mRNA_H-paniculata_contig4675.11647.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4675.11647.1
Unique NamemRNA_H-paniculata_contig4675.11647.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4675.11647.1 vs. uniprot
Match: A0A5D6XW10_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW10_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.380e-19
Identity = 46/91 (50.55%), Postives = 62/91 (68.13%), Query Frame = 2
Query:    2 FAATSAVNVTASVAKDAVFTRMFGITKPKPLPISTLMLFAGRDCMTIAASFNFPEPASRCLQDFGGVPAHTADLAAQMACPPLIQLLSTPL 274
            FAAT+AVN++  +AKD  F +MFG+  P   P++ + LFA RD +T+AASFN P+  +R LQD  GV    A  AAQ+ CP L+Q +STPL
Sbjct:  116 FAATTAVNMSLCIAKDRAFAQMFGVVAPSAFPLAAVGLFAVRDSLTVAASFNAPKAVARKLQDDTGVDPARARTAAQLLCPALVQFVSTPL 206          
BLAST of mRNA_H-paniculata_contig4675.11647.1 vs. uniprot
Match: A0A433PI02_9FUNG (Uncharacterized protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PI02_9FUNG)

HSP 1 Score: 88.6 bits (218), Expect = 4.560e-19
Identity = 46/91 (50.55%), Postives = 62/91 (68.13%), Query Frame = 2
Query:    2 FAATSAVNVTASVAKDAVFTRMFGITKPKPLPISTLMLFAGRDCMTIAASFNFPEPASRCLQDFGGV-PAHTADLAAQMACPPLIQLLSTP 271
            F +T+ VN++  + KD  FTRMFG+T  +PLP++T  LFA RD +T+AASFN PE  S  L  +G V    +AD+ AQ+ACP  +Q LSTP
Sbjct:  137 FVSTTLVNMSFCIYKDRAFTRMFGLTAARPLPLATYGLFASRDALTVAASFNAPEVVSATLLRYGAVWDKRSADVVAQLACPAAVQFLSTP 227          
BLAST of mRNA_H-paniculata_contig4675.11647.1 vs. uniprot
Match: A0A8H7PPD2_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PPD2_9FUNG)

HSP 1 Score: 82.4 bits (202), Expect = 5.970e-17
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    2 FAATSAVNVTASVAKDAVFTRMFGITKPKPLPISTLMLFAGRDCMTIAASFNFPEPASRCLQDFGGVPAHTA-DLAAQMACPPLIQLLSTPL 274
            F  T+AVN++A + KD  FTRMFG    KPLP  + +LFA RD +TIAASFN P   S+ +Q  G + +  A D  +Q+ACP L+Q+LSTPL
Sbjct:  125 FVGTTAVNMSACIYKDRAFTRMFGTVATKPLPALSYLLFAARDSLTIAASFNAPPIVSQWIQTEGILNSTKASDTLSQIACPALMQVLSTPL 216          
BLAST of mRNA_H-paniculata_contig4675.11647.1 vs. uniprot
Match: A0A261XX22_9FUNG (Uncharacterized protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XX22_9FUNG)

HSP 1 Score: 81.3 bits (199), Expect = 7.970e-17
Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 2
Query:    2 FAATSAVNVTASVAKDAVFTRMFGITKPKPLPISTLMLFAGRDCMTIAASFNFPEPASRCLQDFGGVPAHTADLAAQMACPPLIQLLSTPL 274
            F  T+A N+   + KD  FTRMFG       P+ +  LFA RD +T+AASFN P+  S  LQ       HTAD+ AQ+ CP L+Q +STPL
Sbjct:   77 FFGTTATNMALCILKDRAFTRMFGTVASHSFPLPSYALFAARDSLTVAASFNAPQLVSHYLQKHNISTKHTADIVAQLGCPALVQFVSTPL 167          
BLAST of mRNA_H-paniculata_contig4675.11647.1 vs. uniprot
Match: A0A8H7U8D9_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7U8D9_MORIS)

HSP 1 Score: 81.6 bits (200), Expect = 1.180e-16
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 2
Query:    2 FAATSAVNVTASVAKDAVFTRMFGITKPKPLPISTLMLFAGRDCMTIAASFNFPEPASRCLQDFGGV-PAHTADLAAQMACPPLIQLLSTPL 274
            F  T+AVN+TA + KD  FTRMFG    KPLP+ + +LFA RD +TI +SFN P   S+ +Q  G +  +  +D  AQ+ACP ++Q +STPL
Sbjct:  126 FVGTTAVNMTACIIKDRAFTRMFGTVASKPLPLFSYLLFASRDSLTILSSFNAPPIVSKYIQTEGILNSSKMSDTIAQLACPAVMQFISTPL 217          
BLAST of mRNA_H-paniculata_contig4675.11647.1 vs. uniprot
Match: A0A163AVY2_PHYB8 (Uncharacterized protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A163AVY2_PHYB8)

HSP 1 Score: 80.5 bits (197), Expect = 3.770e-16
Identity = 46/92 (50.00%), Postives = 57/92 (61.96%), Query Frame = 2
Query:    2 FAATSAVNVTASVAKDAVFTRMFGITKPKPLPISTLMLFAGRDCMTIAASFNFPEPASRCLQDFGGVP-AHTADLAAQMACPPLIQLLSTPL 274
            F  TS VN++  + KD  FTRMFG++  KPLP+ T +LFA RD MTIAASF  P   S  LQ    V  +   + AAQ+ CP  +Q LSTPL
Sbjct:  124 FIGTSIVNMSLCIIKDRAFTRMFGVSAAKPLPLLTYLLFAARDSMTIAASFTAPSYISATLQQHKLVSNSDQGNTAAQLVCPAAVQFLSTPL 215          
BLAST of mRNA_H-paniculata_contig4675.11647.1 vs. uniprot
Match: A0A8H7BJY4_9FUNG (Uncharacterized protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BJY4_9FUNG)

HSP 1 Score: 80.1 bits (196), Expect = 4.210e-16
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 2
Query:    2 FAATSAVNVTASVAKDAVFTRMFGITKPKPLPISTLMLFAGRDCMTIAASFNFPEPASRCLQDFGGVPAHTADLAAQMACPPLIQLLSTPL 274
            F AT+AVN++  + KD  FTRMFG++  KPLP+ + + FA RD MT+AASF  P   S+ LQ+      H A +AAQ++CP  +Q  STPL
Sbjct:  124 FLATTAVNMSVCIYKDRAFTRMFGVSAVKPLPLLSYLFFATRDSMTVAASFIAPPIVSKALQEKEWSEDH-AKVAAQLSCPAAVQFFSTPL 213          
BLAST of mRNA_H-paniculata_contig4675.11647.1 vs. uniprot
Match: A0A8K1CT18_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CT18_PYTOL)

HSP 1 Score: 79.7 bits (195), Expect = 5.070e-16
Identity = 41/91 (45.05%), Postives = 60/91 (65.93%), Query Frame = 2
Query:    2 FAATSAVNVTASVAKDAVFTRMFGITKPKPLPISTLMLFAGRDCMTIAASFNFPEPASRCLQDFGGVPAHTADLAAQMACPPLIQLLSTPL 274
            F  T+AVN+T  +AKD  FT+MFG+  P   P++++ LFA RD MT+AASFN P+  ++ LQ+   V   T+   +Q+ CP  +Q +STPL
Sbjct:  112 FVGTTAVNMTLCIAKDRAFTQMFGVIAPAAFPLASVGLFAIRDSMTVAASFNAPKIMAQQLQEKAHVKPSTSATISQLVCPAAVQFVSTPL 202          
BLAST of mRNA_H-paniculata_contig4675.11647.1 vs. uniprot
Match: A0A507CAX6_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507CAX6_9FUNG)

HSP 1 Score: 79.7 bits (195), Expect = 7.230e-16
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 2
Query:    2 FAATSAVNVTASVAKDAVFTRMFGITKPKPLPISTLMLFAGRDCMTIAASFNFPEPASRCLQ-DFGGVPAHTADLAAQMACPPLIQLLSTP 271
            F  TS  N+T +V KD  FT+ FG   PKPLP+++ +LFA RD +TI +SF  P P SR LQ  F G+ A  AD  +Q+  P  +Q++S+P
Sbjct:  137 FLGTSVSNITLTVMKDQAFTKWFGAVSPKPLPLTSYVLFASRDALTIGSSFTLPGPVSRQLQATFPGLEAAKADFWSQLLLPCAVQMISSP 227          
BLAST of mRNA_H-paniculata_contig4675.11647.1 vs. uniprot
Match: A0A024GPM5_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GPM5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 7.480e-16
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 2
Query:    2 FAATSAVNVTASVAKDAVFTRMFGITKPKPLPISTLMLFAGRDCMTIAASFNFPEPASRCLQDFGGVPAHTADLAAQMACPPLIQLLSTPL 274
            F  T+AVN+T  +AKD  FTRMFG  +P   P+S++ LFA RD +T+AASFN P+  +  ++    +    A + AQ+ CP  IQ +STPL
Sbjct:  116 FLCTTAVNMTLCIAKDRAFTRMFGTIRPTAFPLSSIALFAVRDSLTVAASFNAPKILAEQIRAHSDMEIGKASIIAQLFCPAAIQFISTPL 206          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4675.11647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5D6XW10_9STRA2.380e-1950.55Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A433PI02_9FUNG4.560e-1950.55Uncharacterized protein n=1 Tax=Endogone sp. FLAS-... [more]
A0A8H7PPD2_9FUNG5.970e-1751.09Uncharacterized protein n=1 Tax=Umbelopsis vinacea... [more]
A0A261XX22_9FUNG7.970e-1746.15Uncharacterized protein n=1 Tax=Bifiguratus adelai... [more]
A0A8H7U8D9_MORIS1.180e-1647.83Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
A0A163AVY2_PHYB83.770e-1650.00Uncharacterized protein n=1 Tax=Phycomyces blakesl... [more]
A0A8H7BJY4_9FUNG4.210e-1648.35Uncharacterized protein n=1 Tax=Apophysomyces ossi... [more]
A0A8K1CT18_PYTOL5.070e-1645.05Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A507CAX6_9FUNG7.230e-1646.15Uncharacterized protein n=1 Tax=Synchytrium microb... [more]
A0A024GPM5_9STRA7.480e-1645.05Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4675contigH-paniculata_contig4675:443..1588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930393.0971823-CDS-H-paniculata_contig4675:442..5711622930393.0971823-CDS-H-paniculata_contig4675:442..571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4675 443..571 -
1691481271.237938-CDS-H-paniculata_contig4675:442..5711691481271.237938-CDS-H-paniculata_contig4675:442..571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4675 443..571 -
1622930393.1152294-CDS-H-paniculata_contig4675:1438..15881622930393.1152294-CDS-H-paniculata_contig4675:1438..1588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4675 1439..1588 -
1691481271.25004-CDS-H-paniculata_contig4675:1438..15881691481271.25004-CDS-H-paniculata_contig4675:1438..1588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4675 1439..1588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4675.11647.1prot_H-paniculata_contig4675.11647.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4675 443..1588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4675.11647.1

>prot_H-paniculata_contig4675.11647.1 ID=prot_H-paniculata_contig4675.11647.1|Name=mRNA_H-paniculata_contig4675.11647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
IRGNIRGQRDGFGGERCRLYPHVWHHQAKAFAYLHVDVIRRTRLHDHRCQ
LQLSGTSITVPSGLRRRSCPHGGFSCSDGLPAANTTSLHAAV*
back to top

mRNA from alignment at H-paniculata_contig4675:443..1588-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4675.11647.1 ID=mRNA_H-paniculata_contig4675.11647.1|Name=mRNA_H-paniculata_contig4675.11647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig4675:443..1588- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCGCGGCAACATCCGCGGTCAACGTGACGGCTTCGGTGGCGAAAGATG CCGTCTTTACCCGCATGTTTGGCATCACCAAGCCAAAGCCTTTGCCTATC TCCACGTTGATGTTATTCGCCGGACGAGATTGCATGACCATCGCTGCCAG GTGAGTCCGATTGGGCTTCATAGATATCCTACGAGTATCTGTACAGATTT AGTCTTGTACACGTAACTACTACTACCAGGTCATGGTGGATTAAATGAAA CATTATTTGTGGAAATTCTGAGAGTCACAGCTGAAGTTAAGCTAGCATTC ACTATGTTTTTGTTACATACAACAACGGCTCCTTCTCTCTCTTAACACAG AGACATCGAAAAGTGAGCAATTTGTCTTTGTGTATTCTTCTGATTCTGAT TATCATTATATTATTAGTTATTCTATATTGTTATTAGTCGTTCAATCATG CAGACATAAGTTCAGTACAACGAGTCGAAGCTGACATGACCTTTTCTCGG TCCGTTGACGAGCTGACATACATGAAACTTGACTGCCATGGCCGCACTCC GTGGGATAGATATCTCTCGACTCTTGCAATCCCTGACAACAATATGTGAA AGCTTTCATCGTCCGGCAAAAAGTACATGCCTCATGGACGTCCAAATTTC ACCGGCACAGCCATACCAACGCTCAAATTCGGAAGAACTGAACGGCGCTG TGCTAAATTCACCAACCCCAACACAATAAACATTAGAGCTCGATCCTGGG CGTTTTTGGGGATCTAAGCTTGAGTCGGCCGTTGTCCCGCCCGCAACAAT ACCTACGGAGTTTGACAAGGCTCGATAAATAGGCGTCGTGAGTATTATAC CGGGTTGCATGGTTTTGTAACATCACCGCTGATCTCGTGTTCTTCAGGGG GGGGGGGGTTCTGCAGTATGACCAGTCCAATCGCTTGCAGGTGGTGCAAT AGAACGAAAGTGTGAGCAATGAACGTTCAAGACTTCCATCCATATCTACC CTCTCCTGTTTGAACAGCTTCAACTTTCCGGAACCAGCATCACGGTGCCT TCAGGACTTCGGAGGCGTTCCTGCCCACACGGCGGATTTAGCTGCTCAGA TGGCTTGCCCGCCGCTAATACAACTTCTCTCCACGCCGCTGTGTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4675:443..1588-

>mRNA_H-paniculata_contig4675.11647.1 ID=mRNA_H-paniculata_contig4675.11647.1|Name=mRNA_H-paniculata_contig4675.11647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig4675:443..1588- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCGCGGCAACATCCGCGGTCAACGTGACGGCTTCGGTGGCGAAAGATG
CCGTCTTTACCCGCATGTTTGGCATCACCAAGCCAAAGCCTTTGCCTATC
TCCACGTTGATGTTATTCGCCGGACGAGATTGCATGACCATCGCTGCCAG
ATTCGCGGCAACATCCGCGGTCAACGTGACGGCTTCGGTGGCGAAAGATG
CCGTCTTTACCCGCATGTTTGGCATCACCAAGCCAAAGCCTTTGCCTATC
TCCACGTTGATGTTATTCGCCGGACGAGATTGCATGACCATCGCTGCCAG
CTTCAACTTTCCGGAACCAGCATCACGGTGCCTTCAGGACTTCGGAGGCG
TTCCTGCCCACACGGCGGATTTAGCTGCTCAGATGGCTTGCCCGCCGCTA
ATACAACTTCTCTCCACGCCGCTGTGTAACTTCAACTTTCCGGAACCAGC
ATCACGGTGCCTTCAGGACTTCGGAGGCGTTCCTGCCCACACGGCGGATT
TAGCTGCTCAGATGGCTTGCCCGCCGCTAATACAACTTCTCTCCACGCCG
CTGTGTAA
back to top