mRNA_H-paniculata_contig46.11504.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig46.11504.1 vs. uniprot
Match: A0A6H5KVQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVQ6_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 4.030e-13 Identity = 60/98 (61.22%), Postives = 70/98 (71.43%), Query Frame = 2
Query: 4610 RLAPAELQVQLMNELELQEDLQDAEMKADGLVAAAAVEEARQGARAATRLLEFERAQAESSALQQQKIYEDALARNDAVHEARLRHERALAEEQACRQ 4903
RLAPAELQ QL+NEL L +DLQDAE++AD L+AA VEEAR+ AR A LL ERA + LQQQ +E ALARNDA HEARLR + A E+A Q
Sbjct: 1320 RLAPAELQAQLLNELRLHDDLQDAELQADALLAAQRVEEARREARVAGLLLRRERA---DTLLQQQDAFEAALARNDATHEARLRRLKQEAGERAAHQ 1414
BLAST of mRNA_H-paniculata_contig46.11504.1 vs. uniprot
Match: D7FUD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD9_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 1.690e-12 Identity = 57/89 (64.04%), Postives = 68/89 (76.40%), Query Frame = 2
Query: 4610 RLAPAELQVQLMNELELQEDLQDAEMKADGLVAAAAVEEARQGARAATRLLEFER---AQAESSAL-QQQKIYEDALARNDAVHEARLR 4864
RLAPAELQ QL+NEL L +DLQDAE++AD L+AA VEEAR+ AR A LL ER AQA++ L QQQ ++E ALA+NDA HEARLR
Sbjct: 1162 RLAPAELQAQLLNELRLHDDLQDAELQADALLAAQRVEEARREARVAGLLLRRERNSKAQAQADTLLQQQDVFEAALAQNDATHEARLR 1250 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46.11504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig46.11504.1 >prot_H-paniculata_contig46.11504.1 ID=prot_H-paniculata_contig46.11504.1|Name=mRNA_H-paniculata_contig46.11504.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1373bp MRRASGATSADMRPSRDPSAGRRTSRKKRKSDGPQQPLEQDKATAHVVPIback to top mRNA from alignment at H-paniculata_contig46:22442..40427+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig46.11504.1 ID=mRNA_H-paniculata_contig46.11504.1|Name=mRNA_H-paniculata_contig46.11504.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=17986bp|location=Sequence derived from alignment at H-paniculata_contig46:22442..40427+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig46:22442..40427+ >mRNA_H-paniculata_contig46.11504.1 ID=mRNA_H-paniculata_contig46.11504.1|Name=mRNA_H-paniculata_contig46.11504.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=8238bp|location=Sequence derived from alignment at H-paniculata_contig46:22442..40427+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |