mRNA_H-paniculata_contig46854.11667.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig46854.11667.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA) HSP 1 Score: 182 bits (462), Expect = 1.460e-49 Identity = 102/251 (40.64%), Postives = 148/251 (58.96%), Query Frame = 1
Query: 1 MSTLRTVFSLVIERDFELEGMDVDAAYLNAPVEEELFVKLPPDFSSLSRDI-PFVRRLRKSLYGLKQSGRNWNNALDDFLVGIGLDRSIANSCLYFSRDDGGETNVPVVVYVDDLFIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGSYIREVQKIYGFNECRGVPTPVEGKVKISAPESADKPSEQKGMVGSLMYASTGTRPDVAYVVHQTARRMEDPCREEFSKCKRIFR 747
M+T+R V +L D EL+ MDVD AYL + +EE++++K PP + + V RLRKSLYGLKQSGRNW+ +D + G GL S A+ CLY GE V +V+YVDDL I R D+FK +IS+ F MKDL L +LG+ ++R+R N T+ IS YI + +G +C+ V TP+EG + + +E +VGSL+YA+ TRPD+A+ V + ++ +E + KR+ R
Sbjct: 284 MTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEILV-IVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNKEHWIAAKRVLR 533
BLAST of mRNA_H-paniculata_contig46854.11667.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA) HSP 1 Score: 176 bits (445), Expect = 9.110e-49 Identity = 101/251 (40.24%), Postives = 145/251 (57.77%), Query Frame = 1
Query: 1 MSTLRTVFSLVIERDFELEGMDVDAAYLNAPVEEELFVKLPPDFSSL-SRDIPFVRRLRKSLYGLKQSGRNWNNALDDFLVGIGLDRSIANSCLYFSRDDGGETNVPVVVYVDDLFIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGSYIREVQKIYGFNECRGVPTPVEGKVKISAPESADKPSEQKGMVGSLMYASTGTRPDVAYVVHQTARRMEDPCREEFSKCKRIFR 747
++T+R V +L D EL+ MDV+ AYL + +EE+++VK PP + S V RLRKSLYGLKQSGRNW+ +D + G G S A+ CLY GE V +V+YVDDL I RE V +FKH IS+ F MKDL L +LG+ ++RDR + IS +YI + + +C+ V TP+EG + + +E +VGSL+YA+ TRPD+A+ V + ++ E + KR+ R
Sbjct: 64 ITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILV-IVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLR 313
BLAST of mRNA_H-paniculata_contig46854.11667.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU) HSP 1 Score: 177 bits (449), Expect = 4.350e-47 Identity = 105/261 (40.23%), Postives = 150/261 (57.47%), Query Frame = 1
Query: 1 MSTLRTVFSLVIERDFELEGMDVDAAYLNAPVEEELFVKLPPDFSSLSRDIPFVRRLRKSLYGLKQSGRNWNNALDDFLVGIGLDRSIANSCLYFSRDDGGETNVPVVVYVDDLFIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGSYIREVQKIYGFNECRGVPTPVEGKVKISAPESADKPS-----------EQKGMVGSLMYASTGTRPDVAYVVHQTARRMEDPCREEFSKCKRIFR 747
+ ++R + +L D EL+ MDV AAYLN ++EEL++ +PPD ++ + RL++SLYGLKQ+GR WN LD L G+G +R + +CLY RDD G+ +VVYVDDL +A R +DE K ++ +F+M+DLG S +LGI +RRDRP I +S YI V YG +C+ TP+ VK SA + D + ++GS+MYA GTRPD+AY+V R +P R + KR R
Sbjct: 1073 LESVRIILALAARYDLELDQMDVSAAYLNGELDEELYL-MPPD--GVAIEPGHCWRLKRSLYGLKQAGRTWNKTLDRKLTGLGFNRLDSETCLYVFRDDKGQLCF-LVVYVDDLLLAATSRAFMDEVKRKLTAQFKMRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVKPSADDPEDNTTLHSITIEGRSVSYASVIGSMMYAMMGTRPDIAYLVGVLGRYSANPKRCHWEMAKRGLR 1329
BLAST of mRNA_H-paniculata_contig46854.11667.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA) HSP 1 Score: 167 bits (422), Expect = 7.840e-47 Identity = 97/229 (42.36%), Postives = 138/229 (60.26%), Query Frame = 1
Query: 1 MSTLRTVFSLVIERDFELEGMDVDAAYLNAPVEEELFVKLPPDFSSLSRD-IPFVRRLRKSLYGLKQSGRNWNNALDDFLVGIGLDRSIANSCLYFSRDDGGETNVPVVVYVDDLFIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGSYIREVQKIYGFNECRGVPTPVEGKVKISAPESADKPS-EQKGMVGSLMYASTGTRPDVAYVV 678
++T+R + ++ D EL+ MDVD AYL + +EE+++VK PP + + V RLRKSLYGLKQSGRNW+ +D + G G S A+ CLY GE V +V+YVDDL IAG R+ VD+FK IS+ MKDL L +LG+ ++R+R + IS +YI + + +C+ V TP+EG + DKP E +VGSL+YA+ TRPD+A+ V
Sbjct: 64 ITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEMLV-IVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRNREKRFMEISQTAYIDMMLAKFKMADCKPVLTPMEG-ILTKMNGEGDKPDREYMKLVGSLLYAALVTRPDIAFAV 290
BLAST of mRNA_H-paniculata_contig46854.11667.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA) HSP 1 Score: 175 bits (444), Expect = 1.620e-46 Identity = 99/251 (39.44%), Postives = 146/251 (58.17%), Query Frame = 1
Query: 1 MSTLRTVFSLVIERDFELEGMDVDAAYLNAPVEEELFVKLPPDFSSL-SRDIPFVRRLRKSLYGLKQSGRNWNNALDDFLVGIGLDRSIANSCLYFSRDDGGETNVPVVVYVDDLFIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGSYIREVQKIYGFNECRGVPTPVEGKVKISAPESADKPSEQKGMVGSLMYASTGTRPDVAYVVHQTARRMEDPCREEFSKCKRIFR 747
++T+R + ++ D EL+ MDV+ AYL + +EE+++VK P + S V RLRKSLYGLKQSGRNW+ +D + G G S A+ CLY GE V +V+YVDDL I RE V++FKH IS+ F MKDL L +LG+ ++RDR + IS +YI + +G +C+ V TP+EG + + +E +VGSL+YA+ TRPD+A+ V + ++ E + KR+ R
Sbjct: 504 ITTIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILV-IVLYVDDLIITSNSREMVNKFKHAISREFSMKDLKELDWILGMAIKRDREKRVMEISQTAYIDMMLAKFGMADCKPVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLR 753
BLAST of mRNA_H-paniculata_contig46854.11667.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA) HSP 1 Score: 175 bits (443), Expect = 2.390e-46 Identity = 100/251 (39.84%), Postives = 146/251 (58.17%), Query Frame = 1
Query: 1 MSTLRTVFSLVIERDFELEGMDVDAAYLNAPVEEELFVKLPPDFSSLSRD-IPFVRRLRKSLYGLKQSGRNWNNALDDFLVGIGLDRSIANSCLYFSRDDGGETNVPVVVYVDDLFIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGSYIREVQKIYGFNECRGVPTPVEGKVKISAPESADKPSEQKGMVGSLMYASTGTRPDVAYVVHQTARRMEDPCREEFSKCKRIFR 747
++T+R + ++ D EL+ MDV+ AYL + +EE+++VK P + + V RLRKSLYGLKQSGRNW+ +D + G G S A+ CLY GE V +V+YVDDL I RE VD+FK IS+ F MKDL L +LG+ ++R+R + IS +YI V +G +CR V TP+EG + + A +E +VGSL+YA+ TRPD+A+ V + ++ E + KR+ R
Sbjct: 293 ITTIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGLNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEMLV-IVLYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGMADCRPVLTPMEGTLTKMDGKDAKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLR 542
BLAST of mRNA_H-paniculata_contig46854.11667.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA) HSP 1 Score: 174 bits (441), Expect = 4.560e-46 Identity = 101/251 (40.24%), Postives = 143/251 (56.97%), Query Frame = 1
Query: 1 MSTLRTVFSLVIERDFELEGMDVDAAYLNAPVEEELFVKLPPDFSSLSRDI-PFVRRLRKSLYGLKQSGRNWNNALDDFLVGIGLDRSIANSCLYFSRDDGGETNVPVVVYVDDLFIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGSYIREVQKIYGFNECRGVPTPVEGKVKISAPESADKPSEQKGMVGSLMYASTGTRPDVAYVVHQTARRMEDPCREEFSKCKRIFR 747
M+T+R V +L D EL+ MDVD AYL + +EE++++K P + + V RLRKSLYGLKQSGRNW+ +D + G G S A+ CLY GE V VV+YVDDL IA R D+FK IS+ F MKDL L +LG+ ++R+R + IS YI + +G +C+ V TP+EG + + SE +VGSL+YA+ TRPD+A+ V + ++ E + KR+ R
Sbjct: 582 MTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPHGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEMLV-VVLYVDDLIIASNSRTMADKFKQAISREFSMKDLKELDWILGMAIKRNREKRIMEISQTGYIDMMLNKFGMTDCKPVLTPMEGTLTKMDGKDVKPDSEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLR 831
BLAST of mRNA_H-paniculata_contig46854.11667.1 vs. uniprot
Match: A0A146H3U8_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H3U8_MYCCL) HSP 1 Score: 168 bits (425), Expect = 1.600e-45 Identity = 98/257 (38.13%), Postives = 148/257 (57.59%), Query Frame = 1
Query: 1 MSTLRTVFSLVIERDFELEGMDVDAAYLNAPVEEELFVKLPPDFSSLSRDIPFVRRLRKSLYGLKQSGRNWNNALDDFLVGIGLDRSIANSCLYFSRDDGGETNVPVVVYVDDLFI-AGRREKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGSYIREVQKIYGFNECRGVPTPV--EGKVKI------SAPESADKPSEQKGMVGSLMYASTGTRPDVAYVVHQTARRMEDPCREEFSKCKRIF 744
+ +LR +L + E+ MD+ AYLN ++EE+F++ PP F + V RL+KSLYGL QSGR WN D + IGL ++ A++C+Y+ DG V V V+VDDL I A +++ + K + F MKDLG +++GIEV RDR GT+T+S YI + YGF++ GV TP+ + K+ + P + +E + M+G LMYA+ TRPD+AY V + ++ +P E + CKR+F
Sbjct: 66 LESLRAAIALAAIENLEMIQMDIRGAYLNGELKEEVFMQQPPGFEDGTGR---VWRLKKSLYGLHQSGREWNREFDQKVQTIGLTKTAADNCVYYRERDG--ERVWVTVWVDDLIILATSKDEGERVKKELDTLFEMKDLGEPRKIIGIEVTRDRSAGTVTLSQRHYIESLLDRYGFSDLNGVSTPLVPDANTKMRQLPKDAPPTAPSARAEYQSMIGGLMYAAICTRPDIAYAVGRLSQFAANPGPEHQAACKRVF 317
BLAST of mRNA_H-paniculata_contig46854.11667.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT) HSP 1 Score: 169 bits (429), Expect = 2.470e-45 Identity = 90/251 (35.86%), Postives = 151/251 (60.16%), Query Frame = 1
Query: 1 MSTLRTVFSLVIERDFELEGMDVDAAYLNAPVEEELFVKLPPDFSSLSRD-IPFVRRLRKSLYGLKQSGRNWNNALDDFLVGIGLDRSIANSCLYFSRDDGGETNVPVVVYVDDLFIAGRR-EKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGSYIREVQKIYGFNECRGVPTPVEGKVKISAPESADKPSEQKGMVGSLMYASTGTRPDVAYVVHQTARRMEDPCREEFSKCKRIFR 747
++++R + L + + + MDV A+L+ P++ E+F++ P F LS + + V RL+KSLYGLKQSGRNWN LD++L+ G R+ + C+Y + GE + VV++VDDL IA +K+ +FK N+ +FRMKDLG +S LGI ++ NG I ++ YI+++ +G ++C+ TP E + + + P + +VGSL+Y T TRPD+++VV + ++++ P E+ K + R
Sbjct: 259 ITSIRILMQLAAQYNLTVHQMDVKTAFLHVPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKISQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDCKPRTTPCEQRFEGMSDSEQVDPRRYREIVGSLIYLMTCTRPDISWVVSKLSQKLSCPRLEDLVTAKHVLR 505
BLAST of mRNA_H-paniculata_contig46854.11667.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT) HSP 1 Score: 166 bits (421), Expect = 3.990e-45 Identity = 89/242 (36.78%), Postives = 148/242 (61.16%), Query Frame = 1
Query: 1 MSTLRTVFSLVIERDFELEGMDVDAAYLNAPVEEELFVKLPPDFSSLSRD-IPFVRRLRKSLYGLKQSGRNWNNALDDFLVGIGLDRSIANSCLYFSRDDGGETNVPVVVYVDDLFIAGRR-EKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGSYIREVQKIYGFNECRGVPTPVEGKVKISAPESADKPSEQKGMVGSLMYASTGTRPDVAYVVHQTARRMEDPCREE 720
++++ + L + D + MDV A+L+AP++ E+F++ P F LS + + V RL+KSLYGLKQSGRNWN LD++L+ G R+ + C+Y + GE + VV++VDDL IA +K+ +FK N+ +FRMKDLG +S LGI ++ NG I ++ YI+++ +G ++C+ TP E + + + P + +VGSL+Y T TRPD+++VV + ++++ P E+
Sbjct: 234 ITSITILMQLAAQYDLTVHQMDVKTAFLHAPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKIRQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDCKPRTTPCEQRFEGMSDSEQVDPRRYREIVGSLIYLMTCTRPDISWVVSKLSQKLSCPRLED 471 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46854.11667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig46854.11667.1 >prot_H-paniculata_contig46854.11667.1 ID=prot_H-paniculata_contig46854.11667.1|Name=mRNA_H-paniculata_contig46854.11667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp MSTLRTVFSLVIERDFELEGMDVDAAYLNAPVEEELFVKLPPDFSSLSRDback to top mRNA from alignment at H-paniculata_contig46854:2..835- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig46854.11667.1 ID=mRNA_H-paniculata_contig46854.11667.1|Name=mRNA_H-paniculata_contig46854.11667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=834bp|location=Sequence derived from alignment at H-paniculata_contig46854:2..835- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig46854:2..835- >mRNA_H-paniculata_contig46854.11667.1 ID=mRNA_H-paniculata_contig46854.11667.1|Name=mRNA_H-paniculata_contig46854.11667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at H-paniculata_contig46854:2..835- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |