mRNA_H-paniculata_contig4623.11552.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4623.11552.1
Unique NamemRNA_H-paniculata_contig4623.11552.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4623.11552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4623contigH-paniculata_contig4623:46..366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size321
Cds size306
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930381.589461-UTR-H-paniculata_contig4623:45..601622930381.589461-UTR-H-paniculata_contig4623:45..60Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4623 46..60 +
1691481266.1768072-UTR-H-paniculata_contig4623:45..601691481266.1768072-UTR-H-paniculata_contig4623:45..60Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4623 46..60 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930381.6148834-CDS-H-paniculata_contig4623:60..3661622930381.6148834-CDS-H-paniculata_contig4623:60..366Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4623 61..366 +
1691481266.1867368-CDS-H-paniculata_contig4623:60..3661691481266.1867368-CDS-H-paniculata_contig4623:60..366Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4623 61..366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4623.11552.1prot_H-paniculata_contig4623.11552.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4623 61..366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4623.11552.1

>prot_H-paniculata_contig4623.11552.1 ID=prot_H-paniculata_contig4623.11552.1|Name=mRNA_H-paniculata_contig4623.11552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MEASVKVFASAFRGLKKPPTNRFLFSIVMRCPVELGVVLCMLFLLLLPRR
GSTMFLIICDFGGNFDTASQNCFVSPWQKLVVDFLIPNAVKFPNIWAFMF
Y*
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mRNA from alignment at H-paniculata_contig4623:46..366+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4623.11552.1 ID=mRNA_H-paniculata_contig4623.11552.1|Name=mRNA_H-paniculata_contig4623.11552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=321bp|location=Sequence derived from alignment at H-paniculata_contig4623:46..366+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAAAATACTCAAGTATGGAAGCATCGGTAAAGGTTTTTGCCTCAGCCTT
CCGGGGGTTAAAAAAACCCCCTACAAACAGGTTCCTATTTAGTATCGTGA
TGAGGTGTCCGGTGGAGTTGGGTGTCGTATTGTGCATGTTGTTTCTTTTA
CTGTTGCCGAGGAGAGGAAGCACCATGTTCCTTATAATATGTGACTTTGG
CGGGAATTTTGACACTGCCTCACAGAACTGTTTCGTATCCCCATGGCAGA
AACTTGTGGTCGATTTTCTCATTCCAAATGCCGTAAAATTTCCAAATATT
TGGGCATTCATGTTCTATTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4623:46..366+

>mRNA_H-paniculata_contig4623.11552.1 ID=mRNA_H-paniculata_contig4623.11552.1|Name=mRNA_H-paniculata_contig4623.11552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig4623:46..366+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGCATCGGTAAAGGTTTTTGCCTCAGCCTTCCGGGGGTTAAAAAA
ACCCCCTACAAACAGGTTCCTATTTAGTATCGTGATGAGGTGTCCGGTGG
AGTTGGGTGTCGTATTGTGCATGTTGTTTCTTTTACTGTTGCCGAGGAGA
GGAAGCACCATGTTCCTTATAATATGTGACTTTGGCGGGAATTTTGACAC
TGCCTCACAGAACTGTTTCGTATCCCCATGGCAGAAACTTGTGGTCGATT
TTCTCATTCCAAATGCCGTAAAATTTCCAAATATTTGGGCATTCATGTTC
TATTAGATGGAAGCATCGGTAAAGGTTTTTGCCTCAGCCTTCCGGGGGTT
AAAAAAACCCCCTACAAACAGGTTCCTATTTAGTATCGTGATGAGGTGTC
CGGTGGAGTTGGGTGTCGTATTGTGCATGTTGTTTCTTTTACTGTTGCCG
AGGAGAGGAAGCACCATGTTCCTTATAATATGTGACTTTGGCGGGAATTT
TGACACTGCCTCACAGAACTGTTTCGTATCCCCATGGCAGAAACTTGTGG
TCGATTTTCTCATTCCAAATGCCGTAAAATTTCCAAATATTTGGGCATTC
ATGTTCTATTAG
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