mRNA_H-paniculata_contig46.11505.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig46.11505.1 vs. uniprot
Match: D7FUD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD9_ECTSI) HSP 1 Score: 303 bits (775), Expect = 2.280e-78 Identity = 185/385 (48.05%), Postives = 237/385 (61.56%), Query Frame = 1
Query: 5842 ARPSKPWAALVALASQS--PADGGGDADSSSDHPGGAGEGEVSLGVRTGGTVVVGTVGDNTAPSVEV--------GSDSSLGAEKALALALTP--IPEEATDSGD-------ELLQEKSDGEMYVEL----GQEDGRSFMADLTANYPYYPWYGVLTATIETALRSMTLEELNERMSMYALPEEPYVEELGREDMLEYPPPDEIPLEDEAVIPSRVIDKMFGETDQEAMIGMQEAMERHHNLPMPARDAIDSARWVAFDAANEYLAEKRRERAPRRSCDGPNPDGKLLQRLPEFRHFRTMDMAVIAVTEAVLGEDGTCLPNPSDESDYVEMLPLDNKPQAWVYHEDDLYFVKCQVAEEILEDLVDDTVQACKRVFALRDEARQKW 6927
ARP KPW AL ALA + GG D + +P A VS GVRTGG G GD G+D L + A+ A + E G E G + V G+ +G FM + +P YPW+ VL IETALRSMTLEELN RMSM+ LP+EP++EEL +D +E+PPP E PLEDEAVIP+RVID++ +D+ + + E ME +P P RDA+DSARW+A+DAANEYLAE+R +RAPRR D P P GKLL F+HFR+MD AV+ VT AVLG+DG CLP D +E LPLD++P+ W++HEDDLY+VKC+VAE ILE+LV+DTVQ CKRV++LR+ AR++W
Sbjct: 3897 ARPKKPWMALAALADNDNGSSSGGQHHDPQTPYPDNASAEGVSFGVRTGG----GGGGDVXXXXXXXXXXDVRFEGADMGLASPGAMTAASGQGDLGEARAGGGGWEGGAAAGATHEDEGGGIRVGDREGGGEVEGDPFMMEQELGWPEYPWWPVLADAIETALRSMTLEELNSRMSMHYLPDEPFIEELEGKDGMEFPPPAEPPLEDEAVIPARVIDELIDASDEAVLASLNE-ME---GIPKPDRDALDSARWMAYDAANEYLAERRSKRAPRRPQDPPAPSGKLLHLFEGFQHFRSMDDAVLEVTSAVLGQDGACLPGREPNPDLIETLPLDSRPEDWLFHEDDLYYVKCRVAEGILEELVEDTVQECKRVYSLREGARERW 4273
BLAST of mRNA_H-paniculata_contig46.11505.1 vs. uniprot
Match: A0A6H5KKL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL5_9PHAE) HSP 1 Score: 294 bits (753), Expect = 4.790e-76 Identity = 146/247 (59.11%), Postives = 188/247 (76.11%), Query Frame = 1
Query: 6187 FMADLTANYPYYPWYGVLTATIETALRSMTLEELNERMSMYALPEEPYVEELGREDMLEYPPPDEIPLEDEAVIPSRVIDKMFGETDQEAMIGMQEAMERHHNLPMPARDAIDSARWVAFDAANEYLAEKRRERAPRRSCDGPNPDGKLLQRLPEFRHFRTMDMAVIAVTEAVLGEDGTCLPNPSDESDYVEMLPLDNKPQAWVYHEDDLYFVKCQVAEEILEDLVDDTVQACKRVFALRDEARQKW 6927
FM + +P YPW+ VL IETALRSMTLEELN RMSM+ LP+EP++EEL +D +E+PPP E PLEDEAVIP+RVID++ +D+ + + E ME +P P RDA+DSARW+A+DAANEYLAE+R +RAPRR D P P GKLL F+HFR+MD AV+ VT AVLG+DG CLP D +E LPLD++P+ W++HEDDLY+VKC+VAE ILE+LV+DTVQ CKRV++LR+ AR++W
Sbjct: 1981 FMMEHELGWPEYPWWPVLADAIETALRSMTLEELNSRMSMHYLPDEPFIEELEGKDGMEFPPPAEPPLEDEAVIPARVIDELIDASDEAVLASLNE-ME---GIPKPDRDALDSARWMAYDAANEYLAERRSKRAPRRPQDPPAPSGKLLHLFEGFQHFRSMDDAVLEVTSAVLGQDGACLPGREPNPDLIETLPLDSRPEDWLFHEDDLYYVKCRVAEGILEELVEDTVQECKRVYSLREGARERW 2223 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46.11505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig46.11505.1 >prot_H-paniculata_contig46.11505.1 ID=prot_H-paniculata_contig46.11505.1|Name=mRNA_H-paniculata_contig46.11505.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=2210bp MEDDIDERHDDGHEDSQQYHHGGRGKGEEALRLAESPAQELRESFALLTVback to top mRNA from alignment at H-paniculata_contig46:40449..55586+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig46.11505.1 ID=mRNA_H-paniculata_contig46.11505.1|Name=mRNA_H-paniculata_contig46.11505.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=15138bp|location=Sequence derived from alignment at H-paniculata_contig46:40449..55586+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig46:40449..55586+ >mRNA_H-paniculata_contig46.11505.1 ID=mRNA_H-paniculata_contig46.11505.1|Name=mRNA_H-paniculata_contig46.11505.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=13260bp|location=Sequence derived from alignment at H-paniculata_contig46:40449..55586+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |