mRNA_H-paniculata_contig46617.11619.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46617.11619.1
Unique NamemRNA_H-paniculata_contig46617.11619.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig46617.11619.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.150e-10
Identity = 38/111 (34.23%), Postives = 63/111 (56.76%), Query Frame = 1
Query:    4 WVADSGATAHMTPSNEMMFDY-DTCNNLFVTVANGETLPIEGSGKMLVWMKDRAEIQNFSLSRVAHAPGLDTNLFSLQVVVKQGLTVCLKEESAAIALPNGNDLLCRKIGK 333
            W+ DSGATAHMTP    +F+Y D   N+ VT+A+G+ + + G+G + +   D   I+   +  V H PGLD  L S+  + ++G++V  ++ S  I   +      +K+GK
Sbjct:  263 WLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRIK---MVEVLHIPGLDRRLLSVGKLAERGMSVEFQQNSCVIWYKSTAIASAKKVGK 370          
BLAST of mRNA_H-paniculata_contig46617.11619.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.390e-9
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 1
Query:    4 WVADSGATAHMTPSNEMMFDY-DTCNNLFVTVANGETLPIEGSGKMLVWMKDRAEIQNFSLSRVAHAPGLDTNLFSLQVVVKQGLTVCLKEESAAIALPNGNDLLCRKIGK 333
            W+ DSGATAHMTP  E +FDY +   ++ VT+A+G+ + + G+G + +   D   I+      V H PGLD  L S+  + ++GL V  +  S  I          +K+GK
Sbjct:  160 WLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGKRIRMLD---VLHIPGLDRRLLSVGKLAERGLNVEFERTSCIIWNKKQATASGKKVGK 267          
BLAST of mRNA_H-paniculata_contig46617.11619.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.290e-9
Identity = 36/111 (32.43%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    4 WVADSGATAHMTPSNEMMFDYDTCN-NLFVTVANGETLPIEGSGKMLVWMKDRAEIQNFSLSRVAHAPGLDTNLFSLQVVVKQGLTVCLKEESAAIALPNGNDLLCRKIGK 333
            W+ DSGATAHMTP  + +F+Y   + +++VT+A+G+ + + G+G + +   D   I+   +  V + PGLD  L S+  + ++G++V  +  S  I   +      +KIGK
Sbjct:  245 WLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSIR---MVEVLYIPGLDRRLLSVGKLAERGMSVEFQRNSCVIWDKSKAVASGKKIGK 352          
BLAST of mRNA_H-paniculata_contig46617.11619.1 vs. uniprot
Match: A0A6A3X5U6_9STRA (CCHC-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3X5U6_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.560e-9
Identity = 37/111 (33.33%), Postives = 65/111 (58.56%), Query Frame = 1
Query:    4 WVADSGATAHMTPSNEMMFDY-DTCNNLFVTVANGETLPIEGSGKMLVWMKDRAEIQNFSLSRVAHAPGLDTNLFSLQVVVKQGLTVCLKEESAAIALPNGNDLLCRKIGK 333
            W+ DSGATAHMTP    +F+Y D  +N+ VT+A+G+ + + G+G + +   D   I+      V + PGLD  L S++ + ++G++V  +++S  I   +      +K+GK
Sbjct:  266 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVRRLAERGMSVEFQKKSCTIWNKSKAIASGKKVGK 373          
BLAST of mRNA_H-paniculata_contig46617.11619.1 vs. uniprot
Match: A0A6A4BQ03_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BQ03_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.780e-9
Identity = 38/111 (34.23%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    4 WVADSGATAHMTPSNEMMFDY-DTCNNLFVTVANGETLPIEGSGKMLVWMKDRAEIQNFSLSRVAHAPGLDTNLFSLQVVVKQGLTVCLKEESAAIALPNGNDLLCRKIGK 333
            W+ DSGATAHMTP    +F+Y D  +N+ VT+A+G+ + + G+G + +   D   I+      V + PGLD  L S+  + ++G++V  +++S  I   +      +KIGK
Sbjct:  242 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLAERGMSVEFQKKSCTIWNKSKAIASGKKIGK 349          
BLAST of mRNA_H-paniculata_contig46617.11619.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM)

HSP 1 Score: 62.0 bits (149), Expect = 1.330e-8
Identity = 37/111 (33.33%), Postives = 63/111 (56.76%), Query Frame = 1
Query:    4 WVADSGATAHMTPSNEMMFDY-DTCNNLFVTVANGETLPIEGSGKMLVWMKDRAEIQNFSLSRVAHAPGLDTNLFSLQVVVKQGLTVCLKEESAAIALPNGNDLLCRKIGK 333
            W+ DSGATAHMTP    +F+Y D  +++ VT+A+G+ + + G+G + +   D   I+      V   PGLD  L S+  + ++G+ V  +++S  I   +    L +K+GK
Sbjct:  267 WLIDSGATAHMTPHRNDLFEYKDLDSDVEVTIADGKKIRVVGTGSVRLTGIDGTRIKMID---VLFIPGLDRQLLSVSRLAERGMIVEFQKKSCTIWNKSKAIALGKKVGK 374          
BLAST of mRNA_H-paniculata_contig46617.11619.1 vs. uniprot
Match: A0A6A3IEW9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3IEW9_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.310e-8
Identity = 36/111 (32.43%), Postives = 62/111 (55.86%), Query Frame = 1
Query:    4 WVADSGATAHMTPSNEMMFDY-DTCNNLFVTVANGETLPIEGSGKMLVWMKDRAEIQNFSLSRVAHAPGLDTNLFSLQVVVKQGLTVCLKEESAAIALPNGNDLLCRKIGK 333
            W+ DSGAT HMTP    +F+Y D  +N+ VT+A+G+ + + G+G + +   D   I+      V + PGLD  L S+  +  +G++V  +++S  I   +      +K+GK
Sbjct:  266 WLIDSGATVHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLADRGVSVEFQKKSCTIWNKSKVIASGKKVGK 373          
BLAST of mRNA_H-paniculata_contig46617.11619.1 vs. uniprot
Match: A0A6A3KTF1_9STRA (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KTF1_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.410e-8
Identity = 36/111 (32.43%), Postives = 62/111 (55.86%), Query Frame = 1
Query:    4 WVADSGATAHMTPSNEMMFDY-DTCNNLFVTVANGETLPIEGSGKMLVWMKDRAEIQNFSLSRVAHAPGLDTNLFSLQVVVKQGLTVCLKEESAAIALPNGNDLLCRKIGK 333
            W+ DSGAT HMTP    +F+Y D  +N+ VT+A+G+ + + G+G + +   D   I+      V + PGLD  L S+  +  +G++V  +++S  I   +      +K+GK
Sbjct:  266 WLIDSGATVHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLADRGVSVEFQKKSCTIWNKSKVIASGKKVGK 373          
BLAST of mRNA_H-paniculata_contig46617.11619.1 vs. uniprot
Match: A0A2P4XNP3_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNP3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 8.430e-8
Identity = 32/86 (37.21%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    4 WVADSGATAHMTPSNEMMFDYD-TCNNLFVTVANGETLPIEGSGKMLVWMKDRAEIQNFSLSRVAHAPGLDTNLFSLQVVVKQGLT 258
            W+ DSGAT+HMTP  E +FD + T +++ VT+A+G+ L + G G + +   +   I+   +  V + PGLD  L S+  + ++GLT
Sbjct:  155 WLIDSGATSHMTPFREDLFDLEGTVSSIEVTIADGKKLRVAGQGTVRLTSLNGKHIK---MMEVLYIPGLDRRLLSVGKLAERGLT 237          
BLAST of mRNA_H-paniculata_contig46617.11619.1 vs. uniprot
Match: A0A225V0K2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V0K2_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.070e-7
Identity = 30/97 (30.93%), Postives = 55/97 (56.70%), Query Frame = 1
Query:    4 WVADSGATAHMTPSNEMMFDYDTCN-NLFVTVANGETLPIEGSGKMLVWMKDRAEIQNFSLSRVAHAPGLDTNLFSLQVVVKQGLTVCLKEESAAIA 291
            W+ DSGAT HMTP  + +++Y T   +++V +A+G+ + + G+G + +   D   I+   +  V H PG D  L S+  +  +G++V  +  S  I+
Sbjct:  169 WLIDSGATVHMTPHRDDLYEYSTIPADMYVAIADGKKIRVAGTGSVRLKGIDGKSIR---MVEVLHVPGFDRRLLSVGKLADRGMSVEFQRNSCVIS 262          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46617.11619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A329SN38_9STRA1.150e-1034.23Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A3M6VPY8_9STRA1.390e-935.14CCHC-type domain-containing protein n=1 Tax=Perono... [more]
A0A225UGS0_9STRA2.290e-932.43Integrase, catalytic core protein (Fragment) n=1 T... [more]
A0A6A3X5U6_9STRA2.560e-933.33CCHC-type domain-containing protein n=5 Tax=Phytop... [more]
A0A6A4BQ03_9STRA2.780e-934.23Retrovirus-related Pol polyprotein from transposon... [more]
H3H572_PHYRM1.330e-833.33Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
A0A6A3IEW9_9STRA4.310e-832.43Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
A0A6A3KTF1_9STRA4.410e-832.43Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A2P4XNP3_9STRA8.430e-837.21Integrase catalytic core protein n=1 Tax=Phytophth... [more]
A0A225V0K2_9STRA1.070e-730.93Uncharacterized protein n=1 Tax=Phytophthora megak... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46617contigH-paniculata_contig46617:1080..1466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue1.5e-09
Seed eggNOG ortholog67593.Physo138220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930390.0922809-CDS-H-paniculata_contig46617:1079..14661622930390.0922809-CDS-H-paniculata_contig46617:1079..1466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46617 1080..1466 +
1691481269.9028685-CDS-H-paniculata_contig46617:1079..14661691481269.9028685-CDS-H-paniculata_contig46617:1079..1466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46617 1080..1466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46617.11619.1prot_H-paniculata_contig46617.11619.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46617 1080..1466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46617.11619.1

>prot_H-paniculata_contig46617.11619.1 ID=prot_H-paniculata_contig46617.11619.1|Name=mRNA_H-paniculata_contig46617.11619.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
FWVADSGATAHMTPSNEMMFDYDTCNNLFVTVANGETLPIEGSGKMLVWM
KDRAEIQNFSLSRVAHAPGLDTNLFSLQVVVKQGLTVCLKEESAAIALPN
GNDLLCRKIGKHDFLVATRFPPPPAISYN
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mRNA from alignment at H-paniculata_contig46617:1080..1466+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46617.11619.1 ID=mRNA_H-paniculata_contig46617.11619.1|Name=mRNA_H-paniculata_contig46617.11619.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=387bp|location=Sequence derived from alignment at H-paniculata_contig46617:1080..1466+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTGGGTGGCCGACAGTGGGGCTACGGCCCACATGACTCCGTCTAACGA AATGATGTTCGATTACGATACCTGCAATAATTTGTTTGTGACGGTGGCTA ACGGCGAAACGCTTCCGATTGAGGGATCTGGTAAGATGTTGGTATGGATG AAGGATCGGGCCGAGATACAAAACTTCAGCTTGAGTCGTGTAGCGCATGC TCCGGGCCTGGACACGAATTTGTTTTCCCTACAGGTTGTAGTGAAGCAGG GGCTTACTGTCTGCTTGAAGGAGGAGAGTGCAGCAATTGCACTACCTAAT GGGAATGATCTTTTGTGCAGAAAAATCGGAAAACATGACTTTTTGGTAGC GACTCGATTCCCGCCCCCACCTGCTATATCTTACAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig46617:1080..1466+

>mRNA_H-paniculata_contig46617.11619.1 ID=mRNA_H-paniculata_contig46617.11619.1|Name=mRNA_H-paniculata_contig46617.11619.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig46617:1080..1466+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTGGGTGGCCGACAGTGGGGCTACGGCCCACATGACTCCGTCTAACGA
AATGATGTTCGATTACGATACCTGCAATAATTTGTTTGTGACGGTGGCTA
ACGGCGAAACGCTTCCGATTGAGGGATCTGGTAAGATGTTGGTATGGATG
AAGGATCGGGCCGAGATACAAAACTTCAGCTTGAGTCGTGTAGCGCATGC
TCCGGGCCTGGACACGAATTTGTTTTCCCTACAGGTTGTAGTGAAGCAGG
GGCTTACTGTCTGCTTGAAGGAGGAGAGTGCAGCAATTGCACTACCTAAT
GGGAATGATCTTTTGTGCAGAAAAATCGGAAAACATGACTTTTTGGTAGC
GACTCGATTCCCGCCCCCACCTGCTATATCTTACAATTTTTGGGTGGCCG
ACAGTGGGGCTACGGCCCACATGACTCCGTCTAACGAAATGATGTTCGAT
TACGATACCTGCAATAATTTGTTTGTGACGGTGGCTAACGGCGAAACGCT
TCCGATTGAGGGATCTGGTAAGATGTTGGTATGGATGAAGGATCGGGCCG
AGATACAAAACTTCAGCTTGAGTCGTGTAGCGCATGCTCCGGGCCTGGAC
ACGAATTTGTTTTCCCTACAGGTTGTAGTGAAGCAGGGGCTTACTGTCTG
CTTGAAGGAGGAGAGTGCAGCAATTGCACTACCTAATGGGAATGATCTTT
TGTGCAGAAAAATCGGAAAACATGACTTTTTGGTAGCGACTCGATTCCCG
CCCCCACCTGCTATATCTTACAAT
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