mRNA_H-paniculata_contig4702.11711.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4702.11711.1
Unique NamemRNA_H-paniculata_contig4702.11711.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4702.11711.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY)

HSP 1 Score: 202 bits (513), Expect = 2.540e-51
Identity = 151/483 (31.26%), Postives = 228/483 (47.20%), Query Frame = 1
Query:    1 CSAYEKGKMSKQPVNNYRKERTTESLELMHTDIAGPGD-KSFGGYRFDIIFVDDYSGFRSVSTLRQKSEAL*VLKQFERDVARANDLRIKRLRPDQRGEYAGKPFRRFCAENDIKQGFSTACTPQQNGMAERSWRSIFEMVRANMITANMGRRYWAEAVRSAVYSLNRAPTRPHNEGMPCEIWHDERPKLDHLRVFVRTAYVIFQLQQRRKLDDKA*AGVFLRYDEDSPRFCTQNPENKSVQLSRNVTFDEEDFITGHGGQLEHDGTRNMEEAVTRSRAQGEQGSVTNTEDRISASQMPPILPTHSLPAASVNPFNVLSDDXXXXXNRDSKKKDAEPFVQRPRDPSPTRXXXXXRENREEVPGATARMANVEGTGNFLETVSNGEPNSAAEVLKGPEAKNGARQ----------WR--RDGGGLKAIRTKCILKRKLKEDGSVACYIARPVVQSFSQVEGEEVLETSASVARMSTLRTFLAIS 1410
            C A  KGK  +Q     R  R    LE++HTDIAGP D  S GG R+ + F+DD+S    +  L++KSEAL  LK+F+    + +   +K LR D+ GEY  K F  FC E+ I    +   TPQQNG+AER  R+I +M R+ +    + R +WAEAVR AVY LNR PT+      P E W  ++P + H ++F   AY       R+KLDD+    +F+ YDE S  +   NP  K + +SR+V FDE D+      + + +G             + + G + N +++          P  +LP++S                  S   DA   ++ P  P PT      RE R         + NV    +    + N +P +  E ++  + +N   +          W   R   G   I  K + K K+ ++G+V  Y AR VV+ + Q +G +  E  A VAR+ T+R   A++
Sbjct:  365 CEACIKGKQHRQSFKVGRSGRAQRLLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHFKIFGCIAYAHVPEHTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADYWRWSEEEKKVEGLF----------FEDKDGDLINQDEQADDQD-----PRQNLPSSS------------------SSSSDASNIIEDPEAP-PTELQRSTRERRMPERYNDYELNNV----SLFCLLVNSDPITYEEAVEDDKWRNAMDEEIASIERNDTWELTRQPEGHNPIGVKWVYKTKINKEGNVEKYKARLVVKGYKQRQGIDYDEVFAPVARIETIRLLTAVA 809          
BLAST of mRNA_H-paniculata_contig4702.11711.1 vs. uniprot
Match: A0A6S7GFZ2_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GFZ2_PARCT)

HSP 1 Score: 188 bits (477), Expect = 5.500e-47
Identity = 140/478 (29.29%), Postives = 224/478 (46.86%), Query Frame = 1
Query:    1 CSAYEKGKMSKQPVNNYRKERTTESLELMHTDIAGP-GDKSFGGYRFDIIFVDDYSGFRSVSTLRQKSEAL*VLKQFERDVARANDLRIKRLRPDQRGEYAGKPFRRFCAENDIKQGFSTACTPQQNGMAERSWRSIFEMVRANMITANMGRRYWAEAVRSAVYSLNRAPTRPHNEGMPCEIWHDERPKLDHLRVFVRTAYVIFQLQQRRKLDDKA*AGVFLRYDEDSPRFCTQNPENKSVQLSRNVTFDEEDFITGHGGQLEHDGTRNMEEAVTRSRAQGEQGSVTN-----TEDRISASQMPPILPTHSLPAASVNPFNVLSDDXXXXXNRDSKKKDAEPFVQRPRDPSPTRXXXXXRENREEVPGATARMANVEGTGNFLETVSNGEPNSAAEVLKGPEAKNGARQWRRDGGGLKAIRTKCILKRKLKEDGSVACYIARPVVQSFSQVEGEEVLETSASVARMSTLRTFLAISRR 1416
            C A  + KM + PV      RTT+ LEL+H+D+ GP    S GG ++ + F DDY+ + +V  L+ KSE     +++   V     L++K LR D  GEY    F ++C    I   +S   TPQQNG++ER  R++ E  ++ +  ANM   +WAEAV +AVY  NR+PT   N   P E+W  ++P + +L+VF    ++      RRKLD ++   VF+ Y  D+  +   + E+K+   S++V F E  F         HD     +E + R     E+ SV +      ED++    +P I    +LPA   +             N ++K++   P    P + + T       E  + +  A       +      E  ++   N   E++  PE             G   I +K ++K K   DG+V  + AR V Q +SQ  G +  E  + VAR S++RT LA++ +
Sbjct:  161 CEACTRAKMHQIPVPKQSSNRTTQLLELIHSDVCGPMNTDSIGGSKYILTFTDDYTRYVTVYFLKNKSEVYEKFQEYVSMVENFTGLKVKTLRTDNGGEYVSNDFSKYCVNKGIVHQYSNPYTPQQNGVSERLNRTLMESAKSMIFHANMPINFWAEAVNTAVYLHNRSPTTSLNMKTPYELWFSKKPDVSNLKVFGSVCFIHIPSNLRRKLDPRSRKAVFIGYPLDTKGYKLYDIESKNFVQSKDVVFYENKF---------HDFKVVTKELIIREDVPEEKLSVDHEQHHDAEDQVPVPTVPDIEDKENLPAVGESYEESFM---KQVENLETKRQRKAPKKFSPDECNITESLTAENEKPQSISEALNDANASKWKQALKEEYNSLISNETWELVPPPE-------------GCNVIGSKWVMKIKRDADGNVDRHKARLVAQGYSQTPGIDYEEVFSPVARHSSIRTLLALANK 613          
BLAST of mRNA_H-paniculata_contig4702.11711.1 vs. uniprot
Match: A0A7D9DPP1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9DPP1_PARCT)

HSP 1 Score: 189 bits (479), Expect = 6.390e-47
Identity = 140/478 (29.29%), Postives = 224/478 (46.86%), Query Frame = 1
Query:    1 CSAYEKGKMSKQPVNNYRKERTTESLELMHTDIAGP-GDKSFGGYRFDIIFVDDYSGFRSVSTLRQKSEAL*VLKQFERDVARANDLRIKRLRPDQRGEYAGKPFRRFCAENDIKQGFSTACTPQQNGMAERSWRSIFEMVRANMITANMGRRYWAEAVRSAVYSLNRAPTRPHNEGMPCEIWHDERPKLDHLRVFVRTAYVIFQLQQRRKLDDKA*AGVFLRYDEDSPRFCTQNPENKSVQLSRNVTFDEEDFITGHGGQLEHDGTRNMEEAVTRSRAQGEQGSVTN-----TEDRISASQMPPILPTHSLPAASVNPFNVLSDDXXXXXNRDSKKKDAEPFVQRPRDPSPTRXXXXXRENREEVPGATARMANVEGTGNFLETVSNGEPNSAAEVLKGPEAKNGARQWRRDGGGLKAIRTKCILKRKLKEDGSVACYIARPVVQSFSQVEGEEVLETSASVARMSTLRTFLAISRR 1416
            C A  + KM + PV      RTT+ LEL+H+D+ GP    S GG ++ + F DDY+ + +V  L+ KSE     +++   V     L++K LR D  GEY    F ++C    I   +S   TPQQNG++ER  R++ E  ++ +  ANM   +WAEAV +AVY  NR+PT   N   P E+W  ++P + +L+VF    ++      RRKLD ++   VF+ Y  D+  +   + E+K+   S++V F E  F         HD     +E + R     E+ SV +      ED++    +P I    +LPA   +             N ++K++   P    P + + T       E  + +  A       +      E  ++   N   E++  PE             G   I +K ++K K   DG+V  + AR V Q +SQ  G +  E  + VAR S++RT LA++ +
Sbjct:  409 CEACTRAKMHRIPVPKQSSNRTTQPLELIHSDVCGPMNTDSIGGSKYILTFTDDYTRYVTVYFLKNKSEVYEKFQEYVSMVENFTGLKVKTLRTDNGGEYVSNDFSKYCVNKGIVHQYSNPYTPQQNGVSERLNRTLMESAKSMIFHANMPINFWAEAVNTAVYLHNRSPTTSLNMKTPYELWFSKKPDVSNLKVFGSVCFIHIPSNLRRKLDPRSRKAVFIGYPLDTKGYKLYDIESKNFVRSKDVVFYENKF---------HDFKVVTKELIIREDVPEEKLSVDHEQHHDAEDQVPVPTVPDIEDEENLPAVGESYEESFM---KQVENLETKRQRKAPKKFSPDECNITESLTAENEEPQSISEALNGANASKWKQALKEEYNSLISNETWELVPPPE-------------GCNVIGSKWVMKIKRDADGNVDRHKARLVAQGYSQTPGIDYEEVFSPVARHSSIRTLLALANK 861          
BLAST of mRNA_H-paniculata_contig4702.11711.1 vs. uniprot
Match: A0A6S7H8C9_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H8C9_PARCT)

HSP 1 Score: 185 bits (469), Expect = 5.990e-46
Identity = 139/478 (29.08%), Postives = 223/478 (46.65%), Query Frame = 1
Query:    1 CSAYEKGKMSKQPVNNYRKERTTESLELMHTDIAGP-GDKSFGGYRFDIIFVDDYSGFRSVSTLRQKSEAL*VLKQFERDVARANDLRIKRLRPDQRGEYAGKPFRRFCAENDIKQGFSTACTPQQNGMAERSWRSIFEMVRANMITANMGRRYWAEAVRSAVYSLNRAPTRPHNEGMPCEIWHDERPKLDHLRVFVRTAYVIFQLQQRRKLDDKA*AGVFLRYDEDSPRFCTQNPENKSVQLSRNVTFDEEDFITGHGGQLEHDGTRNMEEAVTRSRAQGEQGSVTN-----TEDRISASQMPPILPTHSLPAASVNPFNVLSDDXXXXXNRDSKKKDAEPFVQRPRDPSPTRXXXXXRENREEVPGATARMANVEGTGNFLETVSNGEPNSAAEVLKGPEAKNGARQWRRDGGGLKAIRTKCILKRKLKEDGSVACYIARPVVQSFSQVEGEEVLETSASVARMSTLRTFLAISRR 1416
            C A  + KM + PV      RTT+ LEL+H+D+ GP    S GG ++ + F DDY+ + +V  L+ KSE     +++   V     L++K LR D  GEY    F ++C    I   +S   TPQQNG++ER  R++ E  ++ +  ANM   +WAEAV +AVY  NR+PT   N   P E+W  ++P + +L+VF    ++      RRKLD ++   VF+ Y  ++  +   + E+K+   S++V F E  F         HD     +E + R     E+ SV +      ED++    +P I    +LPA   +             N ++K++   P    P + + T       E  + +  A       +      E  ++   N   E++  PE             G   I +K ++K K   DG+V  + AR V Q +SQ  G    E  + VAR S++RT LA++ +
Sbjct:   12 CEACTRAKMHRIPVPKQSSNRTTQPLELIHSDVCGPMNTDSIGGSKYILTFTDDYTRYVTVYFLKNKSEVYEKFQEYVSMVENFTGLKVKTLRTDNGGEYVSNDFSKYCVNKGIVHQYSNPYTPQQNGVSERLNRTLMESAKSMIFYANMPINFWAEAVNTAVYLHNRSPTTSLNMKTPYEVWFSKKPDVSNLKVFGSVCFIHTPSNLRRKLDPRSRKAVFIGYPLNTKGYKLYDIESKNFVRSKDVGFYENKF---------HDFKVVTKELIIREDVPEEKLSVDHEQHHDAEDQVPVPTVPDIEDEENLPAVGESYEESFM---KQVENLETKRQRKAPKKFSPDECNITESLTAENEEPQSISEALNGANASKWKQALKEEYNSLISNETWELVPPPE-------------GCNVIGSKWVMKIKRDADGNVDRHKARLVAQGYSQTPGINYEEVFSPVARHSSIRTLLALANK 464          
BLAST of mRNA_H-paniculata_contig4702.11711.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY)

HSP 1 Score: 184 bits (467), Expect = 2.710e-45
Identity = 102/248 (41.13%), Postives = 143/248 (57.66%), Query Frame = 1
Query:   19 GKMSKQPVNNYRKERTTESLELMHTDIAGPGD-KSFGGYRFDIIFVDDYSGFRSVSTLRQKSEAL*VLKQFERDVARANDLRIKRLRPDQRGEYAGKPFRRFCAENDIKQGFSTACTPQQNGMAERSWRSIFEMVRANMITANMGRRYWAEAVRSAVYSLNRAPTRPHNEGMPCEIWHDERPKLDHLRVFVRTAYVIFQLQQRRKLDDKA*AGVFLRYDEDSPRFCTQNPENKSVQLSRNVTFDEEDF 759
            GK  +Q     R  R    LE++HTDIAGP D  S GG R+ + F+DD+S    +  L++KSEAL  L++F+    + +   +K LR D+ GEY  K F  FC E+ I    +   TPQQNG+AER  R+I +M R+ +    + R +WAEAVR AVY LNR PT+      P E W  ++P + HL++F   AY     Q R+KLDD+    +F+ YDE S  +   NP  K + +SR+V FDE D+
Sbjct: 1292 GKQHRQSFEVGRSWRARRPLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTGRYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 1539          
BLAST of mRNA_H-paniculata_contig4702.11711.1 vs. uniprot
Match: A0A0N1ICY1_PAPMA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Papilio machaon TaxID=76193 RepID=A0A0N1ICY1_PAPMA)

HSP 1 Score: 183 bits (465), Expect = 4.080e-45
Identity = 147/494 (29.76%), Postives = 227/494 (45.95%), Query Frame = 1
Query:    1 CSAYEKGKMSKQPVNNYRKERTTESLELMHTDIAGPGD-KSFGGYRFDIIFVDDYSGFRSVSTLRQKSEAL*VLKQFERDVARANDLRIKRLRPDQRGEYAGKPFRRFCAENDIKQGFSTACTPQQNGMAERSWRSIFEMVRANMITANMGRRYWAEAVRSAVYSLNRAPTRPHNEGMPCEIWHDERPKLDHLRVFVRTAYVIFQLQQRRKLDDKA*AGVFLRYDEDSPRFCTQNPENKSVQL-SRNVTFDEEDFITGHGGQLEHDGTRNMEEAVTRSRAQGEQGSVTNTEDRISASQMPPILPTHSLPAASVNPFNVLSDDXXXXXNRDSKKKDAEPFVQRPRDPSPTRXXXXXRENREEVPGATARMANVEGTGNFLETVSNGEPNSAAEVLKGPEAKNGARQWRRD-------------------GGGLKAIRTKCILKRKLKEDGSVACYIARPVVQSFSQVEGEEVLETSASVARMSTLRTFLAISRRL 1419
            C A  KGK S+ P       R TE L L+H+D+ GP    SF G ++ + F+DDY+       +R KSE L V K F++ V    +L+IK LR D   EY  K F+ F  E+ IK   +   +PQQNG+AER+ R+I E  R  +  A + RR+WAEA+ +A+Y  N++P++      P E W   +  L +LR F   AY +   ++R+KLD K    +F+ Y  +S  +   +PEN S  + SR+V F            LE    +N+        +  E    +N +D  S      + PT  + ++  N  +  +       + D    + +  +Q+  D   T            V  A A  A             NGEP +  + L GP+A++    WR+                      G KA++ K + K+KL  +G +  Y AR V + F+Q  G +  ET + V R ST+RT +A++  L
Sbjct:  462 CVACLKGKQSRLPFPKQSYTRATEKLGLIHSDLCGPMSVNSFSGAKYLLTFIDDYTRMTFGYFIRNKSEVLPVFKIFKKFVENQTNLKIKMLRTDNGREYVNKDFQLFLQEHGIKHQTTVPYSPQQNGVAERANRTIIEAGRCMLQEAGLDRRFWAEALNTAIYIKNKSPSKAVRGTTPEEKWSGNKVNLSNLRTFGCVAYAMIPNEKRKKLDAKCKQYIFVGYCSESKGYRLIDPENPSKCIKSRDVQF------------LEGKMYKNLVLNKGNKTSDCELNISSNEDDLNSNDINDQVNPTSVIESSDSNSADTSASGCSFIDDPDDVTWNPDMTLQQSSDSDDT------------VSIAVAMTA-----------CHNGEPQTIQDALSGPDAEH----WRKAIADEYKSFEKNKAWNLTLLPAGKKAVKCKWVFKKKLGSEGELLHYKARLVAKGFTQEYGIDYKETYSPVVRYSTIRTLIALAVNL 916          
BLAST of mRNA_H-paniculata_contig4702.11711.1 vs. uniprot
Match: A0A0J7KG03_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KG03_LASNI)

HSP 1 Score: 182 bits (462), Expect = 4.940e-45
Identity = 149/479 (31.11%), Postives = 221/479 (46.14%), Query Frame = 1
Query:    1 CSAYEKGKMSKQPVNNYRKERTTESLELMHTDIAGPGDK-SFGGYRFDIIFVDDYSGFRSVSTLRQKSEAL*VLKQFERDVARANDLRIKRLRPDQRGEYAGKPFRRFCAENDIKQGFSTACTPQQNGMAERSWRSIFEMVRANMITANMGRRYWAEAVRSAVYSLNRAPTRPHNEGMPCEIWHDERPKLDHLRVFVRTAYVIFQLQQRRKLDDKA*AGVFLRYDEDSPRFCTQNPENKSVQLSRNVTFDEEDFITGHGGQ-----LEHDGTRN--MEEAVTRSRAQGEQ-GSVTNTEDRISASQMPPILPTHSLPAASVNPFNVLSDDXXXXXNRDSKKKDAEPFVQRPRDPSPTRXXXXXRENREEVPGATARMANVEGTGNFLETVSNGEPNSAAEVLKGPEAKNGARQWRRDGGGLKAIRTKCILKRKLKEDGSVACYIARPVVQSFSQVEGEEVLETSASVARMSTLRTFLAIS 1410
            C +  KGK  + P + + K R+ E L+++H+D+ GP +K S GG R+ + F+DDYS    V  L++KS+      +F+  V      RIK LR D   EY  K F R+  ++ IK  F+   TPQQNG+AER  R+I E  +  +  A + + YWAEAV +AVY  NR+P       MP E+W    P L HL+ F   AY     + R+KLD K    +F+ Y EDS  F   +PE K V  SR+V F E       G Q     LE DG +N   E  V R R + ++  S  ++E   S+  +  +  T  L  ++  P  +  DD        +   D E                    N EE   ++  +  ++                A E  +   AKNG           +A+ TK + K K    G +  Y AR VV+  SQ+EG +  ET + V R ++++   A++
Sbjct:  288 CVSCIKGKQHRYPFS-HSKTRSREILQMVHSDVCGPMEKTSIGGSRYFLTFIDDYSKKTFVFFLKEKSQVKETFVEFKTLVENQTGKRIKILRTDNGREYVNKEFERYMKKSGIKHQFTITYTPQQNGVAERENRTIIEKAKNMLFEAELPKIYWAEAVATAVYLTNRSPNSSIGNKMPEELWSGSTPSLTHLKTFGCRAYAHVPKELRQKLDPKGEELLFVGYCEDSKGFRLMDPETKKVTRSRDVIFLENHKYGNDGNQHVIQLLEDDGPQNELAENGVEREREENKEIDSEMSSEYSKSSDSVKNVDETAPLRRSARPPKPIKRDDYITYLTLSNDVTDPE--------------------NLEEALNSSDSVTWIK----------------AMEEERDFLAKNGTWTLVDLPKDKRALDTKWVFKTKRDVTGQIKRYKARLVVRGCSQIEGIDYNETYSPVVRYTSIQFLCALA 729          
BLAST of mRNA_H-paniculata_contig4702.11711.1 vs. uniprot
Match: A0A2G2VUS6_CAPBA (Integrase catalytic domain-containing protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2VUS6_CAPBA)

HSP 1 Score: 181 bits (460), Expect = 1.870e-44
Identity = 101/254 (39.76%), Postives = 145/254 (57.09%), Query Frame = 1
Query:    1 CSAYEKGKMSKQPVNNYRKERTTESLELMHTDIAGPGD-KSFGGYRFDIIFVDDYSGFRSVSTLRQKSEAL*VLKQFERDVARANDLRIKRLRPDQRGEYAGKPFRRFCAENDIKQGFSTACTPQQNGMAERSWRSIFEMVRANMITANMGRRYWAEAVRSAVYSLNRAPTRPHNEGMPCEIWHDERPKLDHLRVFVRTAYVIFQLQQRRKLDDKA*AGVFLRYDEDSPRFCTQNPENKSVQLSRNVTFDEEDF 759
            C A  KGK  +Q     +  R  + LE++H+D+AGP D  S GG R+ + F+DD+S    V  L++KSE L   K+F+  V + +   +K LR D+ GEY    F  F  E+ I    +   TPQQNG+AER  R+I ++ R+ +   ++ R +WAEAVR AVY LNR PT+      P E W  ++P + HL++F   AY     Q R+KLDD+    +F+ YDE S  +   NP  K V +SR+V FDE D+
Sbjct:  818 CEACIKGKQHRQSFEVGKSRRARKPLEIVHSDLAGPFDIPSLGGNRYYLTFIDDFSRRSWVYILKEKSETLDKFKEFKAMVEKQSGYYVKILRSDRGGEYTANLFEDFVKEHGIIHQLTVRYTPQQNGVAERKNRTILDLARSMVKGKHLPRNFWAEAVRCAVYLLNRCPTKSVRYMTPNEAWSGQKPGVGHLKIFGCIAYSHVPEQLRKKLDDRGEKCIFIGYDERSKAYRFYNPLTKKVIISRDVEFDEADY 1071          
BLAST of mRNA_H-paniculata_contig4702.11711.1 vs. uniprot
Match: A0A6D2JZV9_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JZV9_9BRAS)

HSP 1 Score: 179 bits (454), Expect = 4.420e-44
Identity = 140/484 (28.93%), Postives = 220/484 (45.45%), Query Frame = 1
Query:    1 CSAYEKGKMSKQPVNNYRKERTTESLELMHTDIAGPG-DKSFGGYRFDIIFVDDYSGFRSVSTLRQKSEAL*VLKQFERDVARANDLRIKRLRPDQRGEYAGKPFRRFCAENDIKQGFSTACTPQQNGMAERSWRSIFEMVRANMITANMGRRYWAEAVRSAVYSLNRAPTRPHNEGMPCEIWHDERPKLDHLRVFVRTAYVIFQLQQRRKLDDKA*AGVFLRYDEDSPRFCTQNPENKSVQLSRNVTFDEEDFITGHGGQL-EHDGTRNMEE-----------AVTRSRAQGEQGSVTNTEDRISASQMPPILPTHSLPAASVNPFNVLSDDXXXXXNRDSKKKDAEPFVQRPRDPSPTRXXXXXRENREEVPGATARMANV-EGTGNFLETVSNGEPNSAAEVLKGPEAKNGARQWRRDGGGLKAIRTKCILKRKLKEDGSVACYIARPVVQSFSQVEGEEVLETSASVARMSTLRTFLAIS 1410
            C   + GK  + P +N    R    LE +H+D+ GP    S+ G+R+ ++FVDDYS +  V  +++KSE     ++F+  V      +IK LR D  GE+    F  FC ++ IK+ FS   TPQQNG+AER  R + E  R+ +   N+ +  WAE +R A Y +NR P  P+N   P E+ H ++P + HLR+F    YV     QR KL+ KA   +F+ YDE    +   +PE     +SR+V FDE     G    L E DG  ++++            ++    QGE+GS    E+                            +D     N+  K+   +P   R      T          EE P +      V E      E +   + N   +++  P+              ++ +  K + + K K DG++  + AR V + FSQ  GE+  ET + VA+M+T+RT L+++
Sbjct:  162 CEGCQYGKSHRLPFDNSTS-RCNAPLERIHSDLMGPTRTSSYSGFRYMLLFVDDYSRYTWVYFVKEKSEVFSKFQEFKVTVEGELGRKIKTLRTDNGGEFMSNEFLSFCRKHGIKREFSCPYTPQQNGVAERKIRHLSETCRSWLHAKNLPKALWAEGMRCAAYVINRMPLSPNNMKSPYEMVHGKKPTVKHLRIFGSICYVHVFDSQRTKLEAKAKKCIFVGYDEQRKGWRCMDPETHRYTVSRDVVFDEVSSYYGSPQVLVEQDGAGSLKDDEPAAQIPSDGGISEPEMQGERGSTNQEEEE--------------------------EEDHGSLANQRPKRDIVKPARYRDERFVTTYSCYFASPFDEEEPSSYDEAKGVKEWETAMKEEMDALKKNETWDLVPKPK-------------DVQPVSCKWVYRIKRKRDGNIDRHKARLVARGFSQKYGEDYDETFSPVAKMTTVRTLLSLA 605          
BLAST of mRNA_H-paniculata_contig4702.11711.1 vs. uniprot
Match: A0A3S3RF48_9ACAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94-like protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3RF48_9ACAR)

HSP 1 Score: 174 bits (442), Expect = 4.570e-44
Identity = 98/251 (39.04%), Postives = 137/251 (54.58%), Query Frame = 1
Query:    1 CSAYEKGKMSKQPVNNYRKERTTESLELMHTDIAGPGD-KSFGGYRFDIIFVDDYSGFRSVSTLRQKSEAL*VLKQFERDVARANDLRIKRLRPDQRGEYAGKPFRRFCAENDIKQGFSTACTPQQNGMAERSWRSIFEMVRANMITANMGRRYWAEAVRSAVYSLNRAPTRPHNEGMPCEIWHDERPKLDHLRVFVRTAYVIFQLQQRRKLDDKA*AGVFLRYDEDSPRFCTQNPENKSVQLSRNVTFDE 750
            C    KGKMS++P  N    R+T++L+L+HTD+ GP   K+F G R+ + F+DDYS F     L  KSE      + E  V      RIK LR D+  EY  K F  FC    I Q F+ + TPQQNG+AER  R+I E  R  +  A +  +YW EAV++AVY  NR+ T+      P E W  ++P L +LRVF   AY    +++R+KLD  +   +FL Y E    +  Q  +   + +SR+V F E
Sbjct:  151 CEGCAKGKMSRRPFPNTSTNRSTKTLQLVHTDVCGPMQTKTFSGKRYFLTFIDDYSRFTVCYLLEHKSEVYDKFVECEALVTNMTSNRIKMLRSDEGCEYRSKKFNAFCKGKGIIQQFTASYTPQQNGVAERMNRTIVEAARCMLQAAQLDNKYWDEAVQTAVYLQNRSSTKALTNITPYEAWFGKKPDLSNLRVFGCQAYAHILIEKRQKLDANSTKCIFLGYSESIKAYRLQEVKTGKLVISRDVIFSE 401          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4702.11711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A2WSU7_HIBSY2.540e-5131.26Integrase catalytic domain-containing protein n=2 ... [more]
A0A6S7GFZ2_PARCT5.500e-4729.29Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9DPP1_PARCT6.390e-4729.29Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7H8C9_PARCT5.990e-4629.08Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6A2WXP0_HIBSY2.710e-4541.13Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=10... [more]
A0A0N1ICY1_PAPMA4.080e-4529.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7KG03_LASNI4.940e-4531.11Retrovirus-related pol polyprotein from transposon... [more]
A0A2G2VUS6_CAPBA1.870e-4439.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2JZV9_9BRAS4.420e-4428.93Integrase catalytic domain-containing protein n=1 ... [more]
A0A3S3RF48_9ACAR4.570e-4439.04Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4702contigH-paniculata_contig4702:10371..12404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score101.7
Seed ortholog evalue2.8e-19
Seed eggNOG ortholog7425.NV18849-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons4
Model size1879
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4702.11711.1prot_H-paniculata_contig4702.11711.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4702 10371..10778 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930400.1570182-CDS-H-paniculata_contig4702:10370..107781622930400.1570182-CDS-H-paniculata_contig4702:10370..10778Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4702 10371..10778 -
1691481274.3374383-CDS-H-paniculata_contig4702:10370..107781691481274.3374383-CDS-H-paniculata_contig4702:10370..10778Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4702 10371..10778 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930400.1779432-UTR-H-paniculata_contig4702:10778..110211622930400.1779432-UTR-H-paniculata_contig4702:10778..11021Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4702 10779..11021 -
1691481274.3519058-UTR-H-paniculata_contig4702:10778..110211691481274.3519058-UTR-H-paniculata_contig4702:10778..11021Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4702 10779..11021 -
1622930400.195596-UTR-H-paniculata_contig4702:11074..112911622930400.195596-UTR-H-paniculata_contig4702:11074..11291Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4702 11075..11291 -
1691481274.3614728-UTR-H-paniculata_contig4702:11074..112911691481274.3614728-UTR-H-paniculata_contig4702:11074..11291Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4702 11075..11291 -
1622930400.2138777-UTR-H-paniculata_contig4702:11366..115631622930400.2138777-UTR-H-paniculata_contig4702:11366..11563Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4702 11367..11563 -
1691481274.3741155-UTR-H-paniculata_contig4702:11366..115631691481274.3741155-UTR-H-paniculata_contig4702:11366..11563Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4702 11367..11563 -
1622930400.2264738-UTR-H-paniculata_contig4702:11590..124041622930400.2264738-UTR-H-paniculata_contig4702:11590..12404Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4702 11591..12404 -
1691481274.3878217-UTR-H-paniculata_contig4702:11590..124041691481274.3878217-UTR-H-paniculata_contig4702:11590..12404Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4702 11591..12404 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4702.11711.1

>prot_H-paniculata_contig4702.11711.1 ID=prot_H-paniculata_contig4702.11711.1|Name=mRNA_H-paniculata_contig4702.11711.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
MTLGDKSNGHDVEGFVHADGAEDVEDRKSTTGYVFKLNGGATSWCSMEQP
LVTRFSIGGEYVAAGKRGMETVYFKGLLGSIVFGCRGSTTSFEDHKSAIN
FSKGVGAHCRTKHIGVRWHGIREWIREGVLALKYV*
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mRNA from alignment at H-paniculata_contig4702:10371..12404-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4702.11711.1 ID=mRNA_H-paniculata_contig4702.11711.1|Name=mRNA_H-paniculata_contig4702.11711.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2034bp|location=Sequence derived from alignment at H-paniculata_contig4702:10371..12404- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTCGGCGTATGAGAAGGGGAAAATGTCGAAGCAGCCGGTAAATAATTA TCGAAAAGAGCGGACGACCGAGTCGTTAGAGCTGATGCACACCGACATAG CCGGACCGGGAGACAAGTCCTTCGGAGGATATCGCTTCGACATCATCTTC GTGGACGACTACAGCGGATTTCGCAGCGTCTCTACATTGCGACAAAAGTC GGAGGCGCTATAGGTCCTGAAGCAGTTCGAGAGGGACGTAGCGAGGGCAA ACGATTTGCGGATTAAGCGCCTTCGGCCGGATCAGAGAGGGGAATATGCT GGGAAGCCTTTTAGACGTTTTTGCGCGGAAAATGACATCAAGCAGGGGTT CTCTACCGCCTGCACACCGCAACAAAACGGTATGGCGGAGCGCAGCTGGC GCAGCATTTTCGAGATGGTAAGAGCCAACATGATCACCGCCAACATGGGT CGTCGATATTGGGCGGAAGCGGTGCGCTCAGCAGTATATTCCCTTAATCG CGCCCCGACGCGACCGCACAACGAAGGAATGCCATGCGAAATATGGCACG ACGAGAGACCAAAGTTGGACCACCTTCGCGTATTTGTCCGCACGGCGTAT GTTATATTCCAGTTGCAGCAGAGACGCAAGCTCGACGACAAGGCATAGGC GGGGGTGTTTCTGCGGTACGACGAGGACAGCCCGAGGTTTTGCACACAAA ACCCGGAAAACAAGAGTGTCCAGTTGAGCAGGAATGTGACATTTGATGAA GAGGACTTCATAACGGGTCATGGTGGACAGCTAGAGCACGACGGGACGCG CAATATGGAAGAGGGTTTTTGAACACCGCCAATCACGCCAGCGGTCACTC GATCCCGCGCCCAAGGCGAGCAAGGAAGCGTAACTAACACGGAAGACCGA ATATCGGCGTCACAAATGCCGCCGATATTGCCGACACATTCGCTGCCAGC CGCCAGTGTAAACCCATTCAATGTCTTGAGCGATGACGATGATGACGAAA GTAACAGGGACTCCAAGAAGAAGGATGCGGAGCCCTTTGTCGAAGGCTCA CCATCAGCACGGACAGCGGCACCGCGTCGCGGGGGAACCACCACGAAGTA GTCAGGGACGGAGGTGCAGCGCCCGCGAGATCCGTCACCAACACGAACAC GGGCGAGAGCGAGGGAAAACCGCGAAGAAGTTCCAGGCGCTACCGCGCGC ATGGCAAACGTGGAAGGCACAGGCAACTTTCTAGAGACGGTATCTAACGG AGAGCCGAACTCTGCGGCAGAAGTATTAAAGGGTCCAGAGGCGAAGAATG GCGCGCGGCAATGGAGGAGAGATGGGGGGGGTTGGTGGAAAATGGAACAT GGGAAAGCGAAGACCCAGAGAGGTTATCGGTAGGGCTGAAGGCGATTCGT ACGAAATGCATTTTAAAGCGGAAACTGAAGGAGGACGGCAGCGTGGCATG CTACATAGCGCGACCGGTAGTTCAAAGCTTTTCACAGGTGGAGGGTGAAG AGGTTCTTGAAACTAGTGCCTCCGTAGCTCGCATGTCGACGTTACGTACC TTTTTAGCCATCTCGAGAAGACTTCAGTACATGCAAACGCGTTTTTTGTT ATCTCAGTACTGTGCCTAACCTCGGCATGACGCTCGGCGATAAGAGTAAT GGCCACGATGTGGAAGGATTCGTTCATGCCGACGGGGCGGAAGATGTCGA GGACCGAAAGTCCACAACAGGATACGTATTTAAGCTAAACGGTGGTGCGA CAAGTTGGTGCTCCATGGAGCAGCCGTTAGTTACGCGGTTCAGTATAGGG GGAGAGTACGTTGCTGCAGGAAAAAGGGGAATGGAGACCGTATATTTTAA GGGGTTACTAGGATCGATAGTTTTCGGATGCAGGGGGAGCACGACATCAT TTGAGGACCATAAATCAGCTATTAATTTCAGTAAGGGAGTTGGCGCACAC TGCAGGACAAAGCACATCGGAGTGCGCTGGCACGGAATTCGAGAGTGGAT TCGGGAAGGAGTATTGGCGTTAAAATACGTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4702:10371..12404-

>mRNA_H-paniculata_contig4702.11711.1 ID=mRNA_H-paniculata_contig4702.11711.1|Name=mRNA_H-paniculata_contig4702.11711.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig4702:10371..12404- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGCTCGGCGATAAGAGTAATGGCCACGATGTGGAAGGATTCGTTCA
TGCCGACGGGGCGGAAGATGTCGAGGACCGAAAGTCCACAACAGGATACG
TATTTAAGCTAAACGGTGGTGCGACAAGTTGGTGCTCCATGGAGCAGCCG
TTAGTTACGCGGTTCAGTATAGGGGGAGAGTACGTTGCTGCAGGAAAAAG
GGGAATGGAGACCGTATATTTTAAGGGGTTACTAGGATCGATAGTTTTCG
GATGCAGGGGGAGCACGACATCATTTGAGGACCATAAATCAGCTATTAAT
TTCAGTAAGGGAGTTGGCGCACACTGCAGGACAAAGCACATCGGAGTGCG
CTGGCACGGAATTCGAGAGTGGATTCGGGAAGGAGTATTGGCGTTAAAAT
ACGTGTAGATGACGCTCGGCGATAAGAGTAATGGCCACGATGTGGAAGGA
TTCGTTCATGCCGACGGGGCGGAAGATGTCGAGGACCGAAAGTCCACAAC
AGGATACGTATTTAAGCTAAACGGTGGTGCGACAAGTTGGTGCTCCATGG
AGCAGCCGTTAGTTACGCGGTTCAGTATAGGGGGAGAGTACGTTGCTGCA
GGAAAAAGGGGAATGGAGACCGTATATTTTAAGGGGTTACTAGGATCGAT
AGTTTTCGGATGCAGGGGGAGCACGACATCATTTGAGGACCATAAATCAG
CTATTAATTTCAGTAAGGGAGTTGGCGCACACTGCAGGACAAAGCACATC
GGAGTGCGCTGGCACGGAATTCGAGAGTGGATTCGGGAAGGAGTATTGGC
GTTAAAATACGTGTAG
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