mRNA_H-paniculata_contig47.11698.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47.11698.1
Unique NamemRNA_H-paniculata_contig47.11698.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig47.11698.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.120e-38
Identity = 67/162 (41.36%), Postives = 108/162 (66.67%), Query Frame = 1 
Query:   13 QYGVAVSGGAELMDLRTKAHHQLGHGLIALDCTNAFNSVKRAAILEEVGIRIPGLTPFVAICYGEKPTGIIFQMDTGERRKISSNTGIHQGDGLGPTFFCMPVGPILLKCREQFEALGVELLAYLDDLVLAMGEVMEESSRAINFLVQELAHIGVQINNEKT 498
            Q+GVAV+GG E + +  +  HQ G+ +I  DC+NAFN+ KR AI+ +    +P L  ++A CY E P   +++MD+GERR +   +G+ QGDG+GP  F + + PI+LK +++++ LGV   AY+DD+ L + ++ EES +A+  LV ELA +G+ +N  K+
Sbjct:  651 QFGVAVAGGVERVAMEAQLVHQTGNWIIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCYDEIPATAVYEMDSGERRTLECTSGVQQGDGMGPPLFSLILIPIILKLQDKYKPLGVAFKAYMDDITLHLKDLTEESVQAMTDLVDELAEVGIVVNRAKS 812
[Close]
BLAST of mRNA_H-paniculata_contig47.11698.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 1.930e-37
Identity = 68/162 (41.98%), Postives = 100/162 (61.73%), Query Frame = 1 
Query:   13 QYGVAVSGGAELMDLRTKAHHQLGHGLIALDCTNAFNSVKRAAILEEVGIRIPGLTPFVAICYGEKPTGIIFQMDTGERRKISSNTGIHQGDGLGPTFFCMPVGPILLKCREQFEALGVELLAYLDDLVLAMGEVMEESSRAINFLVQELAHIGVQINNEKT 498
            Q+GVAV+GG E + +  +  HQ GH ++  DC+NAFN+ KR AI+ +    +P L  ++A CY E P   I+ MD+G RR I    G+ QGDG+GP  FC  + PI+LK R +++ LGV L AY+DD+ L    +  E+ + I  LV EL  +G+ +N  K+
Sbjct:  203 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGARRTIECKGGVQQGDGMGPPLFCFILVPIILKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKS 364
[Close]
BLAST of mRNA_H-paniculata_contig47.11698.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 2.390e-37
Identity = 69/163 (42.33%), Postives = 103/163 (63.19%), Query Frame = 1 
Query:   13 QYGVAVSGGAELMDLRTKAHHQLGHGLIALDCTNAFNSVKRAAILEEVGIRIPGLTPFVAICYGEKPTGIIFQMDTGERRKISSNTGIHQGDGLGPTFFCMPVGPILLKCREQFEALGVELLAYLDDLV-LAMGEVMEESSRAINFLVQELAHIGVQINNEKT 498
            Q+GVAV+GG E + +  +  HQ GH ++  DC+NAFN+ KR AI+ +    +P L  ++A CY E P   I+ MD+GERR I   +G+ QGDG+GP  FC  + PI+LK R +++ LGV L AY+DD++ L    +  E+ + I  LV EL  +G+ +N  K+
Sbjct:  112 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDIISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKS 274
[Close]
BLAST of mRNA_H-paniculata_contig47.11698.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 3.030e-37
Identity = 69/162 (42.59%), Postives = 102/162 (62.96%), Query Frame = 1 
Query:   13 QYGVAVSGGAELMDLRTKAHHQLGHGLIALDCTNAFNSVKRAAILEEVGIRIPGLTPFVAICYGEKPTGIIFQMDTGERRKISSNTGIHQGDGLGPTFFCMPVGPILLKCREQFEALGVELLAYLDDLVLAMGEVMEESSRAINFLVQELAHIGVQINNEKT 498
            Q+GVAV+GG E + +  +  HQ GH ++  DC+NAFN+ KR AI+ +    +P L  ++A CY E P   I+ MD+GERR I   +G+ QGDG+GP  FC  + PI+LK R +++ LGV L AY+DD+ L    +  E+ + I  LV EL  +G+ +N  K+
Sbjct:  502 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKS 663
[Close]
BLAST of mRNA_H-paniculata_contig47.11698.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 3.230e-37
Identity = 69/162 (42.59%), Postives = 102/162 (62.96%), Query Frame = 1 
Query:   13 QYGVAVSGGAELMDLRTKAHHQLGHGLIALDCTNAFNSVKRAAILEEVGIRIPGLTPFVAICYGEKPTGIIFQMDTGERRKISSNTGIHQGDGLGPTFFCMPVGPILLKCREQFEALGVELLAYLDDLVLAMGEVMEESSRAINFLVQELAHIGVQINNEKT 498
            Q+GVAV+GG E + +  +  HQ GH ++  DC+NAFN+ KR AI+ +    +P L  ++A CY E P   I+ MD+GERR I   +G+ QGDG+GP  FC  + PI+LK R +++ LGV L AY+DD+ L    +  E+ + I  LV EL  +G+ +N  K+
Sbjct:  481 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKS 642
[Close]
BLAST of mRNA_H-paniculata_contig47.11698.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 6.770e-37
Identity = 68/162 (41.98%), Postives = 102/162 (62.96%), Query Frame = 1 
Query:   13 QYGVAVSGGAELMDLRTKAHHQLGHGLIALDCTNAFNSVKRAAILEEVGIRIPGLTPFVAICYGEKPTGIIFQMDTGERRKISSNTGIHQGDGLGPTFFCMPVGPILLKCREQFEALGVELLAYLDDLVLAMGEVMEESSRAINFLVQELAHIGVQINNEKT 498
            Q+GVAV+GG E + +  +  HQ GH ++  DC+NAFN+ KR AI+ +    +P L  ++A CY E P   I+ MD+GERR I   +G+ QGDG+GP  FC  + PI+LK R +++ LGV L AY+DD+ L   ++  E+ +    LV EL  +G+ +N  K+
Sbjct:  480 QFGVAVAGGVEQVAIDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKDITAENIQVTPDLVDELEAVGIIVNRGKS 641
[Close]
BLAST of mRNA_H-paniculata_contig47.11698.1 vs. uniprot
Match: A0A6H5KDD0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD0_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 4.320e-36
Identity = 67/162 (41.36%), Postives = 100/162 (61.73%), Query Frame = 1 
Query:   13 QYGVAVSGGAELMDLRTKAHHQLGHGLIALDCTNAFNSVKRAAILEEVGIRIPGLTPFVAICYGEKPTGIIFQMDTGERRKISSNTGIHQGDGLGPTFFCMPVGPILLKCREQFEALGVELLAYLDDLVLAMGEVMEESSRAINFLVQELAHIGVQINNEKT 498
            Q+GVAV+GG E + +  +  HQ GH ++  DC+NAFN+ KR AI+ +    +P L  ++A CY E     I+ MD+GERR I   +G+ QGDG+GP  F   + PI+LK R +++ LGV L AY+DD+ L    +  E+ + I  LV EL  +G+ +N  K+
Sbjct:   69 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAKAAKSVPNLVGYIARCYDEISAKSIYAMDSGERRTIECKSGVQQGDGMGPPLFFFILFPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKS 230
[Close]
BLAST of mRNA_H-paniculata_contig47.11698.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 5.040e-36
Identity = 67/162 (41.36%), Postives = 100/162 (61.73%), Query Frame = 1 
Query:   13 QYGVAVSGGAELMDLRTKAHHQLGHGLIALDCTNAFNSVKRAAILEEVGIRIPGLTPFVAICYGEKPTGIIFQMDTGERRKISSNTGIHQGDGLGPTFFCMPVGPILLKCREQFEALGVELLAYLDDLVLAMGEVMEESSRAINFLVQELAHIGVQINNEKT 498
            Q+G AV GG E + +  +  HQ GH ++  DC+NAFN+ KR AI+ +    +P L  ++A CY E P   I+ MD+GERR I   +G+ QGDG+GP  FC  + PI+LK R +++ LGV L AY+DD+ L    +  E+ + I  +V EL  +G+ +N  K+
Sbjct:   28 QFGAAVVGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDVVDELEAVGIIVNRGKS 189
[Close]
BLAST of mRNA_H-paniculata_contig47.11698.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 8.540e-36
Identity = 61/139 (43.88%), Postives = 89/139 (64.03%), Query Frame = 1 
Query:   13 QYGVAVSGGAELMDLRTKAHHQLGHGLIALDCTNAFNSVKRAAILEEVGIRIPGLTPFVAICYGEKPTGIIFQMDTGERRKISSNTGIHQGDGLGPTFFCMPVGPILLKCREQFEALGVELLAYLDDLVLAMGEVMEES 429
            Q+GVAV+GG E + +  +  HQ GH ++  DC+NAFN+ KR AI+ +    +P L  ++A CY E P   I+ MD+GERR I   +G+ QGDG+GP  FC  + PI+LK R +++ LGV L AY+DD+ L    +  E+
Sbjct:  113 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAEN 251
[Close]
BLAST of mRNA_H-paniculata_contig47.11698.1 vs. uniprot
Match: A0A6H5KUZ8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ8_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 6.750e-33
Identity = 64/160 (40.00%), Postives = 96/160 (60.00%), Query Frame = 1 
Query:   13 QYGVAVSGGAELMDLRTKAHHQLGHGLIALDCTNAFNSVKRAAILEEVGIRIPGLTPFVAICYGEKPTGIIFQMDTGERRKISSNTGIHQGDGLGPTFFCMPVGPILLKCREQFEALGVELLAYLDDLVLAMGEVMEESSRAINFLVQELAHIGVQINNE 492
            Q+GVAV+GG E + +  +  HQ GH ++  DC+NAFN+ KR AI+ +    +P L  ++A CY E P   I+ MD+GERR I   +G+ QGDG+GP   C  + PI+LK R +++ LGV L AY+DD+ L    +  E+ +A     +    +GV I  +
Sbjct:   69 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLSCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQAYRLRRRASQFLGVLIGTD 228
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47.11698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH58_9PHAE1.120e-3841.36Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KR59_9PHAE1.930e-3741.98Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LL14_9PHAE2.390e-3742.33Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JI32_9PHAE3.030e-3742.59Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE3.230e-3742.59Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKQ2_9PHAE6.770e-3741.98Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDD0_9PHAE4.320e-3641.36Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KYJ9_9PHAE5.040e-3641.36Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L4Y4_9PHAE8.540e-3643.88Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KUZ8_9PHAE6.750e-3340.00Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47contigH-paniculata_contig47:22058..22558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score75.1
Seed ortholog evalue3.5e-11
Seed eggNOG ortholog400682.PAC_15701845
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39QPF@33154,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930398.9810457-CDS-H-paniculata_contig47:22057..225581622930398.9810457-CDS-H-paniculata_contig47:22057..22558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47 22058..22558 +
1691481273.7821767-CDS-H-paniculata_contig47:22057..225581691481273.7821767-CDS-H-paniculata_contig47:22057..22558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47 22058..22558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47.11698.1prot_H-paniculata_contig47.11698.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47 22058..22558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47.11698.1

>prot_H-paniculata_contig47.11698.1 ID=prot_H-paniculata_contig47.11698.1|Name=mRNA_H-paniculata_contig47.11698.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp
LSERQYGVAVSGGAELMDLRTKAHHQLGHGLIALDCTNAFNSVKRAAILE
EVGIRIPGLTPFVAICYGEKPTGIIFQMDTGERRKISSNTGIHQGDGLGP
TFFCMPVGPILLKCREQFEALGVELLAYLDDLVLAMGEVMEESSRAINFL
VQELAHIGVQINNEKTK
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mRNA from alignment at H-paniculata_contig47:22058..22558+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47.11698.1 ID=mRNA_H-paniculata_contig47.11698.1|Name=mRNA_H-paniculata_contig47.11698.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=501bp|location=Sequence derived from alignment at H-paniculata_contig47:22058..22558+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTATCGGAGCGGCAATACGGGGTAGCGGTTTCGGGTGGCGCGGAGCTCAT
GGACCTCCGCACGAAAGCACACCACCAATTGGGACATGGGCTTATCGCCC
TCGACTGTACCAATGCATTCAACTCCGTCAAGCGGGCGGCGATCTTGGAA
GAGGTGGGAATCCGCATCCCAGGGCTGACACCTTTCGTAGCCATATGCTA
TGGGGAGAAGCCGACAGGCATCATTTTCCAGATGGACACCGGTGAACGCA
GGAAAATATCCTCGAACACGGGAATCCACCAGGGTGACGGACTGGGACCC
ACCTTCTTCTGCATGCCCGTGGGACCGATCTTGCTCAAGTGCCGAGAACA
ATTCGAGGCTCTGGGGGTGGAGCTATTGGCCTACCTGGACGATCTGGTGC
TGGCAATGGGGGAGGTGATGGAAGAAAGCTCACGGGCAATCAATTTCCTC
GTGCAAGAGCTAGCACATATAGGAGTGCAAATTAATAACGAGAAGACGAA
G
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Coding sequence (CDS) from alignment at H-paniculata_contig47:22058..22558+

>mRNA_H-paniculata_contig47.11698.1 ID=mRNA_H-paniculata_contig47.11698.1|Name=mRNA_H-paniculata_contig47.11698.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig47:22058..22558+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTATCGGAGCGGCAATACGGGGTAGCGGTTTCGGGTGGCGCGGAGCTCAT
GGACCTCCGCACGAAAGCACACCACCAATTGGGACATGGGCTTATCGCCC
TCGACTGTACCAATGCATTCAACTCCGTCAAGCGGGCGGCGATCTTGGAA
GAGGTGGGAATCCGCATCCCAGGGCTGACACCTTTCGTAGCCATATGCTA
TGGGGAGAAGCCGACAGGCATCATTTTCCAGATGGACACCGGTGAACGCA
GGAAAATATCCTCGAACACGGGAATCCACCAGGGTGACGGACTGGGACCC
ACCTTCTTCTGCATGCCCGTGGGACCGATCTTGCTCAAGTGCCGAGAACA
ATTCGAGGCTCTGGGGGTGGAGCTATTGGCCTACCTGGACGATCTGGTGC
TGGCAATGGGGGAGGTGATGGAAGAAAGCTCACGGGCAATCAATTTCCTC
GTGCAAGAGCTAGCACATATAGGAGTGCAAATTAATAACGAGAAGACGAA
GTTATCGGAGCGGCAATACGGGGTAGCGGTTTCGGGTGGCGCGGAGCTCA
TGGACCTCCGCACGAAAGCACACCACCAATTGGGACATGGGCTTATCGCC
CTCGACTGTACCAATGCATTCAACTCCGTCAAGCGGGCGGCGATCTTGGA
AGAGGTGGGAATCCGCATCCCAGGGCTGACACCTTTCGTAGCCATATGCT
ATGGGGAGAAGCCGACAGGCATCATTTTCCAGATGGACACCGGTGAACGC
AGGAAAATATCCTCGAACACGGGAATCCACCAGGGTGACGGACTGGGACC
CACCTTCTTCTGCATGCCCGTGGGACCGATCTTGCTCAAGTGCCGAGAAC
AATTCGAGGCTCTGGGGGTGGAGCTATTGGCCTACCTGGACGATCTGGTG
CTGGCAATGGGGGAGGTGATGGAAGAAAGCTCACGGGCAATCAATTTCCT
CGTGCAAGAGCTAGCACATATAGGAGTGCAAATTAATAACGAGAAGACGA
AG
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