mRNA_H-paniculata_contig470.11705.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig470.11705.1 vs. uniprot
Match: D7G7U0_ECTSI (Ephrin_rec_like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U0_ECTSI) HSP 1 Score: 345 bits (886), Expect = 8.220e-117 Identity = 188/266 (70.68%), Postives = 214/266 (80.45%), Query Frame = 1
Query: 1 GRLLEAAVLPGTFFLAWHAWGTLPP-----LVSATVEQCKLDCA----AEYTTSEIMNSSSWSMWDTQRLVGPTKPSVELNATYPHAKAPFPLPFYSFCQLGCSYFFSASPQNTTCKGLCDDVYARNVSVGISDYAEKARLECRDGCDIAVLRCQSGYSCVDGVMSKCAAGTYRNTSYEMVTSCLQCPKGTYREGEKGRGVQDCDXXXXXXXXXXXXXXXXXXXXXXXXGLYAELEGTAECSCITADSCIPEWQNYQRNSVPFVGR 771
G LL A V+P TF LAW AW TL VSAT+EQC LDCA AE +N SWS+WDTQRLVGPT+P+ E+NATYP+A+AP PLPF+SFCQLGCSYFF+ SP+NTTC GLCDD Y RNVSVGI+DYAEKARLECRDGC+IAVLRCQ GYSC GVMS+C+ GTYRNTSY+M+ +C QCPKGTYR KG GV D XXXXXXXXXXXXXXXXXXXXXXXX YA+ EGTAECSC+T DSC+PEWQN+QR+S+P +GR
Sbjct: 5 GGLLRAFVVPTTFALAWQAWTTLTASNSSLFVSATLEQCHLDCAGNTTAELVADAALNGGSWSVWDTQRLVGPTEPASEVNATYPYARAPLPLPFHSFCQLGCSYFFAGSPRNTTCSGLCDDFYVRNVSVGINDYAEKARLECRDGCNIAVLRCQPGYSCAAGVMSECSPGTYRNTSYDMINTCTQCPKGTYRAKGKGSGVDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAKEEGTAECSCVTEDSCLPEWQNFQRDSMPHIGR 270
BLAST of mRNA_H-paniculata_contig470.11705.1 vs. uniprot
Match: A0A7S3HQK9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQK9_9STRA) HSP 1 Score: 146 bits (368), Expect = 7.500e-39 Identity = 109/254 (42.91%), Postives = 138/254 (54.33%), Query Frame = 1
Query: 58 WGTLPPLVSATVEQCKLDCAAEYTTSEIMNSSSWSMWDTQRLVGPTKPSVELNATYPHAKAPFPLPFYSFCQLGCSYFFSASPQNTTCKGLCDDVYARNVSVGISDYAEKARLECRDGCDIAVLRCQSGYSCVDGVMSKCAAGTYRNT-------SYEMVTSCLQCPKGTYREGEKGRGVQDCDXXXXXXXXXXXXXXXXXXXXXXXXGLYAELEGTAECSCITADSC---------IPEWQNYQRNSVPFVGR 771
W L V+ V+ C+ +C + RL GPTK ++ +P A A FP FCQLGC F++ P+NTTCK LC+ Y ++VG +D AE+A+LEC+DGC+IA+ CQ+GY C +G+M C AGTYR + E TSC +CP G YR KG+ XXXXXXXXXXXXXXXXXXXXXXXX G C CIT SC +Y R S+PF+GR
Sbjct: 21 WTDLDWQVNGQVDLCQSNCVSA-----------------DRLTGPTK--MQQTKQHPWAMAAFPTKQKGFCQLGCQLFYTEVPKNTTCKRLCNYFYRYKITVGYNDLAEEAKLECQDGCEIALQVCQAGYYCDEGIMLPCPAGTYREPVTDVSILALEKATSCTKCPYGRYRSTNKGKSADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQRLCKCITPGSCGSIIDDNVVFSNGVDYYRESIPFIGR 255
BLAST of mRNA_H-paniculata_contig470.11705.1 vs. uniprot
Match: A0A835ZBR7_9STRA (Ephrin_rec_like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBR7_9STRA) HSP 1 Score: 140 bits (352), Expect = 4.420e-37 Identity = 96/170 (56.47%), Postives = 114/170 (67.06%), Query Frame = 1
Query: 265 FCQLGCSYFFSASPQNTTCKGLCDDVYARNVSVGISDYAEKARLECRDGCDIAVLRCQSGYSCVDGV-MSKCAAGTYRNTSYEMVTSCLQCPKGTYREGEKGRGVQDCDXXXXXXXXXXXXXXXXXXXXXXXXGLYAELEGTAECSCITADSCIPEWQNYQRNSVPFVGR 771
FC+ GC+YF+S+SP +C CD++Y + S +SD+AEKARL+CRDGC I CQ GY C M +C GTYRN S VT C+ CP G YRE G G+ D XXXXXXXXXXXXXXXXXXXXXXXX LY +EG A C+ IT DS PE+QN S PF+GR
Sbjct: 35 FCEAGCAYFYSSSPTLQSCDVNCDEMYRQRTSFNVSDWAEKARLDCRDGCRIGFRVCQPGYKCEHAHGMVECEPGTYRNASDADVTQCIACPAGHYREAPGGAGLLDXXXXXXXXXXXXXXXXXXXXXXXXXXXLYTLVEGQAACANITYDSGNPEFQNLLNESEPFLGR 204
BLAST of mRNA_H-paniculata_contig470.11705.1 vs. uniprot
Match: A0A7S1TV74_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TV74_9STRA) HSP 1 Score: 140 bits (354), Expect = 8.680e-37 Identity = 103/228 (45.18%), Postives = 130/228 (57.02%), Query Frame = 1
Query: 58 WGTLPPLVSATV------EQCKLDCAAEYTTSEIMNSSSWSMWDTQRLVGPTKPSVELNATYPHAKAPFPLPFYSFCQLGCSYFFSASPQNTTCKGLCDDVYARNVSVGISDYAEKARLECRDGCDIAVLRCQSGYSCVDGVMSKCAAGTYRNTSYEMVTSCLQCPKGTYREGEKGRGVQDCDXXXXXXXXXXXXXXXXXXXXXXXXGLYAELEGTAECSCITADSCI 723
W L PL +A + + CK DC+ D R VGPT+P +P AP P P+ FCQ GCS FF + P T C+ CD +Y +V+V +D AE ARLECRDGC++ +LRCQ+GY C G M +C GTYR+ + V +C+ CP+G YR +GR ++ XXXXXXXXXXXXXXXXXXXXXXXX G A C CIT S +
Sbjct: 2 WRLLLPLAAALLPAAADLDHCKADCS-----------------DAARPVGPTRPPNTRG--HPWFPAPNPNPYLQFCQTGCSLFFESYPVLTDCQAECDRIYRYDVTVAYNDQAEVARLECRDGCEMGLLRCQAGYYCTAGSMLQCPIGTYRDVDFAAVEACVDCPRGRYRSDPRGRYLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLALCKCITTKSFV 210
BLAST of mRNA_H-paniculata_contig470.11705.1 vs. uniprot
Match: A0A7S0XEG6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEG6_9STRA) HSP 1 Score: 121 bits (303), Expect = 1.420e-29 Identity = 94/186 (50.54%), Postives = 111/186 (59.68%), Query Frame = 1
Query: 178 RLVGPTKPSVELNATYPHAKAPFPLPFYSFCQLGCSYFFSASPQNTTCKGLCDDVYARNVSVGISDYAEKARLECRDGCDIAVLRCQSGYSCVDGVMSKCAAGTYRNT-------SYEMVTSCLQCPKGTYREGEKGRGVQDCDXXXXXXXXXXXXXXXXXXXXXXXXGLYAELEGTAECSCITAD 714
RL GP KP T+P A FP +FC+LGC YFFS N TC C Y + G SD AE A+LEC DGC+IA+ CQ+GY CV+G M+ C AG YR + + E V +C+ CP G YR +KGR D XXXXXXXXXXXXXXXXXXXXXXXX EG+ C CIT +
Sbjct: 44 RLFGPIKPPD--TRTHPWKVAQFPSTTTAFCKLGCQYFFSYYSNNNTCINQCKYQYRYQATTGYSDSAELAKLECLDGCNIALSICQAGYYCVNGNMTVCPAGKYRESVSDLSLITLEKVHTCINCPYGRYRALDKGRSANDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGSRYCKCITTE 227
BLAST of mRNA_H-paniculata_contig470.11705.1 vs. uniprot
Match: A0A7S2CHA6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CHA6_9STRA) HSP 1 Score: 124 bits (311), Expect = 3.070e-29 Identity = 66/163 (40.49%), Postives = 87/163 (53.37%), Query Frame = 1
Query: 178 RLVGPTKPS------------VELNATYPH--AKAPFPLPFYSFCQLGCSYFFSAS-----PQN-------------TTCKGLCDDVYARNVSVGISDYAEKARLECRDGCDIAVLRCQSGYSCVDGVMSKCAAGTYRNTSYEMVTSCLQCPKGTYREGEKGR 570
RLVGPT+PS + L+ T PH A++P P P+ FCQ+GC+Y+++ PQ + C C+ + +++ G SD AE ARLEC DGC IA LRCQ GYSC +G M+ C GTYR+ Y V C CP G YR+ GR
Sbjct: 142 RLVGPTRPSDSDVYLFGLHETIHLDLTRPHPWARSPEPNPYMKFCQIGCTYYYNQEQWGIYPQREVPSDVVENWNTLSACLARCNHTFRYDITTGYSDIAEMARLECWDGCQIANLRCQPGYSCFNGDMNPCKPGTYRHNEYTRVEQCYDCPNGRYRDAVGGR 304
BLAST of mRNA_H-paniculata_contig470.11705.1 vs. uniprot
Match: A0A7S1ZTF7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZTF7_9STRA) HSP 1 Score: 117 bits (292), Expect = 3.080e-27 Identity = 89/205 (43.41%), Postives = 117/205 (57.07%), Query Frame = 1
Query: 256 FYSFCQLGCSYFFSA--SPQNTT-CKGLCDDVYARNVSVGISDYAEKARLECRDGCDIAVLRCQSGYSC-------------------------VDGVMSKCAAGTYRNTSYEMVTSCLQCPKGTYREGEKGRGVQDCDXXXXXXXXXXXXXXXXXXXXXXXXGLYAELEGTAECSCITADSC----IPEWQNYQ-RNSVPFVGR 771
+Y FC++GC+ FFS+ P + + C CD +Y N++VG +D E +RLECRDGC +A+ RCQ GY C G MS C AG YR+ SY+ + C+ CP G +RE KG+ + XXXXXXXXXXXXXXXXXXXXXXXX A C CIT+DSC +P N + R ++P++GR
Sbjct: 96 YYKFCEVGCTLFFSSISDPMHLSECTHKCDQIYQYNITVGYNDLMEVSRLECRDGCQMALKRCQPGYFCSQVSLLNDDENSTLGPKSHGRDTRYTGGYMSHCPAGKYRDFSYDAIEMCVDCPPGRFREDTKGKSLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFCKCITSDSCKKEQLPSPANSEKRETIPYIGR 300
BLAST of mRNA_H-paniculata_contig470.11705.1 vs. uniprot
Match: A0A7S1FSZ0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FSZ0_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.230e-26 Identity = 99/253 (39.13%), Postives = 135/253 (53.36%), Query Frame = 1
Query: 109 DCAAEYTTSEIMNSSSWSMWDTQRLVGPTKPSVELNATYPHAKA---PFPLPFYSFCQLGCSYFFSASP---QNTTCKGLCDDVYARNVSVGISDYAEKARLECRDGCDIAVLRCQSGYSCVD---------------------GVMSKCAAGTYRNTSYEMVTSCLQCPKGTYREGEKGRGVQDCDXXXXXXXXXXXXXXXXXXXXXXXXGLYAELEGTAECSCITADSC----IPEWQNYQ-RNSVPFVGR 771
+C ++ + +NS+ L T PS H K +P ++ CQLGC+ FFS Q ++C LCDD YA N++V +D E RLECRDGC +A++RCQ GY C+ G M +C G+YR+ SY V +C+ CP G +RE +G ++ XXXXXXXXXXXXXXXXXXXXXXXX + G C CIT +C +P+ + + RN+VP+VGR
Sbjct: 185 ECGSKVNSRSFVNST---------LFLSTLPSNATGEIIVHKKTLSPSYPDQYFRACQLGCTLFFSLRENPKQLSSCLSLCDDKYAYNITVSYNDLMELVRLECRDGCHMALMRCQPGYFCLQPSTTLDDDGKHHLSSTSLPNGGSMHECLPGSYRDVSYHAVDTCVPCPPGRFREETRGLSMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFTTEPGRHVCKCITPQACDKEQLPDPADAEKRNTVPYVGR 428
BLAST of mRNA_H-paniculata_contig470.11705.1 vs. uniprot
Match: A0A7S2SQ56_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQ56_9STRA) HSP 1 Score: 105 bits (262), Expect = 3.290e-22 Identity = 96/232 (41.38%), Postives = 122/232 (52.59%), Query Frame = 1
Query: 175 QRLVGPTKPSVELNATYPHA--KAPFPLPFYSFCQLGCSYFFSAS--PQNTTCKGLCDDVYARNVSVGISDYAEKARLECRDGCDIAVLRCQSGYSC----------VDGV--------MSKCAAGTYRNTSYE----------------MVTSCLQCPKGTYREGEKGRGVQDCDXXXXXXXXXXXXXXXXXXXXXXXXGLYAELEGTAECSCITADSCIPEWQNYQRNSV 756
+R +GPT+PS + Y HA K +P + FC+ GC++F+S P N TCK C YA SVG +D A ARLEC DGCD+A++RC+ GYSC VD M+ C GT+R Y V SC CP G YR+ KG+ XXXXXXXXXXXXXXXXXXXXXXXX A C CIT SC E ++++++ +
Sbjct: 86 RRPIGPTRPSEPRDHPYFHAVGKDAWPNTYAKFCEAGCTFFYSEPEYPSNITCKQRCSSTYAYEGSVGENDMAMVARLECYDGCDLALMRCRPGYSCDWPSTTGLGAVDAAAGWTRTANMTACPLGTWRGVLYNETSGSQTDEDLYSPGISVDSCRDCPSGRYRDFPKGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATCKCITYWSCGDE-ESFKQSPI 316
BLAST of mRNA_H-paniculata_contig470.11705.1 vs. uniprot
Match: K0QZJ0_THAOC (Ephrin_rec_like domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZJ0_THAOC) HSP 1 Score: 98.6 bits (244), Expect = 1.160e-19 Identity = 97/243 (39.92%), Postives = 130/243 (53.50%), Query Frame = 1
Query: 76 LVSATVEQCKLDCAAEYTTSEIMNSSSWSMWDTQRLVGPTKPSVELNATYP-HAKAPFPLPFY-SFCQLGCSYFF----SASPQNTT------CKGLCDDVYA-RNVSVGISDYAEKARLECRDGCDIAVLRCQSGYSC------------VDGVMSKCAAGTYRNTSYEMVTSCLQCPKGTYREGEKGRGVQDCDXXXXXXXXXXXXXXXXXXXXXXXXGLYAELEGTAECSCITADSCIPE 729
+V AT EQC++DC ++ T + W D P + ++ L YP HA A Y +FC+LGC+YFF S P++ + C C++ + + + +D ARLECRDGC +A+ RCQ GY C G M+ C GTYR+ Y V +C+ CP +RE KGR XXXXXXXXXXXXXXXXXXXXXXXX +A + + C+CIT D+C E
Sbjct: 153 VVLATEEQCRIDCNSDDRTP----TRPWHEQD------PLRNALRLTRPYPYHAAADDDERDYPAFCRLGCNYFFVPESSDDPEDESKSTLDQCLERCEEEFEYTSTTPPYNDLVAIARLECRDGCLLALRRCQPGYYCSQVSFRDGNGTYAGGQMTPCPPGTYRDVDYGAVEACVPCPPNHFREDVKGRSASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAS-QPASYCTCITPDACARE 384 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig470.11705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig470.11705.1 >prot_H-paniculata_contig470.11705.1 ID=prot_H-paniculata_contig470.11705.1|Name=mRNA_H-paniculata_contig470.11705.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=212bp MNSSSWSMWDTQRLVGPTKPSVELNATYPHAKAPFPLPFYSFCQLGCSYFback to top mRNA from alignment at H-paniculata_contig470:15890..17704+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig470.11705.1 ID=mRNA_H-paniculata_contig470.11705.1|Name=mRNA_H-paniculata_contig470.11705.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1815bp|location=Sequence derived from alignment at H-paniculata_contig470:15890..17704+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig470:15890..17704+ >mRNA_H-paniculata_contig470.11705.1 ID=mRNA_H-paniculata_contig470.11705.1|Name=mRNA_H-paniculata_contig470.11705.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1272bp|location=Sequence derived from alignment at H-paniculata_contig470:15890..17704+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |