mRNA_H-paniculata_contig47.11701.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47.11701.1
Unique NamemRNA_H-paniculata_contig47.11701.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig47.11701.1 vs. uniprot
Match: A0A6H5JQC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQC7_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 1.990e-71
Identity = 151/266 (56.77%), Postives = 170/266 (63.91%), Query Frame = 1 
Query:    4 AVCGVGFDVVVTTTIRELVPDTPPCTRLNVGGLTQEEARCLLRRCSGLDAQATLPPSADGVVKACGALALSLAIAGSLPAVRCRSDEAAWANLHSILSHKASRLGE-------HRRGNSTGS------------------GASSMAGKTGTGSQWGGSVRSGVSGGNSIPGSGGRGERSSSLSDREREIDAS------PWVSAVLWASLHALPKGHADQYLALVALPACLRGAPAATPSAAGVRGSGGGANVEHLAALWGVPGTGG 708
            A    GFD+VVTT  R+LVPD+P CTRL+VGGL ++EAR LLRRCSGL  QA LPPSADGV+KACGALAL L IAGSLPAVRCRSDEAAWANL+SILSHKA+RLGE       HRRG S  S                  G S +    G    W  +       G +  G G  G   S  S     +         PWV AVLWASLHALP+G+ADQYLAL ALP+CLRGAPA TP A GVRG+ GGA + HL ALWG+PG GG
Sbjct:  692 AASAAGFDLVVTTAFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEAAWANLYSILSHKATRLGESSTCSENHRRGRSNASTPSSXXXXXXXXXXXGTAGGSFLGAFAGGAGAWINATAXXXGSGLAPHGRGAGGHDGSGRSYSGGFVAGXXXXXXXPWVGAVLWASLHALPQGNADQYLALAALPSCLRGAPAVTPLAGGVRGAAGGAGIGHLRALWGIPGVGG 957
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BLAST of mRNA_H-paniculata_contig47.11701.1 vs. uniprot
Match: D8LCK2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK2_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 4.770e-43
Identity = 88/119 (73.95%), Postives = 97/119 (81.51%), Query Frame = 1 
Query:    4 AVCGVGFDVVVTTTIRELVPDTPPCTRLNVGGLTQEEARCLLRRCSGLDAQATLPPSADGVVKACGALALSLAIAGSLPAVRCRSDEAAWANLHSILSHKASRLGE-------HRRGNS 339
            A    GFD+VVTT  R+LVPD+P CTRL+VGGL ++EAR LLRRCSGL  QA LPPSADGV+KACGALAL L IAGSLPAVRCRSDEAAWANL+SILSHKA+RLGE       HRRG S
Sbjct:  776 AASAAGFDLVVTTAFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEAAWANLYSILSHKATRLGESSSCSENHRRGRS 894
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47.11701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQC7_9PHAE1.990e-7156.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCK2_ECTSI4.770e-4373.95Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47contigH-paniculata_contig47:44065..48181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size711
Cds size708
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47.11701.1prot_H-paniculata_contig47.11701.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47 44065..48180 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930398.7275484-CDS-H-paniculata_contig47:44064..441141622930398.7275484-CDS-H-paniculata_contig47:44064..44114Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47 44065..44114 +
1691481273.6281383-CDS-H-paniculata_contig47:44064..441141691481273.6281383-CDS-H-paniculata_contig47:44064..44114Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47 44065..44114 +
1622930398.7448428-CDS-H-paniculata_contig47:44701..448431622930398.7448428-CDS-H-paniculata_contig47:44701..44843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47 44702..44843 +
1691481273.6368623-CDS-H-paniculata_contig47:44701..448431691481273.6368623-CDS-H-paniculata_contig47:44701..44843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47 44702..44843 +
1622930398.7622294-CDS-H-paniculata_contig47:46165..462991622930398.7622294-CDS-H-paniculata_contig47:46165..46299Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47 46166..46299 +
1691481273.6455288-CDS-H-paniculata_contig47:46165..462991691481273.6455288-CDS-H-paniculata_contig47:46165..46299Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47 46166..46299 +
1622930398.7786493-CDS-H-paniculata_contig47:46883..471091622930398.7786493-CDS-H-paniculata_contig47:46883..47109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47 46884..47109 +
1691481273.6542938-CDS-H-paniculata_contig47:46883..471091691481273.6542938-CDS-H-paniculata_contig47:46883..47109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47 46884..47109 +
1622930398.7939122-CDS-H-paniculata_contig47:48024..481801622930398.7939122-CDS-H-paniculata_contig47:48024..48180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47 48025..48180 +
1691481273.6636438-CDS-H-paniculata_contig47:48024..481801691481273.6636438-CDS-H-paniculata_contig47:48024..48180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47 48025..48180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47.11701.1

>prot_H-paniculata_contig47.11701.1 ID=prot_H-paniculata_contig47.11701.1|Name=mRNA_H-paniculata_contig47.11701.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=236bp
GAVCGVGFDVVVTTTIRELVPDTPPCTRLNVGGLTQEEARCLLRRCSGLD
AQATLPPSADGVVKACGALALSLAIAGSLPAVRCRSDEAAWANLHSILSH
KASRLGEHRRGNSTGSGASSMAGKTGTGSQWGGSVRSGVSGGNSIPGSGG
RGERSSSLSDREREIDASPWVSAVLWASLHALPKGHADQYLALVALPACL
RGAPAATPSAAGVRGSGGGANVEHLAALWGVPGTGG
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mRNA from alignment at H-paniculata_contig47:44065..48181+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47.11701.1 ID=mRNA_H-paniculata_contig47.11701.1|Name=mRNA_H-paniculata_contig47.11701.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4117bp|location=Sequence derived from alignment at H-paniculata_contig47:44065..48181+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCGGTGTGTGGGGTGGGCTTCGACGTTGTGGTCACCACTACCATCAG
GTGTGTTGTCGTGCGCCGCGTGGACGTTTATGTAACACTTGCGTCACATT
TTGTAGACGGTAGTGGACGGTAGCAAATAGGATTCATGTACGTGGGCTCC
AACGACGTCGGTAGAGAGCAATTCCAATCATGGGTTACCAGTGACATGCA
GGCTCATCAACGAAAGGTTGCAGTCCACTGGGAAGCACCATGTTGCTTGT
CGATTATTTTTTCCCCAGGGACTGGAGATCTGTCGACAAAATGCTCAAGA
GGTCAATTTGCTACTCTGGTCGATTAAACGTCTAGTCGTTTTCTGCTGAT
TAATTCGTATTTTTCACCAAAGTAGTTGCAGCTCTGGTTCTGCTGGGGTT
TTTTATGTAACTAATGTGGGTGAGGTTCCATTGGCTGTGAAAGCACTCGA
AGTTGGCATTGACGAAATTGCCTCCCCCCATACCATGGTGTGGGACAACG
TCCAAATGTTGGAATACCATGGCTGCAGCGGTGAATTGTCGGACATGTGG
CGTGCAAGGAACGAACGGAACGAATCGCTTATTATGTACGGTTGTGAAAG
CCCCGTGCACTGTTACCTGCTACTACTTCACGCACAGGGAACTCGTGCCG
GACACCCCCCCGTGCACACGGCTGAATGTGGGTGGCCTGACTCAGGAGGA
GGCGCGATGTCTACTTCGACGCTGCAGCGGTCTTGACGCCCAGGCTACCC
TGCCTCCGTCGGCTGATGGTGTTGTCAAGGTACGCATGCAGCTTGAAATA
TATATATTTTTGTTGAGGGGAGTGGACATCCACATATCTTTTTCATTGGG
CGGTCATTAAGGGGGAAATTTTCAGCCTTTTTTTGTTCCCGTCATTTTTT
TGGCGTTGTCGATTTGCGGGCGTTGTCGATTTGCGGGCGTGGTAGATCGA
TACGGGTTCAACGACCAATTTCATAATATCTGTCCTCAAGGGCAACGAGT
GAAGGGCGACCAACGCGCTCTGTGCTAGAGTTCGCGAGCTACAATTACGA
GCATTTTGCTTGCGACATGACCGGAGATGAGCAGTCGAATAACGTCTGCG
GTATGATGTCAGTTCACCACTTCCTCCAATGCAATGGTTGACTCTCCTTT
TTTTTTTTTAAATGCTTCACGGTCTCTGTTGCGCGACTACGCGAGTAAAA
CCAACGGCGGAACTACCGCTGCCCCTAACCGCATCCCCACCCCCCATAGG
CCTAGTGTGTGTCGGCAGAAAGCTCAGATCGCCGTCGTTGACGCCGGTTG
CGAGCCCATCAACTTTAGGCCCATGTCGTGGGCAATCCACGGCGTAACAT
CATCCCCACATTTAGTATGTTGACTCTGTTCATCTCGGCCATCGCACTCG
ACGAGGGTCGTGGAGGTTTTTCGTACATGTTGGAAAAATAATGTAAAAAT
TTAGTCATCCGTTCATCTCTCTTTTCTGTAACTTGAATGAGGCCAATGGG
ACTGTTTCTTCGATATTACGGTTGTGTCGGCCTTCGTCGTGTGGGTTCAG
ATCATTGATCCCAAGTGCATGTCTTTTGGAGTGTCTTGTTGTTCTCATTT
GACTCCTCAATCTCGGAAAAAGATTTTTCCTCACAATATTCTATTCCCTG
TGGTTTACATCTATGTGTAAACTACTCTACAGGTTTCGGGGGGACTCGGT
TCGCGAGGAAAGCCCAGAAACACATTCAGTCCGTTTGATCCCCTCATGGC
AAGCAACAATCCCAACATGGTCGGTCAATAAGCATGATATTTTAAGACCT
CAAAACTCTTCAGAACAGCTTGAATGGCGAAACTGCTTGCTCATTTTATG
CCAGGCATTTACCTGGGACCCCTGTCGTCTTCACGCACTTACTACACGTG
CGAATTATAGCGTTGATACTCCCTTGTGAAAATAGCACTCATATCACACG
AACCCCCGCCCTCCCGTGGATGCGTTGTCAATGATGTAACAACTTCTACA
CGTAAAATAGAAGTATCCCCCCGCCCACCGCTGCGCCCGCCGCCGCCCGC
GCCCTCCACTTTCCTTACCCGTCATAACGCAACTTATTCCGAACTTCGTA
GGCGTGCGGAGCTTTAGCTCTCTCTCTCGCCATCGCCGGCTCTCTCCCGG
CAGTACGCTGCCGCTCTGACGAAGCCGCCTGGGCTAACCTTCATTCGATC
CTCTCTCACAAGGCGTCCAGATTGGGGGAACACCGGTAAGTACTGTAGCG
GGTCCCTTTTGAGTCTGAGTTCTGCTGCACTTGAGCGGAGTCTGGCACCA
AGCCGTTTTAGCCTGGCGTTGTCGGGACAATGCGTTAATGACGTGTTTTT
TGTGACGGAATGCTCATGAGGTCGACAACCTACTTGTTGGATCGTTAGAT
ACGAGTACTTATTGCATACGAAGCGGTGAGGTATTTGCTAGAGAATCCAT
TTCTTGTACTCTTTTCTCTGACGACACGGGAGTGAAAACTCTGTAGAACA
CACCAACAATCCCAAAAAATGAAAAAGAACCGACGATTGACCTCCACATA
TTTTCATGTCGGTATGAAAAACTGTTGCCTGAAAGTAACGGATTAGGCTA
TTCTGCGCTGTTCATGTATTCGGCCGAGTTCAACTAGCCTACTGTGTGGG
GGTGGGTGGGGTAGGTGAGAGTCTGTTCCGTGTCTTGGAAACCATCATGT
AGTGGGATCTTTTCACATCGTTTACACCCAGGGTGGTAAATGGCGTGATG
TGCTCTGGTTTACGACACATGTGGTAGATTGAGTGTACCCCCTCCTTTCT
CTCCACCATCGAACCTCAGACGTGGTAACAGCACGGGGAGCGGAGCTAGT
TCAATGGCGGGCAAGACGGGAACCGGTTCTCAATGGGGAGGTTCAGTTCG
GAGTGGCGTTTCCGGAGGAAACAGCATTCCTGGCTCGGGGGGCCGAGGTG
AAAGGTCATCATCATTATCGGACAGAGAAAGAGAGATCGATGCTTCTCCG
TGGGTTAGCGCGGTACTGTGGGCTAGCTTGCATGCCCTTCCGAAGGTATG
TCACGGGTGGTGCCGTATGAATGAGAACCGAACCTTCACCAGTAGTTAGT
GTACGACAGACCGAAATTTGCATGTATTCGCCTCGGGGTCCAGTATGAAC
GCATTCGTTTTTTGTGATACCTGGAGCCACTTATGACTGCCGAAAAGAGT
ACAAACAAACATGGGCGGACACTTGGTACTTCGTGCTCGTTGTTTACCCC
CCAAATATTCATGTTTATTCAGGGGCTGAAATACTCCAGTTTTCATTCGA
CTTTGGATCTCTAGTGTGTCGGGTGCAATAGGCAAAGAATCTAAAGGACG
GAATAGACGTGTGCCGCTGTTTCTGTAACCGGTGTCCTGAGCCGTGCGTT
CACGAAGAGAGAGGACCAGAAGGTCACGAGGATATGCTGTTTTCCAATGC
GTGTACGAGTATAGTGTAACCAGAGAGGGTCTACACATGGAGTTCATGTT
TGAGCTCTTCATTATATTCGTTTTTTTTCCGGCGGTGTAATAATACACCG
TCGTATCTAGGCAAGTGAAAACATTTGTCTTGTAAAAATCTTGCTCCACC
AAGTAAGAAAAACAAAACATGCAATCCGAACGACCTCCGCCTCCGCCTTC
GCAGATCCAACTCTGTTTTTCCGAGGTTGACATCTTGTTTTGATGTGTTG
GACAGCTGTGGGAACTGTTGGAGAATGGTCCATATCACCCCTATGTTGTA
ATTTTGTTGTTGAATGTATAGAACTTCATGTTGAAGTCGGGCGCACTACC
TACTCCAACATGAGAACAATTGAATTTACATGACTGTGGTACTGTTGGTT
TACGATAGCAATGATGAGATTTTGAGTTTTTGTTAGTTGGATGAGTTGTT
TTTAGTGTCCGTACCCATCCTCCCCCTTGGACGCCACTCCTTCCCCCGAA
CTTGAGAAAGGGCCACGCAGATCAGTATCTAGCCCTCGTGGCCCTGCCCG
CATGCCTACGAGGTGCCCCAGCTGCTACTCCGTCGGCAGCGGGTGTTCGT
GGATCCGGTGGAGGGGCCAATGTTGAGCACCTTGCGGCCCTCTGGGGGGT
GCCGGGCACCGGCGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig47:44065..48181+

>mRNA_H-paniculata_contig47.11701.1 ID=mRNA_H-paniculata_contig47.11701.1|Name=mRNA_H-paniculata_contig47.11701.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at H-paniculata_contig47:44065..48181+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCGGTGTGTGGGGTGGGCTTCGACGTTGTGGTCACCACTACCATCAG
GGGGCGGTGTGTGGGGTGGGCTTCGACGTTGTGGTCACCACTACCATCAG
GGAACTCGTGCCGGACACCCCCCCGTGCACACGGCTGAATGTGGGTGGCC
TGACTCAGGAGGAGGCGCGATGTCTACTTCGACGCTGCAGCGGTCTTGAC
GCCCAGGCTACCCTGCCTCCGTCGGCTGATGGTGTTGTCAAGGGAACTCG
TGCCGGACACCCCCCCGTGCACACGGCTGAATGTGGGTGGCCTGACTCAG
GAGGAGGCGCGATGTCTACTTCGACGCTGCAGCGGTCTTGACGCCCAGGC
TACCCTGCCTCCGTCGGCTGATGGTGTTGTCAAGGCGTGCGGAGCTTTAG
CTCTCTCTCTCGCCATCGCCGGCTCTCTCCCGGCAGTACGCTGCCGCTCT
GACGAAGCCGCCTGGGCTAACCTTCATTCGATCCTCTCTCACAAGGCGTC
CAGATTGGGGGAACACCGGCGTGCGGAGCTTTAGCTCTCTCTCTCGCCAT
CGCCGGCTCTCTCCCGGCAGTACGCTGCCGCTCTGACGAAGCCGCCTGGG
CTAACCTTCATTCGATCCTCTCTCACAAGGCGTCCAGATTGGGGGAACAC
CGACGTGGTAACAGCACGGGGAGCGGAGCTAGTTCAATGGCGGGCAAGAC
GGGAACCGGTTCTCAATGGGGAGGTTCAGTTCGGAGTGGCGTTTCCGGAG
GAAACAGCATTCCTGGCTCGGGGGGCCGAGGTGAAAGGTCATCATCATTA
TCGGACAGAGAAAGAGAGATCGATGCTTCTCCGTGGGTTAGCGCGGTACT
GTGGGCTAGCTTGCATGCCCTTCCGAAGACGTGGTAACAGCACGGGGAGC
GGAGCTAGTTCAATGGCGGGCAAGACGGGAACCGGTTCTCAATGGGGAGG
TTCAGTTCGGAGTGGCGTTTCCGGAGGAAACAGCATTCCTGGCTCGGGGG
GCCGAGGTGAAAGGTCATCATCATTATCGGACAGAGAAAGAGAGATCGAT
GCTTCTCCGTGGGTTAGCGCGGTACTGTGGGCTAGCTTGCATGCCCTTCC
GAAGGGCCACGCAGATCAGTATCTAGCCCTCGTGGCCCTGCCCGCATGCC
TACGAGGTGCCCCAGCTGCTACTCCGTCGGCAGCGGGTGTTCGTGGATCC
GGTGGAGGGGCCAATGTTGAGCACCTTGCGGCCCTCTGGGGGGTGCCGGG
CACCGGCGGGGGCCACGCAGATCAGTATCTAGCCCTCGTGGCCCTGCCCG
CATGCCTACGAGGTGCCCCAGCTGCTACTCCGTCGGCAGCGGGTGTTCGT
GGATCCGGTGGAGGGGCCAATGTTGAGCACCTTGCGGCCCTCTGGGGGGT
GCCGGGCACCGGCGGG
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