..12997 +
1622930401.8664486-UTR-H-paniculata_contig471:24258..249851622930401.8664486-UTR-H-paniculata_contig471:24258..24985Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig471 24259..24985 +
1691481275.077696-UTR-H-paniculata_contig471:24258..249851691481275.077696-UTR-H-paniculata_contig471:24258..24985Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig471 24259..24985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930401.781635-CDS-H-paniculata_contig471:12997..133261622930401.781635-CDS-H-paniculata_contig471:12997..13326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig471 12998..13326 +
1691481275.0203857-CDS-H-paniculata_contig471:12997..133261691481275.0203857-CDS-H-paniculata_contig471:12997..13326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig471 12998..13326 +
1622930401.7985237-CDS-H-paniculata_contig471:13588..137541622930401.7985237-CDS-H-paniculata_contig471:13588..13754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig471 13589..13754 +
1691481275.0317-CDS-H-paniculata_contig471:13588..137541691481275.0317-CDS-H-paniculata_contig471:13588..13754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig471 13589..13754 +
1622930401.8109446-CDS-H-paniculata_contig471:20569..208031622930401.8109446-CDS-H-paniculata_contig471:20569..20803Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig471 20570..20803 +
1691481275.0406904-CDS-H-paniculata_contig471:20569..208031691481275.0406904-CDS-H-paniculata_contig471:20569..20803Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig471 20570..20803 +
1622930401.8232713-CDS-H-paniculata_contig471:22206..225021622930401.8232713-CDS-H-paniculata_contig471:22206..22502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig471 22207..22502 +
1691481275.049493-CDS-H-paniculata_contig471:22206..225021691481275.049493-CDS-H-paniculata_contig471:22206..22502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig471 22207..22502 +
1622930401.8400147-CDS-H-paniculata_contig471:23023..234101622930401.8400147-CDS-H-paniculata_contig471:23023..23410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig471 23024..23410 +
1691481275.0614796-CDS-H-paniculata_contig471:23023..234101691481275.0614796-CDS-H-paniculata_contig471:23023..23410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig471 23024..23410 +
1622930401.8545063-CDS-H-paniculata_contig471:24119..242581622930401.8545063-CDS-H-paniculata_contig471:24119..24258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig471 24120..24258 +
1691481275.0699317-CDS-H-paniculata_contig471:24119..242581691481275.0699317-CDS-H-paniculata_contig471:24119..24258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig471 24120..24258 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig471.11722.1

>prot_H-paniculata_contig471.11722.1 ID=prot_H-paniculata_contig471.11722.1|Name=mRNA_H-paniculata_contig471.11722.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=517bp
MSRLRRQCVVVNVALTCCLCYFLVSLTALATAVSRQHRLFEFHLLPAADS
AFCLPAGAACRRTWCEHSRDPRSVADANTRYSRPSVISRQVMGRRWVRRE
YSAGVVRCPRWPVSTPSVLGSTAEGGDKALSEGADLAPGTGGQYRLMLVD
DEEALRKAVSEYLRQRGYSVTAHGSAQEGLFHLKEAVRGTIGYAWPDLII
TDINMPMMDGYQFLAALRMAGGGVGAIPVVFLTARGLTADRIQGYRAGIN
AYLAKPFDPEELVSIVDSVLLNTMNAAEVAAAEAATTAYAEAALSSPVGH
GNGNDYNNSLAARGSGRSEDAQPVTSVVDVGENGDVLGDVRRELGDIKAL
LLADRAQRRQSEGVTISGGDDEAGEGTNNPGVTTRAPKLLTSSDDRSSNR
SPDPYSDQPLGSQSWSPSQLGTSADPGQDSATMGSAEKEDGGKESEVSPL
STLTRREVQVLDLLTEGHTNREIATLVGLGVRSIEKHVSKLLSKTGTSNR
TELVRYSLRTNLTKLK*
back to top

mRNA from alignment at H-paniculata_contig471:12935..24985+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig471.11722.1 ID=mRNA_H-paniculata_contig471.11722.1|Name=mRNA_H-paniculata_contig471.11722.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12051bp|location=Sequence derived from alignment at H-paniculata_contig471:12935..24985+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGATCCCTAAAACAGTGCGCAACCGTCCGTCAGAGGAGGGGTGTCCAGCG
TTTCGATTACGGCATGTCACGCCTCAGGCGACAGTGTGTCGTGGTTAATG
TTGCCCTTACTTGTTGTCTTTGCTATTTTCTCGTAAGTTTGACAGCCCTC
GCGACAGCTGTCAGTAGACAGCACCGTCTTTTTGAATTTCATTTATTACC
CGCAGCCGACTCAGCTTTCTGTTTACCAGCTGGAGCTGCTTGTCGGCGAA
CATGGTGTGAACACTCTCGAGATCCTCGGAGTGTTGCTGATGCTAACACG
CGTTATTCACGACCGAGTGTCATCAGTAGGCAGGTAATGGGCAGACGGTG
GGTGAGAAGGGAATACTCTGCGGGCGTGGTTAGATGTCCCAGGTGAGCTG
TGTATCGCGCAGCGAGGGTACCGTCATGTGGAATCAGTTCAAATGTTCAA
AATCGTCCTTCTTACTACAAAACCTATAGACAGCACAGTATAGTACAGTC
ACTGTACAAAACTCTACAATGGAATTGTTGAATGCTGTCGGGCACTACAG
TAGTGTATAGTGACCCGCGGGAGCATATAGCATACCGCCGCCTAGCCCTG
CCTGCGAACGTGCAACGGCAAGCCCATTTGTTGCAAATCCTTCGTGTACT
GCAGATGGCCGGTATCAACGCCGTCGGTATTGGGATCGACGGCGGAAGGA
GGCGACAAGGCGCTGTCAGAAGGTGCAGACTTAGCCCCTGGGACCGGCGG
TCAGTATCGACTCATGCTGGTAGACGACGAGGAGGCCCTACGTAAAGCAG
TCTCGGAATATCTCCGGCAGGTAAACGCCTACTGTTATGTACAACAACTG
CACGGTAATTCGCCCAACCTCGTGCACGCGCCCAAGTTCACCAGGGTTCC
GCAACCCGATTTCTGCTGAGTCCTTTCGACAACAGAACCAAGTCACCCAT
ATCCTCCGCAAAGCTGGTTGTATTTGGTTCGTGTTTCGGGATATAGTCAG
ATAACGGTAACATGTACTCTAAAATACTCTCCCCCAAAGAGCACGACGTC
CTGAAAGCTGGTAGTGCACTTTGCTGATCGTGGACTTCTAGTCCTGTTGG
TGGTCGCACTCTTGGGACTTTGCTCCTGATCTGGCCCTAAGTGTTGAACT
CAGTATGCGATAATATCACCGCTTCGACGCACTGAAGTGATCAAGCACCC
AACACATCCACCGTTGGAATATAACGGGGGTACTCTTGGTAAAATTACCT
AACCAACAAATATTTAGAAAACGGCAGATAGCAAGAACAACCTCCAGTAA
AGTCATGCCCGATGAGAAACATTCATCGGTATTCTTCTTTTCTAAATACT
GCGTGATTGCCGAGTTATGGGCACGGTAATTTCCCATGGAAATCAACCTT
CACTTTACTGCGGTAAATTCACGCCCACGGCAATTCACACAAAGCACGTT
AGTCACTTGGACTTGAGAAATATACAGCCGCGGTTTTTTCCTGCAGATCG
TCTCTTTGTCGTGGTACTTTCGAAAATACAACATTCTCGACTATACTCTT
GTTGGGCGCATTTCAACAATCCTCAACGGGATTCGATAGTTTTACCCAGG
GGACTCCTGGAATATAACAAAACAATCCGCCGAAAACATCCATCACATAG
TACCGGCCATGACCTTCTCAGATCCAATCCATTGAGCGGTGTTACACCGC
CATCCCAAAACCCAGCCTGGTTGCCGACGTGAACATGATTGAGCAAGCAT
GGATACTATGACAAAAATCAGTTCCAGCGGCATATCCTACGCCCTCATTG
AAACTCCAGACGAAAACGCGACTGGCCAAGCGCGATAGCATACTTTGCAT
AAAATCTACGCAATAACCACCCTAAGAAGCAATTCGCATCCTCAAGAAAC
GTCGCTCAAGTTCACCCATCCTGACTAGCAGGCCCCGCCTGACAAGCAAA
CCCCCGTCAGCAACACATCACATTGCATTTCGGTCTTCTACCCCATCGAC
GGTGCAATGGAAAAAATGGAAAAACAACGCCTACGAAAATCACTTGCTTG
ATTTTACAACATCACAGGCTCCCACACCGTCAGTCAACGTCAATAATAAA
AAACACCCCTGACCCAGCAATTCAAAGTCGCGGGCGAAGAAACTGTAAGT
AAACACCATCATCGATAAAAATCAATCCTAGCCTAGTTACCCTCGCTTAA
ACAGAGCAGCTCAGTCTCATCGTAACATAGCGCTATCATTGAAAAAAATG
CCAACAGACACAAGTTAGCACATGTAACCTGTCCTCGAAGAAACGTACAA
CGTTTCATCTTCGAACCGTTGTCAATAAACGATCAATATTCCGCAAACCA
AATACAATCTTCCACCAGCGGCGCATTTCGAACGTTTCACTTTTTCTGAC
ACGGTAGACCCTGGTTCCATTCGGCATAATTCAACTCCCCGGAAGCTGTC
ACTCGAAATTTTCAGACGGTTAGCCATCGAGCATCACGGTATGTTGCTGC
CCCCTGAACTCAAAATTTCCTCATGGAGCAATACGTCAGCATCGTATTCA
AACTGACATCCTTCCAATGTATCCGGCATGGCAATTCTCTGCTACATCAG
AAAATCGTCCACGCACAACCGCATATTCACAAGGATTCCTATGCAACAAA
CCGCACAATTTCTCACTATCCCCAAATGACTCTTGCTAATACTGAAAAAA
CAGCCGCCGCGAAATGCCTGGCCTGCCCCGCTTGCATAGGCAGCTCTGAC
GGATCGACTGCTCCTCCCACAAAACTCAGCTCTTAGAAGTCACCCTTTCC
TCCTCCGCGCCGCTCAATTCGTCTGCATCTCCTCAAAATTATGTCCAATC
TTCCGCACAGACGGGAAATTTAATTGGCCCAATTCGCCCTTAACAGCGAC
CACTTCCGTAAAGGGGTCGTCATGCCGGGCTTCAGTTTCCGCTCCCGGCA
CCGAACCTTCACCTGTCATGCTACCGTTACGGCCCTTGTTACTAATAGCT
CTCAACTTTACCGAAACTCCACCTTCCTCATCATAACTTCCATCGCCACC
CACGGACTTGACCGCATTTACCGTCCCCGCAAGCCCCATCGCGTTCACTT
CCGCCGCGGGCTCTACCGTGCTAGCTGCCGCTTCGGTCTCCACCGCGATA
TTCTCCGCCGCGCGCCTGCCAGCATCCCCGCCAACAGTGTATCTCTTCCA
CGATCACTCCTGTTCTCGATAGGTAACGTGTGCGCTTTTTCGTTCGCTGC
TCGCTCCTGCTGCTCTGTGGGCGCCACGGTGGGCTCACTGCCGACATCAT
CAGTGAAGTTCCGCCCATGCCCGACCCGCATCGCCGCGAATTGCCGCTCC
ACCGCCTGGCCGCTGCCGTACCTTCGCTTCTTGTGGCCGCATTTTCCGCA
GGTCCGGCACTTCCACCGAAACCGCTCTTGGAAGGGCGAGCATTTTCACC
CACAATAGCTGCCCGACTTCCACCGTCCTGGTATTTCCCAGCCGCATCAA
CTTCTAATGCCAAGTACTCCTTCATCACCTTGTCTCTGGGGGTCATGGAC
TCGTTACAGCCTGGGAATGTGCATATCGCGCCGCCCGTCGCTTCCCTTAG
ATGCCAGCGCCAGGTGTAATCGGAGCGTCTGCAGTTCCAGATCCAACAAC
CGTCCTTCGGTGCCCACTGCGTCCATGCTGTCTGTAGAGAGCCGCGTGAC
TTCCTCCATCGGCCCCTGCCTCAGTAATTGGGGATAACTACTTTCAGATA
ATACGGTTACCCCAGACCCTGAGCCCACCAGCACCTTGACATTCATGTCC
CCCGCTACTCCAGCAGCTCCAAACGCCCGTAACGGATGGCTATCGAGCAG
CACCGCGTGTGGCGCACCACCGCGTGTGGCGCACCACCGCACCTAGCCGA
TTCGCCTCCGCTGTCATCGCCGCTGTCGTTTCTGGACAATTCTTGCGCCC
GTCGGGTTCTGGATTCTCATACGTGTAGTCTTAGTGTGGCGGTGGCGGTG
TCCCCTCCTCATGTTGTTAACCCGCAGTCTCCTTGCCAGAAGAAACGGAT
GTCATAGCGCGCGCGTCTCAGCCACCTGCCTCTTGCTCATACCGACAAGG
ACGATGTCATCCTCCTTCTCTTCGCCGGTGAGGACGGCTTTCGTCCCGCT
GACACCACGCTCACTGTTATCTGTCTTGGCGCCTAGCTGACTCCTTGTGC
ATTGGGCCACCGCTACACCGCCATCGTTCACAGGACGTGATTGTTTACTG
CTAACTGCCGGATCCTTCGAATTCTCCGCCTTGCCGGGTGCTACTGCCGA
AGGGTTCTCCTCGTGCAGCAGATGCTTCCTTGCCACCACCCGGACCGCTC
GCGCAGTCTGCCGCTCTGTATCCTTGTTCCTGCATTGAAAGTGTTCCCCA
TAAAACGCGGCACCGTCCGACGTGCTTCCCGCGTCCTCCTGTCGGTCTTT
GCTAGCCCTCGGCGAGAACGTCTTCGTGCGTACCTTCTTCCTGTATTTTA
TCATTCTTGACCATCGTCGCATCTGCCTACGGCGTTCCTCCACGATCTTT
TTGCAGATGCCCTTGGATTCGATGGCCTGTAACAGTGCTTGAGGGTCGTT
CAGAATACCTCGCGTCTTGGCCAAGGCTTCTACCCTCCGCTGGTATGCCT
TAGTCGATAACCCCGCCAGCATGGCCTCGACAACAACACCTCCTATCCCC
GGTTTCCACTTGGCGTACACATCATGGTTGCCCAAGTATGTGAACACGCT
ACGTAGCACCTTCGCGAGCCAGACATCAAACTGCAGTTTAGCATCCATAC
GCAAAACCTCTGGGATGCCGCATGCCGTTGTAGAAGCTTATCTCATCAAT
CTCTTCGTCTAGTTGTCTTCCCCGAAACTGTCTGTGCGGTCTCATCTCTT
GAACATACGAATCAACGCCCTCCCTCAAGGAGGAAACGCTGTCTTCTACG
CCATCACCATTGGAATGCTCTATTTGTTTTTTGGTTCCTGTCTTAGGAGC
TCAAGAACGCCCGCACGTCTGTAATCGTCACTCTAATTTCTGGAGGTGCG
GTGGCTGACGCCCTACGCTTGTTACCCATAACTTGCGGGGCTCTTCTCCA
CAGGAATCTGATTCTTGGTCTTGCTTTGCCTTCGCTTGGTCCGCCATGTG
TCGATCCTCTTTTCGAAAAAACGACTTTCTTGATGGTGCTGAACCCCACG
TACGCACCCCTTGAAGCACTGAGCCTTCTCGAACACTATCTCGAAAAATG
CAAACCGGCAGCTTGCGGAAAAATTATTTTGGCACATACTGACTGAACTT
GTAGTCCCCGTGGCCGCGCTTTCGAGGACTTCCCTCCTGACCAGATCCGA
AGTACTTTACCCAGTTTGCGTCAATACCACCGTTTTCACTCATGGAAATA
ATCAAGCACTTCCAATACACTCGCCGGTGGAATATAACGAAACCACTCGC
CGAGACGATCTGTCACTAGCCAGGATCTTCTCAAACCAATTAGCACCCCC
CGTGTTCTTCTCAGACCCAATTCGCTGGATGGTGTTATAGCACCATACGA
GCCAGAACTTACCTTTTGCGACCGTGATATGAAATTGCAAAGTTAAAAAT
GGTGAAAAGTCATCAGTACCTGCAGCAAGCTGTGTGTATCGCTGAAGAAA
GGTCGTATTGTCAATACTAAGAGGCGCGTGCATCAGTCACAAGTCAGTAA
TATATGGATGTGTCACAGTACAGTCAATATTATATCTCTGTTCGCTAACT
TCTTCTCGAATATACTCGGCAGACAGATACATGAGAGGAGAGTCCCGTAA
TTGGCAGCATTTGTGCATTGAGCGCCGTTTGACAGACGGGACAGAGCATA
CCATGAGCAGCGCCTGTGTCCTAAACACATGAAACACGGTGTTAAGTCAA
CACCATCTCCACCTTGAGAAGAAAAGAAAGGAACACCCTTCCCTCTGCAT
TCCAATGTAATTATGATAGACCGTGGACACATTCTCAGGCAGCACGGTAG
TGTTCTCTAGTATAGAAAAGCGAAAGTTCAGTTGTGCATATGTCAAGGGT
TGTCCAGTTGTGTATTGGGACCACTAGTACTATATTTAGAGTCGCAAGCA
CCAATACCAACATATTTCCATGCATGCTGTTGTAGCCATTATCCACTGAA
ATGTACACATGTTGTAGTTATTACTCAATAATATTACACATGTTCCTGCC
ATAACACAGCTATCATATGGAAAAAAAAGAACAATACAACACATTAACAC
AAGCGACACCGCAACAGGTTTTCACAGGTACAGAAGCGAGCCAGAGCCAT
GGTGGCAGTTGGTATTTTAGTATCTCGAGAGTACCTTTTTCTCTTTTCTT
GGCAAAAATTGAAACTGGCGCGGGCAAGATGTTATGCTGCTGCGGTGGCC
ATTATTCAGCTCGATTTTGAATTGAGATAAGGCCGAAACGAGTAATTTTA
TGCGGTGCCTCCGGCAAGCCCCCCTTACCATCCAAGGGCGGGTTGGCTCG
TGCTAAAGTGTTTGCCTGGCGCTTCGCGCGGCTGTCTCGCTTCCCTTGCA
CTAATACGTCACCGATATAATGGTCATGTACTAAAACTCTAGAACGTTAG
TGGATTCACGAATTTCCACTATAGTCGAGGGCAGAAATGCTACCAATACA
CAGACCTACAGTGATTCGTCGTCGATCTTAGCCAGCACTAGACAACGCAG
AGGAGGTGACTGTGCTACCTCGATCACGTCCGACTGTTGCCTAGTTCGCG
ACGGCACGGGCTGTGATGGTGGGACTGTGAGCGGAAAGTGGCGGCTGGAA
ATGTGCGCTTCTTGAAAAAAACCGGCCTCGCCTGTCGGCTGGCCGACGTC
CCAGCGCTCTCGCAAGCGTTGCAGTTCGCTTAAAAGTTGCAGTCTGTGCC
ACGCAGGGCATAGTCGATTGGTCTCGCGACGGTTGCAAAGTGCGATAGCA
CGTTACCGCCAGTATTTCCTCGGGCACGGTTCACTCGCGCTCGCCCACGG
CAGCGTGGGTTGGAAATGACAGGGGTATGGTGCATTCGAAAAAAAAGCTG
TGGAGAGATAGTCCATACTTATAGCAAAAAATGTTGGATTTCGTTGTGAA
AATTCCGTGCAGACCGCAGACACAACGAACGCAATTTTTTCGCCCCTGTT
GCTACTTATGTCAGGATGAGACGCACCCCGATGTGGGAGCGTGTCACTGA
GTGTATCGCAAGAACAGCCATGTCACATGTCTCATATTGCAAATACGTGC
AGCTTCCTCTCCCCTTCAACTTGTGAAATTTGTGGGATTGTACTCGTATT
TGAGCCACCTACCTGTCCATCGATGGTGCTGGACGCGGACAGTACTCATA
TGGCACAGTGCTGGATGTGAACGGCCCTTTCATGGTATCGTTCTAGGGAT
TCACAGGACGGTACTGTATGGCAACTAAAGTGTACAGTACCAACACTCTT
TTACGCAAAACTCGCGAAGTCAGATTAAAGCGTACGGTTCATGGTAACGG
GAATGGGAAAGCGAGTTTGCGCGGAACCTTACCGAGGACAAGTACCATAG
TTTTACCGCAGGAATTGTATCGAGGTAAATCCTGATCAATTTCCTTACTC
ACCACCCTCCAACCGTCTCCATTCCCTCCAACCAGCGGGGGTACAGCGTC
ACGGCACATGGCTCAGCACAAGAAGGGCTATTTCACTTGAAGGAGGCGGT
AAGGGGAACCATCGGTTATGCATGGCCGGACCTAATAATCACGGACATAA
ACATGCCGATGATGGACGGTTACCAGTTTCTGGCGGCGTTACGGATGGCG
GGGGGGGGGGTGGGAGCTATCCCCGTGGTATTCTTGACGGCGAGAGGTCT
GACCGCGGATCGAATACAGGCGAGTAATACCCTTGAACACTACATATCAT
ACATAACGTTAAATGTGACGGTGTTGGTGTTCCCTTGTTGCACCGAGGTT
GGGACAAAGTGCAGCATGGTACCACGACGTTTGTTTAATTATTTCTCTTT
GTACTACGCTTTCCCAATGTTGTTGATTTCGTGCCCGATTAGCGATCCTC
AACACCAAAGTGTGCCCTTCAGCAGGAGATGCAAGCAACTAGACTGCTCA
TCTGTGACACGTGCTGTATACAGCACGGTTTTGAAGAAGGCCCCTGCCAC
ACCCCGCCCCTTCGTGCCGCATCCGGTTCTAGCTGTGTGTTTACTACTAC
TACCACTGCTAGTAGTAGTAATGGTAGTAGTCCGGGCCGTGCAGTCAGTA
TTTTTGCTACCGGAACCATCTACGTAGATCCCCAGGGCCTGCGCTCAGCG
GCTTACTGCAACAGAGCTCGCAAGTTGATTGATTGAGATATTTTAAGAAC
GATCATCACCGCCACACGACAAAGGTGTTTTGTTCATAAATGATGGTACC
CATGGGCATTATGTCAACATTGTTAAGGTGCATCTCAACTGAAGTAGGGG
GGTTTGGAGGAGAGCATCATCACGAGCTAGCAACTCCATGGAGACAGCTG
TACAGCGTGCAAGTCATCACCTGACTTACCTTGTCCCTGAAGTAGTTCAA
GGTCGGTAGTTAATAGCTCTGCAAATTTGCTGAGTTCCCTCTTCACGGAA
TTTCCTGTGCGCTCGTTTCAGCTGTGCGCTCTCCTCTTCGTGTTCAGTGG
TTTGCCATGTAGCTGTAGAGCACTGACGCTAGGTATTTTCGCGCCATTTT
GTCCACCAAGACCCACCGGAAACATATCATCACTCTCGATAGAATCTCAA
TCTCTCTCAGTAGTGTGAGGGCATTGTGGCGTTGTGGAGTTGTGGAGTTG
TTTTCAAGAGCGTGTTTATTTCGTGCCTTTGGGAAAAGGAACTGTCGCAA
CGTTAATAACCGTGCCAAAAGTACTCAAGCCACCGCCATGCCGCGAAAAC
ACGTGGAATAATGCACCTGAGACTTTCGCGGTTCGGGTCGATGAACATCG
GTCTGAATCGGCTCGTTTGGATCAGCCGTGGACAAACATGTGCTCGAAAT
CCGTTGATTACGAATCAGCCGTGGACAAACATGTGCTCACAATGCGTGGA
ATACGGATCAGACGTGCAAGCCATGTAAGGATCGAAAACAACGCACCAAT
ATTTCGATCTACCGGTGAACATGAACGGTATAAGCTGTGAGCAATCCGGT
CGATCTTAACGGTGATTTCTTGAGAAATGGCCGCCATTCTCACGAAAGAC
ACCTGGATATAGTGCGCAAGGACTGTTCCCAACTGGGCATTACCTTGCCG
TATGCATTTGTTCCTTGTGCAGGGTTACCGCGCAGGGATAAACGCCTACT
TAGCGAAACCCTTTGACCCAGAGGAACTGGTGTCCATCGTGGACAGCGTG
CTGCTCAATACTATGAATGCAGCGGAGGTGGCTGCAGCCGAAGCTGCTAC
AACTGCTTACGCAGAAGCCGCACTATCGTCGCCTGTTGGGCATGGCAACG
GAAACGATTACAACAACAGCCTTGCCGCTAGGGGCAGCGGAAGAAGCGAA
GACGCTCAACCAGTCACGAGCGTGGTAGATGTGGGCGAAAATGGAGACGT
GCTTGGTGACGTTCGGAGGTAATTACATCGATAGATACAGTTCCGAAACC
ATTGTTGTGATATATTTTAGAGAATATATACTGTTGGTACTGGTGTGTTC
TCAATACTGTTCGAATTATATAAAGCTCTACTGCGCTCCTGAGTCATCCC
ACTTTTTGCCGGGATATACTGGGGAAATATACTGTCTTTTCGGGAGCTGT
GCTGGTTTCACTGGACATGTCCTCAGAATTTCGGAGACCTCTCTGCCCGA
AGCTTCCCGAAAGTAGGTTCAGAGTCCACCCGCCAGAAACAAGGACTGCT
GCTCTCTTCTTCCTCAATGTATGTTCCCTGTGCATACGTTGTCTCCAGGT
TCGGAGAATTTCTGTCGGCCGTTTGACATGTCGATTCCTCAACGCATTTG
ACAACGGGAGTCACGCGACTACCATGCACATCGTGGAACACAACGGGCCG
TCACCGGTGCATTAGTAGACCTTCTCCCTCCCTCACCTTCCCATGTTGCT
GCGCGTCTTTATAAACCCTGTTCGGCGTAAAAACTTAAGGGAACTCGGCG
ACATCAAAGCCCTTCTGTTGGCGGACCGAGCACAACGGAGGCAATCAGAG
GGCGTTACGATCAGCGGCGGGGACGACGAAGCGGGAGAAGGAACAAACAA
CCCAGGTGTCACTACAAGGGCCCCAAAACTCCTCACATCGTCCGACGATC
GATCCTCGAACCGCTCCCCGGATCCGTACTCGGACCAGCCCCTGGGATCT
CAGAGCTGGTCTCCGAGCCAACTGGGCACGTCTGCCGACCCTGGCCAAGA
TTCTGCCACAATGGGCTCCGCCGAGAAGGAGGACGGTGGAAAGGAGTCGG
AGGTGTCTCCGCTCTCAACGCTGACGCGTAGGGAGGTTCAGGTGTTGGAC
CTTCTGACCGAAGGACACACCAACCGGTGCGTGTTTGGCTTCTTTGGCAT
GTATCGTGCCTCGCACATGTTTTTTTCAATTGACTGTGTATCGAAAACCG
ATTTCAGACAATCGACATTTTCTCAGTGGGGTGAGTTGCGCACCCATGCC
TGTTATTAACGAATGTGGTCGCAGGGCGTGCGCTCGTCTCTTGCAGAGGG
CGTCGGCATCCATAGTCCGTTGACCAATAAACAAAGGTGGCGTTGTAGTT
CGACTTATTTCATGTTATTTAATGCCTTTGTTCCGTGATCAGAGCTATCT
GCGGTCCATGCTATCATGAGTATAGGTGCCAAATGGACCGGGCGGCCTGA
TCGCGGTCCAAATTTTGAGTTCACCCACTATATTTCTTCCTGTCGATGTG
TAGCGCGTTTTCCCTGTTTTTCCAAGTGGGAAGCAGGAGTACGAGCCTTC
TGTGCACAACCCACCGACGTGAAACGGCTCGTGATTTCGATGCGTGTTGC
CCCCGTTGGTACCTTGGTTGCTGGACCTCTAGGGTAGCGTGAGTATGCTA
CTTGTAGCAATTGTAGAGGTGGTTGGTTGAGCCCAGTGCATTTTACTCGC
AATATTTTTTGTGCCAAAATGCGTCGGAGCCAACTTAAAAAAAGGATGGC
GACCGCGATGAGCGTATATCTTGACAAGATTGCTCTCCCCGCCACTTGCT
TTTTCTTCTCTGTTTACTGCTTTATCGCCCAGCAGCGAAATAGCGACGCT
AGTGGGTCTCGGCGTGCGATCGATCGAGAAACACGTGTCTAAACTGCTTT
CCAAGACGGGTACCTCGAACCGGACAGAGCTCGTCCGGTACAGCTTGCGA
ACGAACTTGACTAAGCTGAAATGAGGCAGCCAAGCAAACCTTCACTGGTT
GTGTATGTGCATACAAAGCTTCAAGGTTTTAAGTACTCCTGTAAGATTTA
AAGAGGTAGCTCTCTTGTTGGTGTCTGTCTGGGTACGAACGCGAGTAGAG
TATCACGTTGATTGAACCGGCAGTAATCCGGCAGATTTGGTACATCGTGT
GCCTTTGATGAGCGCGGGCCAGCTTCCACATATTTTGATCTTGCGTGGTG
ATCACTCTGTGTATAACTTCGATTGATAAGGTGCCCCAACCTCGTGGTGT
GTGGTAGACAAATGCCGAGTCGCGTATATGATGCTTTCGGCAGGTTCATA
TGACGTACGCATAACAAGTTGATGGTTCATCTGGTGTGCGGGAAGAAAGA
AGCGCTGCTGTTGCGTGAAATACGGAACAGTTATTCTCCAAACACCGGAT
ACGGCGCGCAGAGCGGTCACCATGTCGCACTGCCCTTGGTATCAGTAGGT
GCTCGAGTGTTTGCAGTAAATTGCTAGTACTCCCAACTAAAGTGTACCCC
AGACCTTGCTTGCTCGTAGCCACGACCAAATAACCGCGTCCGTATGCGAG
TATCACTACTGGCATCAACTTCAAGCTTCAGTATATACGGCGCTCGCGGA
GAGGAATAGATGGAAGATTGAGATTCACCTGTTTTTCTTAACTTGCAAAT
TTGCATGGCTATTTGCAAAAAGACTTTCGTTAATAAATGCCATCGACGAT
T
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig471:12935..24985+

>mRNA_H-paniculata_contig471.11722.1 ID=mRNA_H-paniculata_contig471.11722.1|Name=mRNA_H-paniculata_contig471.11722.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3102bp|location=Sequence derived from alignment at H-paniculata_contig471:12935..24985+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCACGCCTCAGGCGACAGTGTGTCGTGGTTAATGTTGCCCTTACTTG
TTGTCTTTGCTATTTTCTCGTAAGTTTGACAGCCCTCGCGACAGCTGTCA
GTAGACAGCACCGTCTTTTTGAATTTCATTTATTACCCGCAGCCGACTCA
GCTTTCTGTTTACCAGCTGGAGCTGCTTGTCGGCGAACATGGTGTGAACA
CTCTCGAGATCCTCGGAGTGTTGCTGATGCTAACACGCGTTATTCACGAC
CGAGTGTCATCAGTAGGCAGGTAATGGGCAGACGGTGGGTGAGAAGGGAA
TACTCTGCGGGCGTGGTTAGATGTCCCAGATGTCACGCCTCAGGCGACAG
TGTGTCGTGGTTAATGTTGCCCTTACTTGTTGTCTTTGCTATTTTCTCGT
AAGTTTGACAGCCCTCGCGACAGCTGTCAGTAGACAGCACCGTCTTTTTG
AATTTCATTTATTACCCGCAGCCGACTCAGCTTTCTGTTTACCAGCTGGA
GCTGCTTGTCGGCGAACATGGTGTGAACACTCTCGAGATCCTCGGAGTGT
TGCTGATGCTAACACGCGTTATTCACGACCGAGTGTCATCAGTAGGCAGG
TAATGGGCAGACGGTGGGTGAGAAGGGAATACTCTGCGGGCGTGGTTAGA
TGTCCCAGATGGCCGGTATCAACGCCGTCGGTATTGGGATCGACGGCGGA
AGGAGGCGACAAGGCGCTGTCAGAAGGTGCAGACTTAGCCCCTGGGACCG
GCGGTCAGTATCGACTCATGCTGGTAGACGACGAGGAGGCCCTACGTAAA
GCAGTCTCGGAATATCTCCGGCAGATGGCCGGTATCAACGCCGTCGGTAT
TGGGATCGACGGCGGAAGGAGGCGACAAGGCGCTGTCAGAAGGTGCAGAC
TTAGCCCCTGGGACCGGCGGTCAGTATCGACTCATGCTGGTAGACGACGA
GGAGGCCCTACGTAAAGCAGTCTCGGAATATCTCCGGCAGCGGGGGTACA
GCGTCACGGCACATGGCTCAGCACAAGAAGGGCTATTTCACTTGAAGGAG
GCGGTAAGGGGAACCATCGGTTATGCATGGCCGGACCTAATAATCACGGA
CATAAACATGCCGATGATGGACGGTTACCAGTTTCTGGCGGCGTTACGGA
TGGCGGGGGGGGGGGTGGGAGCTATCCCCGTGGTATTCTTGACGGCGAGA
GGTCTGACCGCGGATCGAATACAGCGGGGGTACAGCGTCACGGCACATGG
CTCAGCACAAGAAGGGCTATTTCACTTGAAGGAGGCGGTAAGGGGAACCA
TCGGTTATGCATGGCCGGACCTAATAATCACGGACATAAACATGCCGATG
ATGGACGGTTACCAGTTTCTGGCGGCGTTACGGATGGCGGGGGGGGGGGT
GGGAGCTATCCCCGTGGTATTCTTGACGGCGAGAGGTCTGACCGCGGATC
GAATACAGGGTTACCGCGCAGGGATAAACGCCTACTTAGCGAAACCCTTT
GACCCAGAGGAACTGGTGTCCATCGTGGACAGCGTGCTGCTCAATACTAT
GAATGCAGCGGAGGTGGCTGCAGCCGAAGCTGCTACAACTGCTTACGCAG
AAGCCGCACTATCGTCGCCTGTTGGGCATGGCAACGGAAACGATTACAAC
AACAGCCTTGCCGCTAGGGGCAGCGGAAGAAGCGAAGACGCTCAACCAGT
CACGAGCGTGGTAGATGTGGGCGAAAATGGAGACGTGCTTGGTGACGTTC
GGAGGGTTACCGCGCAGGGATAAACGCCTACTTAGCGAAACCCTTTGACC
CAGAGGAACTGGTGTCCATCGTGGACAGCGTGCTGCTCAATACTATGAAT
GCAGCGGAGGTGGCTGCAGCCGAAGCTGCTACAACTGCTTACGCAGAAGC
CGCACTATCGTCGCCTGTTGGGCATGGCAACGGAAACGATTACAACAACA
GCCTTGCCGCTAGGGGCAGCGGAAGAAGCGAAGACGCTCAACCAGTCACG
AGCGTGGTAGATGTGGGCGAAAATGGAGACGTGCTTGGTGACGTTCGGAG
GGAACTCGGCGACATCAAAGCCCTTCTGTTGGCGGACCGAGCACAACGGA
GGCAATCAGAGGGCGTTACGATCAGCGGCGGGGACGACGAAGCGGGAGAA
GGAACAAACAACCCAGGTGTCACTACAAGGGCCCCAAAACTCCTCACATC
GTCCGACGATCGATCCTCGAACCGCTCCCCGGATCCGTACTCGGACCAGC
CCCTGGGATCTCAGAGCTGGTCTCCGAGCCAACTGGGCACGTCTGCCGAC
CCTGGCCAAGATTCTGCCACAATGGGCTCCGCCGAGAAGGAGGACGGTGG
AAAGGAGTCGGAGGTGTCTCCGCTCTCAACGCTGACGCGTAGGGAGGTTC
AGGTGTTGGACCTTCTGACCGAAGGACACACCAACCGGGAACTCGGCGAC
ATCAAAGCCCTTCTGTTGGCGGACCGAGCACAACGGAGGCAATCAGAGGG
CGTTACGATCAGCGGCGGGGACGACGAAGCGGGAGAAGGAACAAACAACC
CAGGTGTCACTACAAGGGCCCCAAAACTCCTCACATCGTCCGACGATCGA
TCCTCGAACCGCTCCCCGGATCCGTACTCGGACCAGCCCCTGGGATCTCA
GAGCTGGTCTCCGAGCCAACTGGGCACGTCTGCCGACCCTGGCCAAGATT
CTGCCACAATGGGCTCCGCCGAGAAGGAGGACGGTGGAAAGGAGTCGGAG
GTGTCTCCGCTCTCAACGCTGACGCGTAGGGAGGTTCAGGTGTTGGACCT
TCTGACCGAAGGACACACCAACCGCGAAATAGCGACGCTAGTGGGTCTCG
GCGTGCGATCGATCGAGAAACACGTGTCTAAACTGCTTTCCAAGACGGGT
ACCTCGAACCGGACAGAGCTCGTCCGGTACAGCTTGCGAACGAACTTGAC
TAAGCTGAAATGACGAAATAGCGACGCTAGTGGGTCTCGGCGTGCGATCG
ATCGAGAAACACGTGTCTAAACTGCTTTCCAAGACGGGTACCTCGAACCG
GACAGAGCTCGTCCGGTACAGCTTGCGAACGAACTTGACTAAGCTGAAAT
GA
back to top