mRNA_H-paniculata_contig4669.11632.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4669.11632.1
Unique NamemRNA_H-paniculata_contig4669.11632.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4669.11632.1 vs. uniprot
Match: A0A6H5KM66_9PHAE (RWD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KM66_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.820e-15
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 NHAEEQSMELEALEAIYADAFSMTSEKPLEWRIHLEPTEGG 123
            NH EEQSMELEALEAIYAD FS+ SEKPLEW++HLEPTEGG
Sbjct:    7 NHEEEQSMELEALEAIYADLFSIVSEKPLEWKVHLEPTEGG 47
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BLAST of mRNA_H-paniculata_contig4669.11632.1 vs. uniprot
Match: A0A7S2Y3E8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3E8_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 8.900e-9
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 NHAEEQSMELEALEAIYADAFSMTSEKPLEWRIHLEPTEG 120
            +HAEEQ ME+EALEAIY D FS TSE PLE+++ LEP  G
Sbjct:   25 DHAEEQEMEVEALEAIYVDEFSKTSEDPLEFKLFLEPFPG 64
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BLAST of mRNA_H-paniculata_contig4669.11632.1 vs. uniprot
Match: A0A7S3YJK7_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YJK7_HETAK)

HSP 1 Score: 51.2 bits (121), Expect = 2.550e-6
Identity = 23/41 (56.10%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 NHAEEQSMELEALEAIYADAFSMTSEKPLEWRIHLEPTEGG 123
            ++AEEQSME+EALEAIY + ++  ++ PLE++I LEP +GG
Sbjct:    2 DYAEEQSMEVEALEAIYMEEYTKIADSPLEYKIFLEPIQGG 42
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4669.11632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KM66_9PHAE1.820e-1585.37RWD domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2Y3E8_9STRA8.900e-967.50Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3YJK7_HETAK2.550e-656.10Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4669contigH-paniculata_contig4669:10131..10253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue2.5e-09
Seed eggNOG ortholog2880.D7FTA4
Preferred nameRWDD4
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0002181,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005844,GO:0006355,GO:0006357,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010469,GO:0010556,GO:0010646,GO:0010647,GO:0014070,GO:0019219,GO:0019222,GO:0019538,GO:0023051,GO:0023052,GO:0023056,GO:0030518,GO:0030521,GO:0030522,GO:0031323,GO:0031326,GO:0032101,GO:0032103,GO:0032104,GO:0032106,GO:0032107,GO:0032109,GO:0032502,GO:0032870,GO:0032991,GO:0033143,GO:0033145,GO:0033554,GO:0033574,GO:0033993,GO:0034599,GO:0034641,GO:0034645,GO:0042221,GO:0043043,GO:0043170,GO:0043401,GO:0043603,GO:0043604,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0048518,GO:0048522,GO:0048545,GO:0048583,GO:0048584,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0060765,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071383,GO:0071394,GO:0071396,GO:0071407,GO:0071495,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:1901564,GO:1901566,GO:1901576,GO:1901654,GO:1901655,GO:1901700,GO:1901701,GO:1903506,GO:1903832,GO:1903833,GO:1990904,GO:2000112,GO:2000273,GO:2000823,GO:2000825,GO:2001141
EggNOG free text desc.positive regulation of androgen receptor activity
EggNOG OGsKOG4018@1,KOG4018@2759
EC2.3.1.225
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Exons1
Model size123
Cds size102
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930391.2813766-UTR-H-paniculata_contig4669:10130..101511622930391.2813766-UTR-H-paniculata_contig4669:10130..10151Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4669 10131..10151 +
1691481270.415128-UTR-H-paniculata_contig4669:10130..101511691481270.415128-UTR-H-paniculata_contig4669:10130..10151Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4669 10131..10151 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930391.2958658-CDS-H-paniculata_contig4669:10151..102531622930391.2958658-CDS-H-paniculata_contig4669:10151..10253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4669 10152..10253 +
1691481270.4262514-CDS-H-paniculata_contig4669:10151..102531691481270.4262514-CDS-H-paniculata_contig4669:10151..10253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4669 10152..10253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4669.11632.1prot_H-paniculata_contig4669.11632.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4669 10152..10253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4669.11632.1

>prot_H-paniculata_contig4669.11632.1 ID=prot_H-paniculata_contig4669.11632.1|Name=mRNA_H-paniculata_contig4669.11632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=34bp
MELEALEAIYADAFSMTSEKPLEWRIHLEPTEGG
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mRNA from alignment at H-paniculata_contig4669:10131..10253+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4669.11632.1 ID=mRNA_H-paniculata_contig4669.11632.1|Name=mRNA_H-paniculata_contig4669.11632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=123bp|location=Sequence derived from alignment at H-paniculata_contig4669:10131..10253+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATCATGCGGAAGAACAGAGCATGGAGCTGGAAGCACTGGAAGCAATATA
TGCAGACGCGTTTTCGATGACGAGTGAAAAACCTTTGGAATGGAGGATAC
ACTTGGAGCCAACGGAGGGCGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4669:10131..10253+

>mRNA_H-paniculata_contig4669.11632.1 ID=mRNA_H-paniculata_contig4669.11632.1|Name=mRNA_H-paniculata_contig4669.11632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=204bp|location=Sequence derived from alignment at H-paniculata_contig4669:10131..10253+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCTGGAAGCACTGGAAGCAATATATGCAGACGCGTTTTCGATGAC
GAGTGAAAAACCTTTGGAATGGAGGATACACTTGGAGCCAACGGAGGGCG
GAATGGAGCTGGAAGCACTGGAAGCAATATATGCAGACGCGTTTTCGATG
ACGAGTGAAAAACCTTTGGAATGGAGGATACACTTGGAGCCAACGGAGGG
CGGA
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