mRNA_H-paniculata_contig4684.11663.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4684.11663.1
Unique NamemRNA_H-paniculata_contig4684.11663.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4684.11663.1 vs. uniprot
Match: A0A6H5L892_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L892_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 9.620e-38
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:    1 GFGNRERAEQSPDAVGRRCRIRSRLTPSLPSKAGAMWYGVPVPVSRGFETLFTFQISDHSRECTEHMDPLFSRQL 225
            GFGNRE  +QSPDA G RCR+RSRLTPSLPSKAGAMWY +PVPV+RGFETLFTFQI+DHSR CTEH DPLFSR+L
Sbjct:   13 GFGNREAVQQSPDARGSRCRVRSRLTPSLPSKAGAMWYSLPVPVTRGFETLFTFQITDHSRMCTEHTDPLFSRRL 87
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BLAST of mRNA_H-paniculata_contig4684.11663.1 vs. uniprot
Match: D8LHX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHX6_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 3.170e-36
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:    1 GFGNRERAEQSPDAVGRRCRIRSRLTPSLPSKAGAMWYGVPVPVSRGFETLFTFQISDHSRECTEHMDPLFSRQL 225
            GFGNRE  +QSPDA G RCR+RSRLTPSLPSKAGAMWY +PVPV+RGFETLFTFQI+DHSR CTEH DPLFSR+L
Sbjct:   21 GFGNREAVQQSPDAGGSRCRVRSRLTPSLPSKAGAMWYSLPVPVTRGFETLFTFQITDHSRMCTEHTDPLFSRRL 95
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BLAST of mRNA_H-paniculata_contig4684.11663.1 vs. uniprot
Match: A0A7S2CPB0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPB0_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 7.950e-20
Identity = 39/74 (52.70%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:    4 FGNRERAEQSPDAVGRRCRIRSRLTPSLPSKAGAMWYGVPVPVSRGFETLFTFQISDHSRECTEHMDPLFSRQL 225
            FG+R+     P     RC +R RL PS PS+AG+MWY  P+P+++GF+TLFTFQ+SDHS+EC++H DP FS  +
Sbjct:   42 FGHRDNFRPHPRG---RCPVRVRLNPSRPSRAGSMWYHTPIPINKGFQTLFTFQVSDHSKECSKHKDPTFSLHM 112
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BLAST of mRNA_H-paniculata_contig4684.11663.1 vs. uniprot
Match: A0A7S1XMZ6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMZ6_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 7.860e-17
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:    4 FGNRERAEQSPDAVGRRCRIRSRLTPSLPSKAGAMWYGVPVPVSRGFETLFTFQISDHSRECTEHMDPLFS 216
            FG+R+    +PD    RC +R R+TPS P + G+ WY  P+PV +GF TLF+FQ+SDHS+ CT+H DP+FS
Sbjct:  109 FGHRDSYVAAPDE---RCGVRVRMTPSQPHQIGSFWYTAPLPVFQGFLTLFSFQVSDHSKVCTQHRDPIFS 176
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BLAST of mRNA_H-paniculata_contig4684.11663.1 vs. uniprot
Match: A0A6S9H5Z4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9H5Z4_HETAK)

HSP 1 Score: 82.0 bits (201), Expect = 1.430e-16
Identity = 41/71 (57.75%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:    4 FGNRERAEQSPDAVGRRCRIRSRLTPSLPSKAGAMWYGVPVPVSRGFETLFTFQISDHSRECTEHMDPLFS 216
            FG+R+    +P   G  C +R RLTPS P++AGA WY  P+PV  GF TLFTFQ+SDHSR CT H DP FS
Sbjct:   98 FGHRDDFVPTP---GGPCPVRLRLTPSRPARAGAAWYRNPLPVHLGFSTLFTFQVSDHSRVCTTHKDPDFS 165
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BLAST of mRNA_H-paniculata_contig4684.11663.1 vs. uniprot
Match: A0A7S2FHR0_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FHR0_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.640e-16
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:   52 RCRIRSRLTPSLPSKAGAMWYGVPVPVSRGFETLFTFQISDHSRECTEHMDPLFSRQL 225
            RC +R RLTPS  ++AG++WY VP+  ++GF+T FTFQISD SREC+ H DPLFS  L
Sbjct:   16 RCPVRVRLTPSKSTRAGSIWYHVPLATNKGFQTTFTFQISDQSRECSLHRDPLFSLNL 73
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BLAST of mRNA_H-paniculata_contig4684.11663.1 vs. uniprot
Match: A0A482SVB0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SVB0_9ARCH)

HSP 1 Score: 78.6 bits (192), Expect = 2.270e-15
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:    1 GFGNRERAEQSPDAVGRRCRIRSRLTPSLPSKAGAMWYGVPVPVSRGFETLFTFQISDHSRECTEHMDPLFS 216
            GF NR+   Q+PD     C +R RLTPS PSK G +W+  P PV+ GF+T FTFQISDHS++CT + D  F+
Sbjct:   71 GFLNRDDTIQAPDF----CNVRLRLTPSGPSKVGTVWFTDPAPVNNGFDTYFTFQISDHSKQCTLNKDQYFT 138
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BLAST of mRNA_H-paniculata_contig4684.11663.1 vs. uniprot
Match: B5YP85_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YP85_THAPS)

HSP 1 Score: 75.5 bits (184), Expect = 2.630e-14
Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:   55 CRIRSRLTPSLPSKAGAMWYGVPVPVSRGFETLFTFQISDHSRECTEHMDPLFSRQ 222
            CR R RLTPS PSKAG++WY   VPV RGFET F++QI+D S ECT+H+D  FS Q
Sbjct:  108 CRNRLRLTPSHPSKAGSVWYESRVPVLRGFETTFSWQITDPSVECTDHVDKTFSTQ 163
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BLAST of mRNA_H-paniculata_contig4684.11663.1 vs. uniprot
Match: A0A812WYL1_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WYL1_SYMMI)

HSP 1 Score: 75.1 bits (183), Expect = 4.020e-14
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:   55 CRIRSRLTPSLPSKAGAMWYGVPVPVSRGFETLFTFQISDHSRECTEHMDPLFSRQ 222
            C+ R RLTPS P+KAG++W+   VPV+ GF+T FTFQISDHS+ECT H D  F+++
Sbjct:   93 CKGRVRLTPSGPAKAGSIWFRDDVPVNNGFDTYFTFQISDHSKECTVHKDQYFTQR 148
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BLAST of mRNA_H-paniculata_contig4684.11663.1 vs. uniprot
Match: A0A7S3GU82_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU82_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.610e-11
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    1 GFGNRERAEQSPDAVGRRCRIRSRLTPSLPSKAGAMWYGVPVPVSRGFETLFTFQISDHSRECTEHMDPLFSR 219
            GF +R   + +P+    RC  R RLTPS PSKAG++++    PV+ GF+T FTFQ++DHS++CT + D  FS+
Sbjct:  102 GFIHRSGTKSAPN----RCAGRIRLTPSGPSKAGSIFFVDQAPVNNGFDTYFTFQVTDHSKQCTVNKDQYFSQ 170
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4684.11663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L892_9PHAE9.620e-3882.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHX6_ECTSI3.170e-3682.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CPB0_9STRA7.950e-2052.70Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1XMZ6_9STRA7.860e-1752.11Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A6S9H5Z4_HETAK1.430e-1657.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2FHR0_9STRA1.640e-1660.34Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A482SVB0_9ARCH2.270e-1552.78Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
B5YP85_THAPS2.630e-1464.29Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A812WYL1_SYMMI4.020e-1458.93Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A7S3GU82_9STRA1.610e-1146.58Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4684contigH-paniculata_contig4684:1218..3600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue5.7e-30
Seed eggNOG ortholog2880.D8LHX6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Legume lectin domain
EggNOG OGs2CMVS@1,2QS8X@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size227
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930394.739712-CDS-H-paniculata_contig4684:1217..13821622930394.739712-CDS-H-paniculata_contig4684:1217..1382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4684 1218..1382 +
1691481272.0281615-CDS-H-paniculata_contig4684:1217..13821691481272.0281615-CDS-H-paniculata_contig4684:1217..1382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4684 1218..1382 +
1622930394.7613916-CDS-H-paniculata_contig4684:3540..36001622930394.7613916-CDS-H-paniculata_contig4684:3540..3600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4684 3541..3600 +
1691481272.0391746-CDS-H-paniculata_contig4684:3540..36001691481272.0391746-CDS-H-paniculata_contig4684:3540..3600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4684 3541..3600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4684.11663.1prot_H-paniculata_contig4684.11663.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4684 1218..3600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4684.11663.1

>prot_H-paniculata_contig4684.11663.1 ID=prot_H-paniculata_contig4684.11663.1|Name=mRNA_H-paniculata_contig4684.11663.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
GFGNRERAEQSPDAVGRRCRIRSRLTPSLPSKAGAMWYGVPVPVSRGFET
LFTFQISDHSRECTEHMDPLFSRQL
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mRNA from alignment at H-paniculata_contig4684:1218..3600+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4684.11663.1 ID=mRNA_H-paniculata_contig4684.11663.1|Name=mRNA_H-paniculata_contig4684.11663.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2383bp|location=Sequence derived from alignment at H-paniculata_contig4684:1218..3600+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATTTGGAAACCGAGAAAGAGCGGAACAGTCTCCCGATGCCGTTGGAAG
GAGATGCCGAATACGATCTCGCCTTACTCCCTCGTTGCCATCCAAAGCAG
GGGCAATGTGGTACGGGGTTCCAGTGCCTGTGTCTCGAGGATTCGAAACC
CTTTTTACTTTTCAGGTAGGCTCTTTGGTGTCAGCCAACAAGTGTTGCGC
GTGTTTGCTGCCAATCCAGTCTACTAGGGATTAAGGGATTAGGGGAAATG
GGTCCGGGGCTTCCGTGGTACTACGAGAATGACTTACTTGTGAAAGGGCA
TGCCTCATTCAGCTGCTACATGAATGACCACGAACCCTTGAGAGATATCC
GGGCGGGGGCGTAGGTGGGGGGCGGAAATAGGGGGGGGAGGGTACTCCTC
CGCACAGTTGAGTAACGAGTTGGATTTGATGTTTCGTGTGCATAAGAGAT
CGAGACTGATACAAAATGTGCACACTACATGATACGTGATAGTATCAACA
TACAGCAATGATAAGATGACTAGTAGTGCTCTTCATGCAGGAGCAAGAAG
CTTATCACCAACTGCAATATAGCGACATCACTACATGCGCAAATTGCGGA
GGACAGCTTGACCAGCCGGGCGGCGTCTACAGTGTGAGAAGATGATCTAG
AAAAGATGCTGTAGCTATGACAGTATAATGGAGTCAACAATGAGTCAAAA
TGTAGAAAATCAAATCAGTTCATGTTTAAGCGCAACAATGATCGTACTAC
ACAAAGGAGGTATGCTTAGCATCTTTAAGTTGATGGATTACTGTTATTAT
ACATAAACTGAACAGAACTAAGGGGGGGGAATTACCAACTTCGTGGCAGA
CTTTGGAAGGCGTCGGATTTTTTGTGCCTCAATTTCTCGGATGTATATGT
CGTTTTTCCCGCCTCTCCCCGTGGTGTCGTGTGCGTCGTGTGCACCAACC
GCTTGATCTTAGGGGGTGGTGTTTCAATATCATAATATAGGCACAGAAAA
AGTATGCCACTGACTTTCACCCCCTGGGCCAGCACGAATATCTGGAGTAT
GACCACTCGCAACGAAAATGAACAAGTAGTCGCCTGAACGTTCAGCATGA
CCGCATTTGTTTTATGTGCTCTGGAAGGACCAACTACGATCGCTCTGAAT
AGTAGTAAAACGAACAAGCAGGGGTCAACAATTTATTCTACCGTACATGC
CCGCATATTCTGAACTTTGACGCGAATAGTTTCCAATTGGCGTCGCGAAT
ACTCCACGTATTCGTGTTCCTCCCGGGTGTGAAAAATTCCAATACCTACT
AGGCTCACACCAGATTCGTGAAGAGATCCATTCTTCTGCAATAGCAAGGT
TCTGACTACAGAGAGTCGTTTTTTTCTTCGCTCCAACACTTGCTACTATT
TTCTATTATGTTTGCCTCCCCACAATGTCCAAACTCGGAGGTAGCTGTTG
GTAAGGAAATGCAATGAGCGCAAACTAGAGGACAATTTTGGTACACCCTG
ATGAAGACTCTTTTGAAAAATTGTTAAACAACCATAATCGTAAGAGCGTA
CGCAAGAACGCACGCATGCACGCACCCACATACACACATACACATATATA
TATATAAATCATGTCGTATTATTCCGTATCCGACATGGTTAAAGTACTAT
AATAGACTGAAAATACCCGGCTCACGGAGTGCCTTTCTCCGTTCGGCGAA
GCCAGGAAGTGCTATTTTTCCACTTTTTTTTTCGTATTTTCAAAATAACA
CGGGCCGCTCCCAGACCCAGCAGTTTCTTAATTTCCTCGAAATTTCAAGG
CGCAGTTTTACAGTCGCGGGTCGGAGAAACTGAACTTATATATGGAGGGA
GAAAGAAAGTGGTGATTCCAAAAATTAGGCCGATACTACGCTAGCACCAT
TTAACAGAGATGTCGACGCGGGCATAGATGGCTTCCTAAAGTTGTAGGGA
CTGCGGACGAAACACATCTAAAACAACGGTGCCCGGACAAGCTCAAACGA
TGCTTTCTGAGCGCGGCGACAAGTGATACATGGCTATCCACCCCGTTGCG
GTGCCTCCTGACCAAATTAGCGCCTACCATAGATGCAGCACTCTAGTAAG
AACCTGTTATTTGGGCCTAGGCTCAACGTCTTTTTGTACATCCTCACCCG
AAATGTGAATATTTTATATCCAGTATATGGGAATGAGTATAACTCCACGA
GTTGAGCCAATTCCTCCGAAGAATTTTATCAAACATTCCAGCTTATTACT
TTGTAATTTGAGCCCGTGTTTCTCGTTGAGCTGTTCTTAATAGCGCACCG
AACGTGCCTACATGCTACCGCAGATAAGCGACCACAGCAGGGAGTGCACG
GAGCACATGGATCCTCTGTTTAGCCGGCAGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4684:1218..3600+

>mRNA_H-paniculata_contig4684.11663.1 ID=mRNA_H-paniculata_contig4684.11663.1|Name=mRNA_H-paniculata_contig4684.11663.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig4684:1218..3600+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATTTGGAAACCGAGAAAGAGCGGAACAGTCTCCCGATGCCGTTGGAAG
GAGATGCCGAATACGATCTCGCCTTACTCCCTCGTTGCCATCCAAAGCAG
GGGCAATGTGGTACGGGGTTCCAGTGCCTGTGTCTCGAGGATTCGAAACC
CTTTTTACTTTTCAGGGATTTGGAAACCGAGAAAGAGCGGAACAGTCTCC
CGATGCCGTTGGAAGGAGATGCCGAATACGATCTCGCCTTACTCCCTCGT
TGCCATCCAAAGCAGGGGCAATGTGGTACGGGGTTCCAGTGCCTGTGTCT
CGAGGATTCGAAACCCTTTTTACTTTTCAGATAAGCGACCACAGCAGGGA
GTGCACGGAGCACATGGATCCTCTGTTTAGCCGGCAGCTGATAAGCGACC
ACAGCAGGGAGTGCACGGAGCACATGGATCCTCTGTTTAGCCGGCAGCTG
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