mRNA_H-paniculata_contig46936.11683.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46936.11683.1
Unique NamemRNA_H-paniculata_contig46936.11683.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46936.11683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46936contigH-paniculata_contig46936:449..1145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size276
Cds size171
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46936.11683.1prot_H-paniculata_contig46936.11683.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46936 449..1041 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930397.2416341-CDS-H-paniculata_contig46936:448..5501622930397.2416341-CDS-H-paniculata_contig46936:448..550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46936 449..550 -
1691481273.0480506-CDS-H-paniculata_contig46936:448..5501691481273.0480506-CDS-H-paniculata_contig46936:448..550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46936 449..550 -
1622930397.2592225-CDS-H-paniculata_contig46936:972..10411622930397.2592225-CDS-H-paniculata_contig46936:972..1041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46936 973..1041 -
1691481273.070224-CDS-H-paniculata_contig46936:972..10411691481273.070224-CDS-H-paniculata_contig46936:972..1041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46936 973..1041 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930397.275182-UTR-H-paniculata_contig46936:1041..11451622930397.275182-UTR-H-paniculata_contig46936:1041..1145Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46936 1042..1145 -
1691481273.0816326-UTR-H-paniculata_contig46936:1041..11451691481273.0816326-UTR-H-paniculata_contig46936:1041..1145Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46936 1042..1145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46936.11683.1

>prot_H-paniculata_contig46936.11683.1 ID=prot_H-paniculata_contig46936.11683.1|Name=mRNA_H-paniculata_contig46936.11683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
MHTMEEVKNVVEETQKTTSEMAAVHSDADNEVLEEIREELRKLQSSMHTM
EEVKNVV
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mRNA from alignment at H-paniculata_contig46936:449..1145-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46936.11683.1 ID=mRNA_H-paniculata_contig46936.11683.1|Name=mRNA_H-paniculata_contig46936.11683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=697bp|location=Sequence derived from alignment at H-paniculata_contig46936:449..1145- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGACGTCAGCACTCTCTCGCTCCTGATTATGACAGGTCCACAGTGATGCA
GATAATGAGGTGTTGGAGGAGATTAGGGAGGAGCTGAGAAAACTCCAATC
TTCCATGCACACCATGGAAGAAGTCAAGAACGTTGTAGAGGAGACGCAAA
AGACTACGTCGGAGATGGCGGCGGTAAGGAAGTTTCGTACCCAGGTTCTT
TGTTTGCGTATTCGATGTGCTTCTTCGAGTGCGGCAGCGAAAGCGCACGG
TAAAACCGTTTGCTGTGGTTATTAGTACCCCGCCAGTGATGAACAAATGT
ATGCATGTCTCCTTGGTGGCGAAGAGACTGTCGAACTCTCTTTTACTAGC
CTTTCAAACAAGCGTGGCACGTTTACCTAATGAAGGGGCTACCTAATGAA
GGCGGGCTTAAACTTCCATGCTCACTGCCACAATGTTGAACATTTTACCA
GATTGAAGACGCTTGGTGTGCCCGCTCAGCACGGTTCAAGTAACTCTTGA
AAAAACAAGTCTCTGGTTTCGTTGCTTGACTGGGTCATTCGCCCTTCAAG
CCATCTTGTCTGACGTCAGCACTCTCTCGCTCCTGATTATGACAGGTCCA
CAGTGATGCAGATAATGAGGTTTTGGAGGAGATTAGGGAGGAGCTGAGAA
AACTCCAATCTTCCATGCACACCATGGAAGAAGTCAAGAACGTTGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig46936:449..1145-

>mRNA_H-paniculata_contig46936.11683.1 ID=mRNA_H-paniculata_contig46936.11683.1|Name=mRNA_H-paniculata_contig46936.11683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig46936:449..1145- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACACCATGGAAGAAGTCAAGAACGTTGTAGAGGAGACGCAAAAGAC
TACGTCGGAGATGGCGGCGATGCACACCATGGAAGAAGTCAAGAACGTTG
TAGAGGAGACGCAAAAGACTACGTCGGAGATGGCGGCGGTCCACAGTGAT
GCAGATAATGAGGTTTTGGAGGAGATTAGGGAGGAGCTGAGAAAACTCCA
ATCTTCCATGCACACCATGGAAGAAGTCAAGAACGTTGTAGTCCACAGTG
ATGCAGATAATGAGGTTTTGGAGGAGATTAGGGAGGAGCTGAGAAAACTC
CAATCTTCCATGCACACCATGGAAGAAGTCAAGAACGTTGTA
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