mRNA_H-paniculata_contig46854.11667.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46854.11667.1
Unique NamemRNA_H-paniculata_contig46854.11667.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig46854.11667.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.460e-49
Identity = 102/251 (40.64%), Postives = 148/251 (58.96%), Query Frame = 1
Query:    1 MSTLRTVFSLVIERDFELEGMDVDAAYLNAPVEEELFVKLPPDFSSLSRDI-PFVRRLRKSLYGLKQSGRNWNNALDDFLVGIGLDRSIANSCLYFSRDDGGETNVPVVVYVDDLFIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGSYIREVQKIYGFNECRGVPTPVEGKVKISAPESADKPSEQKGMVGSLMYASTGTRPDVAYVVHQTARRMEDPCREEFSKCKRIFR 747
            M+T+R V +L    D EL+ MDVD AYL + +EE++++K PP +     +    V RLRKSLYGLKQSGRNW+  +D +  G GL  S A+ CLY      GE  V +V+YVDDL I    R   D+FK +IS+ F MKDL  L  +LG+ ++R+R N T+ IS   YI  +   +G  +C+ V TP+EG +     +     +E   +VGSL+YA+  TRPD+A+ V    + ++   +E +   KR+ R
Sbjct:  284 MTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEILV-IVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNKEHWIAAKRVLR 533          
BLAST of mRNA_H-paniculata_contig46854.11667.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 176 bits (445), Expect = 9.110e-49
Identity = 101/251 (40.24%), Postives = 145/251 (57.77%), Query Frame = 1
Query:    1 MSTLRTVFSLVIERDFELEGMDVDAAYLNAPVEEELFVKLPPDFSSL-SRDIPFVRRLRKSLYGLKQSGRNWNNALDDFLVGIGLDRSIANSCLYFSRDDGGETNVPVVVYVDDLFIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGSYIREVQKIYGFNECRGVPTPVEGKVKISAPESADKPSEQKGMVGSLMYASTGTRPDVAYVVHQTARRMEDPCREEFSKCKRIFR 747
            ++T+R V +L    D EL+ MDV+ AYL + +EE+++VK PP +    S     V RLRKSLYGLKQSGRNW+  +D +  G G   S A+ CLY      GE  V +V+YVDDL I    RE V +FKH IS+ F MKDL  L  +LG+ ++RDR    + IS  +YI  +   +   +C+ V TP+EG +     +     +E   +VGSL+YA+  TRPD+A+ V    + ++    E +   KR+ R
Sbjct:   64 ITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILV-IVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLR 313          
BLAST of mRNA_H-paniculata_contig46854.11667.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU)

HSP 1 Score: 177 bits (449), Expect = 4.350e-47
Identity = 105/261 (40.23%), Postives = 150/261 (57.47%), Query Frame = 1
Query:    1 MSTLRTVFSLVIERDFELEGMDVDAAYLNAPVEEELFVKLPPDFSSLSRDIPFVRRLRKSLYGLKQSGRNWNNALDDFLVGIGLDRSIANSCLYFSRDDGGETNVPVVVYVDDLFIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGSYIREVQKIYGFNECRGVPTPVEGKVKISAPESADKPS-----------EQKGMVGSLMYASTGTRPDVAYVVHQTARRMEDPCREEFSKCKRIFR 747
            + ++R + +L    D EL+ MDV AAYLN  ++EEL++ +PPD   ++ +     RL++SLYGLKQ+GR WN  LD  L G+G +R  + +CLY  RDD G+    +VVYVDDL +A   R  +DE K  ++ +F+M+DLG  S +LGI +RRDRP   I +S   YI  V   YG  +C+   TP+   VK SA +  D  +               ++GS+MYA  GTRPD+AY+V    R   +P R  +   KR  R
Sbjct: 1073 LESVRIILALAARYDLELDQMDVSAAYLNGELDEELYL-MPPD--GVAIEPGHCWRLKRSLYGLKQAGRTWNKTLDRKLTGLGFNRLDSETCLYVFRDDKGQLCF-LVVYVDDLLLAATSRAFMDEVKRKLTAQFKMRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVKPSADDPEDNTTLHSITIEGRSVSYASVIGSMMYAMMGTRPDIAYLVGVLGRYSANPKRCHWEMAKRGLR 1329          
BLAST of mRNA_H-paniculata_contig46854.11667.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 167 bits (422), Expect = 7.840e-47
Identity = 97/229 (42.36%), Postives = 138/229 (60.26%), Query Frame = 1
Query:    1 MSTLRTVFSLVIERDFELEGMDVDAAYLNAPVEEELFVKLPPDFSSLSRD-IPFVRRLRKSLYGLKQSGRNWNNALDDFLVGIGLDRSIANSCLYFSRDDGGETNVPVVVYVDDLFIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGSYIREVQKIYGFNECRGVPTPVEGKVKISAPESADKPS-EQKGMVGSLMYASTGTRPDVAYVV 678
            ++T+R + ++    D EL+ MDVD AYL + +EE+++VK PP +     +    V RLRKSLYGLKQSGRNW+  +D +  G G   S A+ CLY      GE  V +V+YVDDL IAG  R+ VD+FK  IS+   MKDL  L  +LG+ ++R+R    + IS  +YI  +   +   +C+ V TP+EG +        DKP  E   +VGSL+YA+  TRPD+A+ V
Sbjct:   64 ITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEMLV-IVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRNREKRFMEISQTAYIDMMLAKFKMADCKPVLTPMEG-ILTKMNGEGDKPDREYMKLVGSLLYAALVTRPDIAFAV 290          
BLAST of mRNA_H-paniculata_contig46854.11667.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA)

HSP 1 Score: 175 bits (444), Expect = 1.620e-46
Identity = 99/251 (39.44%), Postives = 146/251 (58.17%), Query Frame = 1
Query:    1 MSTLRTVFSLVIERDFELEGMDVDAAYLNAPVEEELFVKLPPDFSSL-SRDIPFVRRLRKSLYGLKQSGRNWNNALDDFLVGIGLDRSIANSCLYFSRDDGGETNVPVVVYVDDLFIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGSYIREVQKIYGFNECRGVPTPVEGKVKISAPESADKPSEQKGMVGSLMYASTGTRPDVAYVVHQTARRMEDPCREEFSKCKRIFR 747
            ++T+R + ++    D EL+ MDV+ AYL + +EE+++VK P  +    S     V RLRKSLYGLKQSGRNW+  +D +  G G   S A+ CLY      GE  V +V+YVDDL I    RE V++FKH IS+ F MKDL  L  +LG+ ++RDR    + IS  +YI  +   +G  +C+ V TP+EG +     +     +E   +VGSL+YA+  TRPD+A+ V    + ++    E +   KR+ R
Sbjct:  504 ITTIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILV-IVLYVDDLIITSNSREMVNKFKHAISREFSMKDLKELDWILGMAIKRDREKRVMEISQTAYIDMMLAKFGMADCKPVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLR 753          
BLAST of mRNA_H-paniculata_contig46854.11667.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA)

HSP 1 Score: 175 bits (443), Expect = 2.390e-46
Identity = 100/251 (39.84%), Postives = 146/251 (58.17%), Query Frame = 1
Query:    1 MSTLRTVFSLVIERDFELEGMDVDAAYLNAPVEEELFVKLPPDFSSLSRD-IPFVRRLRKSLYGLKQSGRNWNNALDDFLVGIGLDRSIANSCLYFSRDDGGETNVPVVVYVDDLFIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGSYIREVQKIYGFNECRGVPTPVEGKVKISAPESADKPSEQKGMVGSLMYASTGTRPDVAYVVHQTARRMEDPCREEFSKCKRIFR 747
            ++T+R + ++    D EL+ MDV+ AYL + +EE+++VK P  +     +    V RLRKSLYGLKQSGRNW+  +D +  G G   S A+ CLY      GE  V +V+YVDDL I    RE VD+FK  IS+ F MKDL  L  +LG+ ++R+R    + IS  +YI  V   +G  +CR V TP+EG +     + A   +E   +VGSL+YA+  TRPD+A+ V    + ++    E +   KR+ R
Sbjct:  293 ITTIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGLNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEMLV-IVLYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGMADCRPVLTPMEGTLTKMDGKDAKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLR 542          
BLAST of mRNA_H-paniculata_contig46854.11667.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 174 bits (441), Expect = 4.560e-46
Identity = 101/251 (40.24%), Postives = 143/251 (56.97%), Query Frame = 1
Query:    1 MSTLRTVFSLVIERDFELEGMDVDAAYLNAPVEEELFVKLPPDFSSLSRDI-PFVRRLRKSLYGLKQSGRNWNNALDDFLVGIGLDRSIANSCLYFSRDDGGETNVPVVVYVDDLFIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGSYIREVQKIYGFNECRGVPTPVEGKVKISAPESADKPSEQKGMVGSLMYASTGTRPDVAYVVHQTARRMEDPCREEFSKCKRIFR 747
            M+T+R V +L    D EL+ MDVD AYL + +EE++++K P  +     +    V RLRKSLYGLKQSGRNW+  +D +  G G   S A+ CLY      GE  V VV+YVDDL IA   R   D+FK  IS+ F MKDL  L  +LG+ ++R+R    + IS   YI  +   +G  +C+ V TP+EG +     +     SE   +VGSL+YA+  TRPD+A+ V    + ++    E +   KR+ R
Sbjct:  582 MTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPHGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEMLV-VVLYVDDLIIASNSRTMADKFKQAISREFSMKDLKELDWILGMAIKRNREKRIMEISQTGYIDMMLNKFGMTDCKPVLTPMEGTLTKMDGKDVKPDSEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLR 831          
BLAST of mRNA_H-paniculata_contig46854.11667.1 vs. uniprot
Match: A0A146H3U8_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H3U8_MYCCL)

HSP 1 Score: 168 bits (425), Expect = 1.600e-45
Identity = 98/257 (38.13%), Postives = 148/257 (57.59%), Query Frame = 1
Query:    1 MSTLRTVFSLVIERDFELEGMDVDAAYLNAPVEEELFVKLPPDFSSLSRDIPFVRRLRKSLYGLKQSGRNWNNALDDFLVGIGLDRSIANSCLYFSRDDGGETNVPVVVYVDDLFI-AGRREKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGSYIREVQKIYGFNECRGVPTPV--EGKVKI------SAPESADKPSEQKGMVGSLMYASTGTRPDVAYVVHQTARRMEDPCREEFSKCKRIF 744
            + +LR   +L    + E+  MD+  AYLN  ++EE+F++ PP F   +     V RL+KSLYGL QSGR WN   D  +  IGL ++ A++C+Y+   DG    V V V+VDDL I A  +++ +  K  +   F MKDLG   +++GIEV RDR  GT+T+S   YI  +   YGF++  GV TP+  +   K+      + P +    +E + M+G LMYA+  TRPD+AY V + ++   +P  E  + CKR+F
Sbjct:   66 LESLRAAIALAAIENLEMIQMDIRGAYLNGELKEEVFMQQPPGFEDGTGR---VWRLKKSLYGLHQSGREWNREFDQKVQTIGLTKTAADNCVYYRERDG--ERVWVTVWVDDLIILATSKDEGERVKKELDTLFEMKDLGEPRKIIGIEVTRDRSAGTVTLSQRHYIESLLDRYGFSDLNGVSTPLVPDANTKMRQLPKDAPPTAPSARAEYQSMIGGLMYAAICTRPDIAYAVGRLSQFAANPGPEHQAACKRVF 317          
BLAST of mRNA_H-paniculata_contig46854.11667.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT)

HSP 1 Score: 169 bits (429), Expect = 2.470e-45
Identity = 90/251 (35.86%), Postives = 151/251 (60.16%), Query Frame = 1
Query:    1 MSTLRTVFSLVIERDFELEGMDVDAAYLNAPVEEELFVKLPPDFSSLSRD-IPFVRRLRKSLYGLKQSGRNWNNALDDFLVGIGLDRSIANSCLYFSRDDGGETNVPVVVYVDDLFIAGRR-EKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGSYIREVQKIYGFNECRGVPTPVEGKVKISAPESADKPSEQKGMVGSLMYASTGTRPDVAYVVHQTARRMEDPCREEFSKCKRIFR 747
            ++++R +  L  + +  +  MDV  A+L+ P++ E+F++ P  F  LS + +  V RL+KSLYGLKQSGRNWN  LD++L+  G  R+  + C+Y  +   GE  + VV++VDDL IA    +K+ +FK N+  +FRMKDLG +S  LGI  ++   NG I ++   YI+++   +G ++C+   TP E + +  +      P   + +VGSL+Y  T TRPD+++VV + ++++  P  E+    K + R
Sbjct:  259 ITSIRILMQLAAQYNLTVHQMDVKTAFLHVPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKISQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDCKPRTTPCEQRFEGMSDSEQVDPRRYREIVGSLIYLMTCTRPDISWVVSKLSQKLSCPRLEDLVTAKHVLR 505          
BLAST of mRNA_H-paniculata_contig46854.11667.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT)

HSP 1 Score: 166 bits (421), Expect = 3.990e-45
Identity = 89/242 (36.78%), Postives = 148/242 (61.16%), Query Frame = 1
Query:    1 MSTLRTVFSLVIERDFELEGMDVDAAYLNAPVEEELFVKLPPDFSSLSRD-IPFVRRLRKSLYGLKQSGRNWNNALDDFLVGIGLDRSIANSCLYFSRDDGGETNVPVVVYVDDLFIAGRR-EKVDEFKHNISQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGSYIREVQKIYGFNECRGVPTPVEGKVKISAPESADKPSEQKGMVGSLMYASTGTRPDVAYVVHQTARRMEDPCREE 720
            ++++  +  L  + D  +  MDV  A+L+AP++ E+F++ P  F  LS + +  V RL+KSLYGLKQSGRNWN  LD++L+  G  R+  + C+Y  +   GE  + VV++VDDL IA    +K+ +FK N+  +FRMKDLG +S  LGI  ++   NG I ++   YI+++   +G ++C+   TP E + +  +      P   + +VGSL+Y  T TRPD+++VV + ++++  P  E+
Sbjct:  234 ITSITILMQLAAQYDLTVHQMDVKTAFLHAPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKIRQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDCKPRTTPCEQRFEGMSDSEQVDPRRYREIVGSLIYLMTCTRPDISWVVSKLSQKLSCPRLED 471          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46854.11667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TJ26_9STRA1.460e-4940.64Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7TCB8_9STRA9.110e-4940.24Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
A0A1M2VT18_TRAPU4.350e-4740.23Retrovirus-related Pol polyprotein from transposon... [more]
W7TII5_9STRA7.840e-4742.36Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7T0T3_9STRA1.620e-4639.44Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7TIM1_9STRA2.390e-4639.84Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7T174_9STRA4.560e-4640.24Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A146H3U8_MYCCL1.600e-4538.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HLY2_PARCT2.470e-4535.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9HG25_PARCT3.990e-4536.78Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46854contigH-paniculata_contig46854:2..835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score162.5
Seed ortholog evalue2.5e-37
Seed eggNOG ortholog4081.Solyc12g009540.1.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Exons2
Model size747
Cds size747
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930395.3539863-CDS-H-paniculata_contig46854:1..1341622930395.3539863-CDS-H-paniculata_contig46854:1..134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46854 2..134 -
1691481272.3130896-CDS-H-paniculata_contig46854:1..1341691481272.3130896-CDS-H-paniculata_contig46854:1..134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46854 2..134 -
1622930395.3717744-CDS-H-paniculata_contig46854:221..8351622930395.3717744-CDS-H-paniculata_contig46854:221..835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46854 222..835 -
1691481272.3247545-CDS-H-paniculata_contig46854:221..8351691481272.3247545-CDS-H-paniculata_contig46854:221..835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46854 222..835 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46854.11667.1prot_H-paniculata_contig46854.11667.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46854 2..835 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46854.11667.1

>prot_H-paniculata_contig46854.11667.1 ID=prot_H-paniculata_contig46854.11667.1|Name=mRNA_H-paniculata_contig46854.11667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp
MSTLRTVFSLVIERDFELEGMDVDAAYLNAPVEEELFVKLPPDFSSLSRD
IPFVRRLRKSLYGLKQSGRNWNNALDDFLVGIGLDRSIANSCLYFSRDDG
GETNVPVVVYVDDLFIAGRREKVDEFKHNISQRFRMKDLGSLSRVLGIEV
RRDRPNGTITISHGSYIREVQKIYGFNECRGVPTPVEGKVKISAPESADK
PSEQKGMVGSLMYASTGTRPDVAYVVHQTARRMEDPCREEFSKCKRIFR
back to top

mRNA from alignment at H-paniculata_contig46854:2..835-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46854.11667.1 ID=mRNA_H-paniculata_contig46854.11667.1|Name=mRNA_H-paniculata_contig46854.11667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=834bp|location=Sequence derived from alignment at H-paniculata_contig46854:2..835- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGACGTTACGTACTGTTTTTAGCCTGGTCATCGAACGTGATTTCGA ATTAGAAGGCATGGACGTAGATGCGGCGTATTTGAACGCCCCGGTAGAAG AAGAGCTGTTTGTTAAGCTACCCCCCGACTTTTCCTCTCTCTCCCGAGAC ATACCGTTTGTGCGCCGCCTGCGTAAAAGCCTGTACGGCCTCAAGCAGAG CGGCCGAAACTGGAATAACGCTCTTGACGATTTTCTTGTTGGGATAGGAC TCGACCGTTCCATTGCCAACTCATGCTTGTACTTTTCCCGCGACGATGGG GGAGAGACAAACGTCCCGGTGGTTGTCTATGTTGACGACCTGTTCATTGC TGGCCGTCGCGAGAAAGTAGACGAGTTCAAGCATAACATAAGTCAGCGTT TTAGGATGAAAGACTTGGGCTCTCTCTCGCGCGTGTTGGGAATAGAAGTA CGACGTGACCGCCCTAATGGTACAATAACCATCTCGCACGGTAGCTACAT CCGCGAGGTACAAAAAATATACGGTTTTAACGAGTGTCGAGGAGTACCCA CCCCTGTAGAGGGAAAAGTGAAGATTTCGGCACCCGAATCGGCCGACAAG CCCTCCGAACAGAAGTCACTTGGAGCTGTACTGTCGGACATAGGCGGCGC AGGAGTACGAGAAAGCAGAAGAGGGAGAAGTGGCAATTCATCTGACTACA GAGGCATGGTAGGATCACTCATGTACGCCTCGACAGGAACTAGACCTGAT GTAGCATACGTGGTACACCAAACAGCACGTCGTATGGAGGACCCATGCCG GGAAGAATTCAGTAAATGCAAGCGCATTTTTCGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig46854:2..835-

>mRNA_H-paniculata_contig46854.11667.1 ID=mRNA_H-paniculata_contig46854.11667.1|Name=mRNA_H-paniculata_contig46854.11667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at H-paniculata_contig46854:2..835- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGACGTTACGTACTGTTTTTAGCCTGGTCATCGAACGTGATTTCGA
ATTAGAAGGCATGGACGTAGATGCGGCGTATTTGAACGCCCCGGTAGAAG
AAGAGCTGTTTGTTAAGCTACCCCCCGACTTTTCCTCTCTCTCCCGAGAC
ATACCGTTTGTGCGCCGCCTGCGTAAAAGCCTGTACGGCCTCAAGCAGAG
CGGCCGAAACTGGAATAACGCTCTTGACGATTTTCTTGTTGGGATAGGAC
TCGACCGTTCCATTGCCAACTCATGCTTGTACTTTTCCCGCGACGATGGG
GGAGAGACAAACGTCCCGGTGGTTGTCTATGTTGACGACCTGTTCATTGC
TGGCCGTCGCGAGAAAGTAGACGAGTTCAAGCATAACATAAGTCAGCGTT
TTAGGATGAAAGACTTGGGCTCTCTCTCGCGCGTGTTGGGAATAGAAGTA
CGACGTGACCGCCCTAATGGTACAATAACCATCTCGCACGGTAGCTACAT
CCGCGAGGTACAAAAAATATACGGTTTTAACGAGTGTCGAGGAGTACCCA
CCCCTGTAGAGGGAAAAGTGAAGATTTCGGCACCCGAATCGGCCGACAAG
CCCTCCGAACAGAAATGTCGACGTTACGTACTGTTTTTAGCCTGGTCATC
GAACGTGATTTCGAATTAGAAGGCATGGACGTAGATGCGGCGTATTTGAA
CGCCCCGGTAGAAGAAGAGCTGTTTGTTAAGCTACCCCCCGACTTTTCCT
CTCTCTCCCGAGACATACCGTTTGTGCGCCGCCTGCGTAAAAGCCTGTAC
GGCCTCAAGCAGAGCGGCCGAAACTGGAATAACGCTCTTGACGATTTTCT
TGTTGGGATAGGACTCGACCGTTCCATTGCCAACTCATGCTTGTACTTTT
CCCGCGACGATGGGGGAGAGACAAACGTCCCGGTGGTTGTCTATGTTGAC
GACCTGTTCATTGCTGGCCGTCGCGAGAAAGTAGACGAGTTCAAGCATAA
CATAAGTCAGCGTTTTAGGATGAAAGACTTGGGCTCTCTCTCGCGCGTGT
TGGGAATAGAAGTACGACGTGACCGCCCTAATGGTACAATAACCATCTCG
CACGGTAGCTACATCCGCGAGGTACAAAAAATATACGGTTTTAACGAGTG
TCGAGGAGTACCCACCCCTGTAGAGGGAAAAGTGAAGATTTCGGCACCCG
AATCGGCCGACAAGCCCTCCGAACAGAAAGGCATGGTAGGATCACTCATG
TACGCCTCGACAGGAACTAGACCTGATGTAGCATACGTGGTACACCAAAC
AGCACGTCGTATGGAGGACCCATGCCGGGAAGAATTCAGTAAATGCAAGC
GCATTTTTCGTAGGCATGGTAGGATCACTCATGTACGCCTCGACAGGAAC
TAGACCTGATGTAGCATACGTGGTACACCAAACAGCACGTCGTATGGAGG
ACCCATGCCGGGAAGAATTCAGTAAATGCAAGCGCATTTTTCGT
back to top