mRNA_H-paniculata_contig46197.11538.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46197.11538.1
Unique NamemRNA_H-paniculata_contig46197.11538.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46197.11538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46197contigH-paniculata_contig46197:448..904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size457
Cds size330
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930379.910058-UTR-H-paniculata_contig46197:447..5741622930379.910058-UTR-H-paniculata_contig46197:447..574Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46197 448..574 +
1691481265.5374005-UTR-H-paniculata_contig46197:447..5741691481265.5374005-UTR-H-paniculata_contig46197:447..574Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46197 448..574 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930379.9251707-CDS-H-paniculata_contig46197:574..9041622930379.9251707-CDS-H-paniculata_contig46197:574..904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46197 575..904 +
1691481265.5477095-CDS-H-paniculata_contig46197:574..9041691481265.5477095-CDS-H-paniculata_contig46197:574..904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46197 575..904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46197.11538.1prot_H-paniculata_contig46197.11538.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46197 575..904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46197.11538.1

>prot_H-paniculata_contig46197.11538.1 ID=prot_H-paniculata_contig46197.11538.1|Name=mRNA_H-paniculata_contig46197.11538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MPSVINPAAFSAFPLDRHYYCPSLPLLSAITIIIIVRKIRNSFHILVIAV
VIIIIMVKIWICEVTIAVIIVITTNVVIFYIHRKFRFVSLGSIPPMISPP
VHIARGACST
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mRNA from alignment at H-paniculata_contig46197:448..904+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46197.11538.1 ID=mRNA_H-paniculata_contig46197.11538.1|Name=mRNA_H-paniculata_contig46197.11538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=457bp|location=Sequence derived from alignment at H-paniculata_contig46197:448..904+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCTGAAATTCGCTTCTTTTTCATCCTCTGCTGCTCGACCCCTGAACCA
CTTCTTCTATTCCCACCTCCTGTCCCTCCATGCGCAGCAACAGTAGCCCT
TCCGCCAAAACCTGATTCGACGGTTACATGCCGAGCGTCATCAATCCCGC
CGCCTTTTCCGCGTTCCCCCTCGATCGACATTATTACTGTCCGTCGCTCC
CGCTGCTGTCGGCCATCACCATTATCATCATCGTCCGAAAAATCCGAAAC
AGCTTCCATATTCTGGTCATCGCCGTCGTCATCATCATCATCATGGTCAA
AATTTGGATCTGTGAGGTCACCATCGCCGTCATCATCGTCATCACCACCA
ATGTTGTAATTTTCTACATCCATCGCAAGTTCCGTTTCGTTTCCCTCGGC
AGTATTCCCCCGATGATATCCCCCCCCGTCCACATAGCTCGTGGTGCCTG
CTCCACC
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Coding sequence (CDS) from alignment at H-paniculata_contig46197:448..904+

>mRNA_H-paniculata_contig46197.11538.1 ID=mRNA_H-paniculata_contig46197.11538.1|Name=mRNA_H-paniculata_contig46197.11538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig46197:448..904+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGAGCGTCATCAATCCCGCCGCCTTTTCCGCGTTCCCCCTCGATCG
ACATTATTACTGTCCGTCGCTCCCGCTGCTGTCGGCCATCACCATTATCA
TCATCGTCCGAAAAATCCGAAACAGCTTCCATATTCTGGTCATCGCCGTC
GTCATCATCATCATCATGGTCAAAATTTGGATCTGTGAGGTCACCATCGC
CGTCATCATCGTCATCACCACCAATGTTGTAATTTTCTACATCCATCGCA
AGTTCCGTTTCGTTTCCCTCGGCAGTATTCCCCCGATGATATCCCCCCCC
GTCCACATAGCTCGTGGTGCCTGCTCCACCATGCCGAGCGTCATCAATCC
CGCCGCCTTTTCCGCGTTCCCCCTCGATCGACATTATTACTGTCCGTCGC
TCCCGCTGCTGTCGGCCATCACCATTATCATCATCGTCCGAAAAATCCGA
AACAGCTTCCATATTCTGGTCATCGCCGTCGTCATCATCATCATCATGGT
CAAAATTTGGATCTGTGAGGTCACCATCGCCGTCATCATCGTCATCACCA
CCAATGTTGTAATTTTCTACATCCATCGCAAGTTCCGTTTCGTTTCCCTC
GGCAGTATTCCCCCGATGATATCCCCCCCCGTCCACATAGCTCGTGGTGC
CTGCTCCACC
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