mRNA_H-paniculata_contig46.11502.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46.11502.1
Unique NamemRNA_H-paniculata_contig46.11502.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig46.11502.1 vs. uniprot
Match: A0A835YX65_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX65_9STRA)

HSP 1 Score: 674 bits (1738), Expect = 6.240e-225
Identity = 352/583 (60.38%), Postives = 418/583 (71.70%), Query Frame = 2
Query:  539 KEEPRPRWEVLRMLNYLVIALFVCSITYVVFNYRTMS---HADSGN--AGLFPILVIWSGCMAYFFGFFGISFLDTNAMARSPSSFGLSHLDHQLYTSRDGPGTNGGFIGAAPGGDGVSQSTMCAKETPSLGLGKSSSSNVSVSAGGRVEGAIQDLPALGPIPEGDEFSSMTDDEVVMCVMSGKLKDHQLEMKLGDHARAVTVRRSLFERRIGR--SMANLPKEGMNYERIFGANCEIVCGYVPIPVGVVGPLLLNGDQVFVPMATTEGCLVASTNXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAAAIKEWCEAPENFDMIRDAFQSTTNFGKLKGLKVSVAGRNVYLRFVCFAGDAMGMNMISKGVLAVIDRLQEMFPEMELVAISGNMCTDKKSAAINWIEGRGKSIVCEARIPGKYVESTLKTTVXXXXXXXXXXXLVGSAMAGALGGFNAHASNVVTAVFLATGQDPAQNVESSTCLTLMEQMENGDLLVSVNMPSIEVGTIGGGTSLPGQAACLDIIGCRGATRAPGCPGDNAQQMAKVVAAATLAGELSLVAALASNQLVRAHMQHNRKKQ 2266
            K EP PRWEVL +LNY V+ +F  S+ YV FNYR +S    A SG+   GL+PIL++W GC+AYFFGFFG+SFLD  AM RSPS+FGL HLD                                       GL  SS                             + ++++D+EV   V+SG +KDHQLE +LGDH RAV VRR +F  R+GR  ++  LP  G +Y R+FGANCEIVCGYVP+PVG+VGPLLL+G +V+VPMATTEGCLVASTN             + +LKDGITRAPCLRMPD + AA +K+W EAP NF  ++ AF+STT+FG+L  +  +VAGRNVYLRFVC AGDAMGMNM+SKG LA +D L E FPE+EL+AISGNMCTDKK AAINWIEGRGKS+VCEARIPG+YVESTLKTTV           L+GSA+AGALGGFNAHASNVVTAVFLATGQDPAQNVE+S C+TLME+ ++GDLLVSVNMP IEVGT+GGGTSLP QAACLD+IGCRGA++AP  PG NA+Q+A+V+AAA LAGELSL+AALASNQLVRAHMQHNRKKQ
Sbjct:   20 KPEPLPRWEVLSVLNYFVVGVFAASLAYVAFNYRAVSSDMQAGSGSKGGGLYPILLVWCGCLAYFFGFFGVSFLDKEAMQRSPSTFGLGHLD--------------------------------------AGLAPSSPRARXXXXXXXXXXXXXXXXXXXXXXXXTDLAALSDEEVAEAVLSGAVKDHQLEPRLGDHTRAVAVRRRVFAARLGRDDALRALPHAGYDYARVFGANCEIVCGYVPLPVGIVGPLLLDGREVYVPMATTEGCLVASTNRGCKAISQGGGARSVVLKDGITRAPCLRMPDTIGAARVKQWVEAPANFARVKAAFESTTSFGRLNAVTGAVAGRNVYLRFVCAAGDAMGMNMVSKGCLAAVDLLTEAFPELELIAISGNMCTDKKPAAINWIEGRGKSVVCEARIPGRYVESTLKTTVRAIVETNVQKNLIGSALAGALGGFNAHASNVVTAVFLATGQDPAQNVEASMCMTLMEETDDGDLLVSVNMPCIEVGTVGGGTSLPAQAACLDVIGCRGASQAPDAPGANARQLAQVIAAAVLAGELSLMAALASNQLVRAHMQHNRKKQ 564          
BLAST of mRNA_H-paniculata_contig46.11502.1 vs. uniprot
Match: D7FUE1_ECTSI (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE1_ECTSI)

HSP 1 Score: 647 bits (1668), Expect = 1.340e-211
Identity = 346/496 (69.76%), Postives = 391/496 (78.83%), Query Frame = 2
Query:  356 MSTFQMPAEQFLEQAFREGARFLISNASVLSGSVLAFVVFAAMTRMFSDSEEDRPTNAKRVKEEPRPRWEVLRMLNYLVIALFVCSITYVVFNYRTMSHADSGNAGLFPILVIWSGCMAYFFGFFGISFLDTNAMARSPSSFGLSHLDHQLYTSRDGPGTNGGFIGAAPGGDGVSQSTMCAKETPSLGLGKSSSSNVSVSAGGRVEGAIQDL--------PALGPIPEGDEFSSMTDDEVVMCVMSGKLKDHQLEMKLGDHARAVTVRRSLFERRIGRSMANLPKEGMNYERIFGANCEIVCGYVPIPVGVVGPLLLNGDQVFVPMATTEGCLVASTNXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAAAIKEWCEAPENFDMIRDAFQSTTNFGKLKGLKVSVAGRNVYLRFVCFAGDAMGMNMISKGVLAVIDRLQEMFPEMELVAISGNMCTDKKSAAINWIEGRGKSIVCEARIPGKYVESTLKTTV 1819
            MST     +  + +A REG  FL++NASVLS + +AFV F+AMTR+FSDS ++RP   K+   EPRPRWEVLR+LNYLVI LFVCSITYVVFNYRTMSHA++GN GLFPILVIWS CMAYFFGFFGISFLDT+AM RSPSSFGLSHLD  LY S              P     S  TMC KETP L                                 PALGP+P+G+++S+MTD+EV  CV++GKLKDHQLE KLGDHARAV VRRSLFERRIGRSM +LP EG +YERIFGANCEIVCGY+PIPVG+VGPL LNG +V+VPMATTEGCLVAST XXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAA +K+W E P+NF+ I+ AFQ+TT FGKL+GL  +VAGRNVYLRF CFAGDAMGMNM+SKGVLAV+D LQ+ FPEMELVAISGNMCTDKKSAAINW+EGRGKSIVCEARIPGK+VE+TLKTTV
Sbjct:    1 MSTVSQDLQALVVKASREGGLFLMANASVLSAAAIAFVFFSAMTRLFSDSSDERPV--KQRPAEPRPRWEVLRVLNYLVIGLFVCSITYVVFNYRTMSHAENGNGGLFPILVIWSVCMAYFFGFFGISFLDTSAMERSPSSFGLSHLDTHLYASERKRAVQ---FAEPPAKGSASNGTMCGKETPQLASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPALGPVPDGEDYSTMTDEEVAACVVTGKLKDHQLEKKLGDHARAVVVRRSLFERRIGRSMESLPVEGYDYERIFGANCEIVCGYIPIPVGIVGPLTLNGQEVYVPMATTEGCLVASTXXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAADLKKWSEMPDNFEAIKAAFQTTTRFGKLQGLMSTVAGRNVYLRFNCFAGDAMGMNMVSKGVLAVVDLLQKEFPEMELVAISGNMCTDKKSAAINWVEGRGKSIVCEARIPGKHVEATLKTTV 491          
BLAST of mRNA_H-paniculata_contig46.11502.1 vs. uniprot
Match: A0A7S3GVF0_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVF0_9STRA)

HSP 1 Score: 577 bits (1487), Expect = 8.130e-187
Identity = 324/601 (53.91%), Postives = 424/601 (70.55%), Query Frame = 2
Query:  524 NAKRVKEEPRPRWEVLRMLNYLVIALFVCSITYVVFNYR-TMSHADSGNAGL----FPILVIWSGCMAYFFGFFGISFLDTNAMARSPSSFGLSHLDH--QLYTSRDGPG-------TNGGF--IGAAPGGDGVSQSTMCAKETPSLGLGKSSSSNVSVSAGGRVEGAI--QDLPALGPIPEGDE--FSSMTDDEVVMCVMSGKLKDHQLEMKLGDHARAVTVRRSLFERRIGRSMANLPKEGMNYERIFGANCEIVCGYVPIPVGVVGPLLLNGDQVFVPMATTEGCLVASTNXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAAAIKEWCEAPENFDMIRDAFQSTTNFGKLKGLKVSVAGRNVYLRFVCFAGDAMGMNMISKGVLAVIDRLQEMFPEMELVAISGNMCTDKKSAAINWIEGRGKSIVCEARIPGKYVESTLKTTVXXXXXXXXXXXLVGSAMAGALGGFNAHASNVVTAVFLATGQDPAQNVESSTCLTLMEQMENGDLL-VSVNMPSIEVGTIGGGTSLPGQAACLDIIGCRGATRAPGC-PGDNAQQMAKVVAAATLAGELSLVAALASNQLVRAHMQHNRK 2260
            ++K +K    P+W VL+ +N +V+A+FV SI Y+V NYR ++S      + +    FP++V+WS C+AYFFGFFGISF+DT  ++ SPS++GL H     +  +  + P        TN  F  +  AP     + +T+    TP  G    ++S+ +     R +G I     PA  P    D+  F+ + D+EV+  +++G LKD+QLE KLGD+ RAV VRRSL+E  + + ++ +P  G +Y ++FGANCEIV GYVP+P+G+ GPL++NG+ V++PMATTEGCLVASTNXXXXXXXXXXXX + ++KD ITRAPCLRMP AM AAA+K W   PEN+ ++  AF STTN+GKL G++ +VAGRNVYLRF C +GDAMGMNM+SKG L  ID LQ  FP++ L+AISGNMCTDKK AAINWI GRGKS+V EA IP   V S LK+ V            +GSAMAGA+GGFNA A+N+VTA++LATGQDPAQNVESS CLT+ME  E+G  + VSV MPSIEVGT+GGGT LP QA CL+I G RGA + PG  PGDNA+++A++V AA LA ELSL+AALA+N LV +HMQHNRK
Sbjct:    7 SSKPLKPASEPKWAVLQAMNVIVLAVFVGSIAYMVVNYRNSLSQPTESPSPITNMFFPMMVLWSCCLAYFFGFFGISFVDTKVLSESPSTYGLQHFPQPGESESEEEEPANQETKAKTNAPFGSLYVAP-----THNTLSQNFTPGAGFNAPATSHTA-----RSDGPICSDKRPATTPAVSADDIDFTVLADEEVLGHLITGTLKDYQLEKKLGDYERAVAVRRSLYEHVLEKDLSLIPHTGYDYNKVFGANCEIVIGYVPLPLGLAGPLIINGEPVYIPMATTEGCLVASTNXXXXXXXXXXXXYSVVMKDAITRAPCLRMPSAMRAAAVKRWVGVPENYALLEQAFNSTTNYGKLAGVEATVAGRNVYLRFNCMSGDAMGMNMVSKGCLKAIDVLQAQFPDLVLIAISGNMCTDKKPAAINWILGRGKSVVVEAIIPESVVTSVLKSNVAAMIEANTQKNHIGSAMAGAIGGFNAQAANIVTAIYLATGQDPAQNVESSNCLTIMEYAEDGKSMHVSVTMPSIEVGTVGGGTHLPAQAGCLEICGVRGAAKGPGAQPGDNARKLAQIVGAAVLAAELSLMAALAANHLVNSHMQHNRK 597          
BLAST of mRNA_H-paniculata_contig46.11502.1 vs. uniprot
Match: A0A6H5KHX7_9PHAE (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHX7_9PHAE)

HSP 1 Score: 513 bits (1322), Expect = 1.100e-166
Identity = 276/348 (79.31%), Postives = 303/348 (87.07%), Query Frame = 2
Query: 1166 SMANLPKEGMNYERIFGANCEIVCGYVPIPVGVVGPLLLNGDQVFVPMATTEGCLVASTNXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAAAIKEWCEAPENFDMIRDAFQSTTNFGKLKGLKVSVAGRNVYLRFVCFAGDAMGMNMISKGVLAVIDRLQEMFPEMELVAISGNMCTDKKSAAINWIEGRGKSIVCEARIPGKYVESTLKTTVXXXXXXXXXXX---------------LVGSAMAGALGGFNAHASNVVTAVFLATGQDPAQNVESSTCLTLMEQMENGDLLVSVNMPSIEVGTIGGGTSLPGQAACLDIIGCRGATRAPGCPGDNAQQMAK 2164
            S+A LP +G +YERIFGANCEIVCGY+PIPVG+VGPL LNG +V+VPMATTEGCLVAST XXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAA +K+W E PENF+ I+ AFQ+TT FGKL+GL  +VAGRNVYLRF CFAGDAMGMNM+SKGVLAV+D LQE FPEMELVAISGNMCTDKKSAAINW+EGRGKSIVCEARIPGK+VE+TLKTTV                          LVGSAMAGALGGFNAHASN+VTAVFLATGQDPAQNVESSTC+TLME+M+NGDLLVSVNMPSIEVGT+GGGTSLP QAACLDI+GCRGAT+APG PG+NAQQMAK
Sbjct:   10 SLAILP-QGYDYERIFGANCEIVCGYIPIPVGIVGPLTLNGQEVYVPMATTEGCLVASTXXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAADLKKWSETPENFEAIKAAFQTTTRFGKLQGLMSTVAGRNVYLRFNCFAGDAMGMNMVSKGVLAVVDLLQEEFPEMELVAISGNMCTDKKSAAINWVEGRGKSIVCEARIPGKHVEATLKTTVKARAKGTTNSIELLFSAMVETNIQKNLVGSAMAGALGGFNAHASNIVTAVFLATGQDPAQNVESSTCITLMEEMDNGDLLVSVNMPSIEVGTVGGGTSLPAQAACLDIVGCRGATQAPGRPGENAQQMAK 356          
BLAST of mRNA_H-paniculata_contig46.11502.1 vs. uniprot
Match: A0A7S4ALR6_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ALR6_9STRA)

HSP 1 Score: 522 bits (1344), Expect = 9.480e-166
Identity = 295/584 (50.51%), Postives = 370/584 (63.36%), Query Frame = 2
Query:  551 RPRWEVLRMLNYLVIALFVCSITYVVFNYRTMSHADSGNAGLFPILVIWSGCMAYFFGFFGISFLDTNAMARSPSSFGLSHLDHQLYTSRDGPGTNGGFIGAAPGGDGVSQSTMCAKETPSLGLGKSSSSNVSVSAGGRVEGAIQDLPALGPIPEGDEFSSMTDDEVVMCVMSGKLKDHQLEMKLGDHARAVTVRRSLFERRI----GRSMAN------LPKE-GMNYERIFGANCEIVCGYVPIPVGVVGPLLLNGDQVFVPMATTEGCLVASTNXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAAAIKEWCEAPENFDMIRDAFQSTTNFGKLKGLKVSVAGRNVYLRFVCFAGDAMGMNMISKGVLAVIDRLQEMFPEMELVAISGNMCTDKKSAAINWIEGRGKSIVCEARIPGKYVESTLKTTVXXXXXXXXXXXLVGSAMAGALGGFNAHASNVVTAVFLATGQDPAQNVESSTCLTLMEQMENGDLLVSVNMPSIEVGTIGGGTSLPGQAACLDIIGCRGATRAPGCPGDNAQQMAKVVAAATLAGELSLVAALASNQLVRAHMQHNRKKQP 2269
            +P+W + + +N++ +A F+CS+     N     H D     L   LV WS  + YFFGFFG+SF+  +              +  L T+      N     +      V     CA         +SS               +  LP        D+   + D+E+   V+S K+KDH LE KL D  RAVTVRR    +++    GR   N      LP E  ++Y R+ GANCEIV GY+P+PVG+VGPL +NG+ V+VPMATTEGCLVAS+N             A +++DGITRAPCLRM  AM AA +K WCE P NF +++ AF+STT+FGKLK    +VAG+NVYLR VCF+GDAMGMNMISKG LAVI+ LQ+ FP  +LVA+SGNMCTDKK+AA NW+ GRGKS+V E  IP + V +TLKTTV           L+GSAMAGA+GGFNAHASN+VTAVFLATGQDPAQNVESS C+TLME+ +NGDL +   MPSIEVGT+GGGTSLP QAACL+ IGC+G    PG    NAQ++A VVAAAT+AGELSL+AALA+N LV+AHM HNRK  P
Sbjct:   78 QPKWHIFKWINFVAVAAFLCSVFTFCSNASQYLH-DESQGVLVQFLVGWSVFLMYFFGFFGVSFIHEDIPREEVDVIPSKPQNKSLSTNNISHNKNKN--NSISNKKSVHPPAACAPVCSDPSSFRSSK--------------VASLP--------DDLKELGDEEIANLVLSNKIKDHMLE-KLLDPFRAVTVRRIACNQKLASVHGRDQQNGNVLDKLPSEPSLDYSRVHGANCEIVVGYIPLPVGLVGPLTINGESVYVPMATTEGCLVASSNRGAKAITQGGGAKARIVRDGITRAPCLRMDSAMEAADLKIWCEQPSNFAVLKKAFESTTSFGKLKECNPTVAGKNVYLRLVCFSGDAMGMNMISKGSLAVIETLQDKFPSCKLVALSGNMCTDKKAAATNWLLGRGKSVVVECVIPKEVVRTTLKTTVAALVHTNINKNLIGSAMAGAIGGFNAHASNIVTAVFLATGQDPAQNVESSNCITLMEEQDNGDLWICCTMPSIEVGTVGGGTSLPAQAACLEAIGCKGGGSTPGA---NAQKLATVVAAATMAGELSLLAALAANTLVQAHMVHNRKPAP 632          
BLAST of mRNA_H-paniculata_contig46.11502.1 vs. uniprot
Match: A0A7S1Y0Q7_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0Q7_9STRA)

HSP 1 Score: 512 bits (1318), Expect = 1.110e-164
Identity = 267/424 (62.97%), Postives = 319/424 (75.24%), Query Frame = 2
Query: 1022 EFSSMTDDEVVMCVMSGKLKDHQLEMKLGDHARAVTVRRSLFERRIGRS--MANLPKEGMNYERIFGANCEIVCGYVPIPVGVVGPLLLNGDQVFVPMATTEGCLVASTNXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAAAIKEWCEAPENFDMIRDAFQSTTNFGKLKGLKVSVAGRNVYLRFVCFAGDAMGMNMISKGVLAVIDRLQEMFPEMELVAISGNMCTDKKSAAINWIEGRGKSIVCEARIPGKYVESTLKTTVXXXXXXXXXXXLVGSAMAGALGGFNAHASNVVTAVFLATGQDPAQNVESSTCLTLMEQME-----NGDLLVSVNMPSIEVGTIGGGTSLPGQAACLDIIGCRGATRAPGCPGDNAQQMAKVVAAATLAGELSLVAALASNQLVRAHMQHNRKKQPT 2272
            E + + D+E+V  V +G +KDH LE KLGD  RAV VRR+L+ERR+G +     LP +  +YERIFGANCEIV GYVP+P GVVGPLLL+G+ V+VPMATTEGCLVASTN             A +LKDGITRAPC+ MP AMAAA +K W E PENF  I++AF STT+FG+LK    ++AGRNVYLR VCFAGDAMGMNM+SKG L VI+ L+E FPEMELVAISGN+C DKK AAINWIEGRGKS+V EA I    V  TLKTTV           L+GSAMAG++GGFNAHA+N+V A FLATGQDPAQ VES+ C+TLME+++        LL+S  MPS+EVGT+GGGTSLP Q ACL+++   GA+RAP  PG NAQ ++K +A A LAGE+SL+AALASNQLVRAHM HNRKK PT
Sbjct:   24 ELAVLPDEELVRMVEAGAIKDHALEKKLGDFNRAVKVRRTLYERRMGNAGVFEKLPVDHFDYERIFGANCEIVVGYVPLPCGVVGPLLLDGEPVYVPMATTEGCLVASTNRGCKAITACGGARARVLKDGITRAPCILMPSAMAAADLKAWVEEPENFQAIQNAFNSTTSFGRLKSCTPTIAGRNVYLRCVCFAGDAMGMNMVSKGCLKVIELLEEHFPEMELVAISGNVCCDKKPAAINWIEGRGKSVVVEATITADVVRKTLKTTVEAMVEANRQKCLIGSAMAGSVGGFNAHAANIVAAAFLATGQDPAQVVESANCITLMEKIDIPGEAEPGLLMSCTMPSLEVGTVGGGTSLPAQRACLEVMNVAGASRAPKAPGTNAQALSKAIAGAVLAGEMSLMAALASNQLVRAHMIHNRKKAPT 447          
BLAST of mRNA_H-paniculata_contig46.11502.1 vs. uniprot
Match: A0A7S2I1A6_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I1A6_9STRA)

HSP 1 Score: 506 bits (1304), Expect = 1.690e-161
Identity = 291/558 (52.15%), Postives = 363/558 (65.05%), Query Frame = 2
Query:  647 SHADSGNAGLFPILVIWSGCMAYFFGFFGISFLDTNAMARS---------PSSFGLSHLDHQLYTSRDGPGTNGGFIGAAPGGDGVSQSTMCAKETPSLGLGKSSSSNVSVSAGGRVEGAIQDLPALGPIPEGDEFSSMTDDEVVMCVMSGKLKDHQLEMKLGDHARAVTVRRSLFERRI-----GRSMANLPK-EGMNYERIFGANCEIVCGYVPIPVGVVGPLLLNGDQVFVPMATTEGCLVASTNXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAAAIKEWCEAPENFDMIRDAFQSTTNFGKLKGLKVSVAGRNVYLRFVCFAGDAMGMNMISKGVLAVIDRLQEMFPEMELVAISGNMCTDKKSAAINWIEGRGKSIVCEARIPGKYVESTLKTTVXXXXXXXXXXXLVGSAMAGALGGFNAHASNVVTAVFLATGQDPAQNVESSTCLTLMEQMENGDLLVSVNMPSIEVGTIGGGTSLPGQAACLDIIGCRGATRAPGCPGDNAQQMAKVVAAATLAGELSLVAALASNQLVRAHMQHNRKKQPTA 2275
            S   + ++ LF  L  WS  + YFFGFFGISF+D + +  +         P S   S    Q++ +           G+AP         +C+          SS    SV+                      E     D+E+   V++G++KDHQLE KL D  RAV VRR+ F+ ++     G ++ +LP    ++Y R+FGANCEIV GYVPIPVG+VGPL LNG  V++PMATTEGCLVASTN             + +L+DGITRAPC+RM  A  AA +K WCE P NF  ++ AF+STT+FGKL  ++ +VAG+NVYLR  CFAGDAMGMNM+SKG LAVID L+++FP+++LVA+SGNMCTDKK+AA NWI GRGKS+V EA IP   V STLKTTV           LVGSAMAGA+GGFNAHA+N VTAVFLATGQDPAQNVESS C+TL+E+ E GDL +   MPSIEVGT+GGGT LP QAACL  IGC+G   +PG   DNA+Q+A VVAAAT+AGELSL+AALA+N LV+AHM HNRK  PTA
Sbjct:   15 SRHMNDSSSLFKFLFAWSVFLCYFFGFFGISFVDADDILATEEPIFSQVQPESASRSKKLKQVHPA----------AGSAP---------VCSVP--------SSFEKASVNKA--------------------ELKEKADEELARMVLAGQIKDHQLE-KLLDPRRAVDVRRAAFDSKLSTVGCGGALKDLPSGPSLDYSRVFGANCEIVVGYVPIPVGMVGPLTLNGQTVYIPMATTEGCLVASTNRGCKAITQGSGATSVILRDGITRAPCVRMSSAKQAADLKLWCEQPNNFATLKQAFESTTSFGKLLTVEPTVAGKNVYLRLQCFAGDAMGMNMVSKGSLAVIDHLKQVFPDLDLVALSGNMCTDKKAAATNWIHGRGKSVVIEATIPNHIVRSTLKTTVQAIVQTNINKNLVGSAMAGAIGGFNAHAANNVTAVFLATGQDPAQNVESSNCITLLEETEQGDLWICCTMPSIEVGTVGGGTGLPAQAACLKAIGCKGGGASPG---DNAKQLAHVVAAATMAGELSLLAALAANTLVQAHMTHNRK--PTA 519          
BLAST of mRNA_H-paniculata_contig46.11502.1 vs. uniprot
Match: A0A1Z5KS57_FISSO (3-hydroxy-3-methylglutaryl coenzyme A reductase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KS57_FISSO)

HSP 1 Score: 509 bits (1311), Expect = 2.820e-161
Identity = 303/650 (46.62%), Postives = 390/650 (60.00%), Query Frame = 2
Query:  419 FLISNASVLSGSVLAFVVFAAMTRMFSDSEEDRP----TNAKRV---KEEPRPRWEVLRMLNYLVIALFVCSITYVVFNYRTMSHADSGNAGLFPILVIWSGCMAYFFGFFGISFLDTNAMARSPSSFGLSHLDHQLYTSRDGPGTNGGFIGAAPGGDGVSQSTMCAKETPSLGLGKSSSSNVSVSAGGRVEGAIQDLPALGPIPEGDEFSSMTDDEVVMCVMSGKLKDHQLEMKLGDHARAVTVRRSLFERRIGR-----SMANLPKE-GMNYERIFGANCEIVCGYVPIPVGVVGPLLLNGDQVFVPMATTEGCLVASTNXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAAAIKEWCEAPENFDMIRDAFQSTTNFGKLKGLKVSVAGRNVYLRFVCFAGDAMGMNMISKGVLAVIDRLQEMFPEMELVAISGNMCTDKKSAAINWIEGRGKSIVCEARIPGKYVESTLKTTVXXXXXXXXXXXLVGSAMAGALGGFNAHASNVVTAVFLATGQDPAQNVESSTCLTLMEQMENGDLLVSVNMPSIEVGTIGGGTSLPGQAACLDIIGCRGATRAPGCPGDNAQQMAKVVAAATLAGELSLVAALASN-----------------------QLVRAHMQHNRK 2260
            F+  +++ L G ++   VF     +    + + P    T  +RV   KE P P+W + R +N LV+  F CS+     N    + A   N  L   L+ WS  + YFFGFFG+ F+                  H L  S                            ET S  + KSS  +   S+      AIQ       I E  +     D E+   V + ++KDH+LE +L  H RAVTVRR + E+++       ++  LP E  ++Y R+ GANCEIV GYVP+PVG++GPL +NG+  ++PMATTEGCLVASTN             A +++DGITRAPC+RMP AMAAA +K WCE PENF  ++ AF+STT+FGKL   K ++AG+NVYLR VCF+GDAMGMNM+SKG LAVI+ L++ FPE+ LVA+SGNMCTDKK+AA NW+EGRGKS+V EA IP   V  TLKTTV           LVGSAMAG +GGFNAHASN+V+A+FLATGQDPAQNVESS C+TLME+ E+GDL +S  MPSIEVGT+GGGTSL  QAACL  +GC+G    PG   DNAQ++AKV+A+AT+AGELSL+AALA+N                        +V AHMQHNRK
Sbjct:   15 FVSVSSNQLYGVIVGVTVFGCWGILSLAEQPELPEWQKTAVQRVPRQKEGPEPQWHLFRWINMLVVVAFACSVAEFSLN----ATAYDSNV-LCQFLMAWSLLLCYFFGFFGVMFV------------------HDLEDS----------------------------ETVSTPVTKSSKIHPPASSTPICSDAIQSKQNKLLIIE--DIKDKKDAEIAQLVFTNQIKDHELEKQLDCH-RAVTVRRLVVEQKLASLGHSGALEGLPYETDLDYSRVHGANCEIVVGYVPLPVGIIGPLTINGESFYIPMATTEGCLVASTNRGAKAITEGGGALAQIVRDGITRAPCIRMPTAMAAAQLKLWCETPENFVQMKAAFESTTSFGKLHECKATIAGKNVYLRLVCFSGDAMGMNMVSKGTLAVIECLRKEFPELSLVALSGNMCTDKKAAATNWLEGRGKSVVVEATIPKDVVRKTLKTTVPAIVETNLNKNLVGSAMAGVIGGFNAHASNIVSAIFLATGQDPAQNVESSNCITLMEETESGDLWISCTMPSIEVGTVGGGTSLAAQAACLKALGCQGGGANPG---DNAQRLAKVIASATMAGELSLLAALAANTCTYLLTDGFWRTNINSPIPSFFSVVAAHMQHNRK 607          
BLAST of mRNA_H-paniculata_contig46.11502.1 vs. uniprot
Match: A0A7S4W3S1_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W3S1_9STRA)

HSP 1 Score: 508 bits (1307), Expect = 1.110e-160
Identity = 300/583 (51.46%), Postives = 386/583 (66.21%), Query Frame = 2
Query:  530 KRVKEEPRPRWEVLRMLNYLVIALFVCSITYVVFNYRTMSHADSGNAGLFPILVIWSGCMAYFFGFFGISFLDTNAMARSPSSFGLSHLDHQLYTSRDGPGTNGGFIGAAPGGDGVSQSTMCAKETPSLGLGKSSSSNVSVSAGGRVEGAIQDLPALGPIPEGDEFSSMTDDEVVMCVMSGKLKDHQLEMKLGDHARAVTVRRSLFERRI-----GRSMANLPK-EGMNYERIFGANCEIVCGYVPIPVGVVGPLLLNGDQVFVPMATTEGCLVASTNXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAAAIKEWCEAPENFDMIRDAFQSTTNFGKLKGLKVSVAGRNVYLRFVCFAGDAMGMNMISKGVLAVIDRLQEMFPEMELVAISGNMCTDKKSAAINWIEGRGKSIVCEARIPGKYVESTLKTTVXXXXXXXXXXXLVGSAMAGALGGFNAHASNVVTAVFLATGQDPAQNVESSTCLTLMEQMENGDLLVSVNMPSIEVGTIGGGTSLPGQAACLDIIGCRGATRAPGCPGDNAQQMAKVVAAATLAGELSLVAALASNQLVRAHMQHNRK 2260
            K  ++ P P+W +L++LNY  ++ F+ S+          S   + ++ LF  L  WS  + YFFGFFGISF+D + +           ++ Q + S +   ++       P           A+ TP   +  S                  + P+L       +  S +++E+   V++G++KDHQLE KL DH RAV VRR  F+ ++     G ++ +LP    ++Y R+FGANCEIV GYVP+PVG+VGPL LNG  V++PMATTEGCLVASTN             + +L+DGITRAPC+RM  A  AA +K WCE P NF  ++ AF+STT FGKL  ++ +VAG+NVYLR  CFAGDAMGMNM+SKG LAVID L+ +FP + LVA+SGNMCTDKK+AA NWI GRGKS+V EA IP   V +TLK   XXXXXXXXXXXL+GSAMAGA+GGFNAHA+N VTAVFLATGQDPAQNVESS C+TL+E+ E+GDL +   MPSIEVGT+GGGTSLP Q+ACL  IGC+G    PG   DNA+Q+A VVAAAT+AGELSL+AALA+N LV+AHM HNRK
Sbjct:   72 KITRQGPEPKWHILKILNYAAVSSFLVSVGCFA---SDASRHMNDSSSLFKFLFGWSFFLCYFFGFFGISFVDADEI-----------MEGQNFESSERSTSSKSKAVHPP-----------AESTPVCTVPSSF-----------------EKPSLSKT----DLQSKSNEELSNMVLTGQIKDHQLE-KLLDHHRAVDVRRLAFDSKLSSVGCGGALTDLPSGPSLDYSRVFGANCEIVVGYVPLPVGMVGPLTLNGRSVYIPMATTEGCLVASTNRGCKAITQGSGATSVILRDGITRAPCVRMNSAKEAAELKLWCEMPANFATLKHAFESTTGFGKLLSVEPTVAGKNVYLRLQCFAGDAMGMNMVSKGSLAVIDFLKSVFPTLVLVALSGNMCTDKKAAATNWIHGRGKSVVVEAIIPQHVVRTTLKXXXXXXXXXXXXXXLIGSAMAGAIGGFNAHAANNVTAVFLATGQDPAQNVESSNCITLLEETEDGDLWICCTMPSIEVGTVGGGTSLPAQSACLKAIGCKGGGVNPG---DNAKQLAHVVAAATMAGELSLLAALAANTLVQAHMTHNRK 604          
BLAST of mRNA_H-paniculata_contig46.11502.1 vs. uniprot
Match: A0A7S2EB74_TRICV (3-hydroxy-3-methylglutaryl coenzyme A reductase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EB74_TRICV)

HSP 1 Score: 506 bits (1304), Expect = 1.260e-159
Identity = 297/588 (50.51%), Postives = 372/588 (63.27%), Query Frame = 2
Query:  554 PRWEVLRMLNYLVIALFVCSITYVVFNYRTMSHAD---SGNAGLFPILVIWSGCMAYFFGFFGISFLDTNAMARSPSSFGLSHLDHQLYTSRD-------GPGTNGGFIGAAPGGD-GVSQSTMCAK---ETPSLGLGKSSSSNVSVSAGGRVEGAIQDLPALGPIPEGDEFSSMTDDEVVMCVMSGKLKDHQLEMKLGDHARAVTVRRSLFERRI-----GRSMANLPKE-GMNYERIFGANCEIVCGYVPIPVGVVGPLLLNGDQVFVPMATTEGCLVASTNXXXXXXXXXXXXXAALLKDGITRAPCLRMPDAMAAAAIKEWCEAPENFDMIRDAFQSTTNFGKLKGLKVSVAGRNVYLRFVCFAGDAMGMNMISKGVLAVIDRLQEMFPEMELVAISGNMCTDKKSAAINWIEGRGKSIVCEARIPGKYVESTLKTTVXXXXXXXXXXXLVGSAMAGALGGFNAHASNVVTAVFLATGQDPAQNVESSTCLTLMEQMENGDLLVSVNMPSIEVGTIGGGTSLPGQAACLDIIGCRGATRAPGCPGDNAQQMAKVVAAATLAGELSLVAALASNQLVRAHMQHNR 2257
            P+W VL+ LN +    F+ S+       R  S A    S +  L   + IWS  + YFFGFFGISF+D    + +      +                  GPG        AP G   + +    A      PS  +    +S   ++             AL P  +G     M D+E+   V+SG +KDHQLE KL   ARAV VRR +FER++     G ++  LP E  ++Y R+ GANCEIV GYVP+P GV+GPL L+G+ V+VPMATTEGCLVAS N             +A+++DGITRAPC+RM  AM AA +K WCE P NF  ++ AF+STT+FGKL G   +VAGRNVYLR  CF+GDAMGMNM+SKG LAVI+ L+  FP +ELVA+SGNMCTDKK+AA NWIEGRGKS+V EA IP   V +TLKTTV           LVGSAMAGALGGFNAHA+N+VTA+FLATGQDPAQNVESS C+TL+E+   GDL +S  MPS+EVGT+GGGT LP QA+CL  IGC+G    PG   DNA+++A+VVAA+ LAGELSL+AALA+N LV+AHM HNR
Sbjct:   99 PKWGVLKALNVVAALAFLFSVI------RFASDASRHMSDSTSLLKFMSIWSALLCYFFGFFGISFVDAEGFSVAGEETKTTEXXXXXXXXXXXXXXXXXGPGKK-----TAPAGSRSIPEKPQHANLHPPAPSAPVCSDPTSRAPITK-----------KALPPNLQG-----MPDNEIAALVLSGVVKDHQLE-KLLSPARAVPVRRIVFERKLSSLNRGGALDELPHEPSLDYGRVHGANCEIVVGYVPLPCGVIGPLTLDGETVYVPMATTEGCLVASANRGCKAISQGGGARSAVIRDGITRAPCVRMRSAMEAAELKLWCEDPANFARLKSAFESTTSFGKLLGAHPTVAGRNVYLRLRCFSGDAMGMNMVSKGSLAVIELLRSTFPSLELVALSGNMCTDKKAAATNWIEGRGKSVVVEATIPKDVVRATLKTTVPAMVNTNLQKNLVGSAMAGALGGFNAHAANIVTAIFLATGQDPAQNVESSNCITLLEETPTGDLWISCTMPSVEVGTVGGGTGLPAQASCLRAIGCKGGGANPG---DNARKLARVVAASVLAGELSLLAALAANTLVQAHMIHNR 655          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46.11502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YX65_9STRA6.240e-22560.383-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
D7FUE1_ECTSI1.340e-21169.76Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Ta... [more]
A0A7S3GVF0_9STRA8.130e-18753.913-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A6H5KHX7_9PHAE1.100e-16679.31Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Ta... [more]
A0A7S4ALR6_9STRA9.480e-16650.513-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A7S1Y0Q7_9STRA1.110e-16462.973-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A7S2I1A6_9STRA1.690e-16152.153-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A1Z5KS57_FISSO2.820e-16146.623-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A7S4W3S1_9STRA1.110e-16051.463-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A7S2EB74_TRICV1.260e-15950.513-hydroxy-3-methylglutaryl coenzyme A reductase (F... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46contigH-paniculata_contig46:4780..17013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score646.4
Seed ortholog evalue1.4e-182
Seed eggNOG ortholog2880.D7FUE1
Preferred nameHMGR
KEGG rclassRC00004,RC00644
KEGG koko:K00021
KEGG ReactionR02082
KEGG Pathwayko00900,ko01100,ko01110,ko01130,ko04152,ko04976,map00900,map01100,map01110,map01130,map04152,map04976
KEGG ModuleM00095
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.hydroxymethylglutaryl-CoA reductase (NADPH) activity
EggNOG OGsCOG1257@1,KOG2480@2759
EC1.1.1.34
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons11
Model size4417
Cds size1923
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930375.0440714-UTR-H-paniculata_contig46:4779..69181622930375.0440714-UTR-H-paniculata_contig46:4779..6918Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46 4780..6918 -
1691481263.524388-UTR-H-paniculata_contig46:4779..69181691481263.524388-UTR-H-paniculata_contig46:4779..6918Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46 4780..6918 -
1622930375.2808049-UTR-H-paniculata_contig46:16658..170131622930375.2808049-UTR-H-paniculata_contig46:16658..17013Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46 16659..17013 -
1691481263.6284454-UTR-H-paniculata_contig46:16658..170131691481263.6284454-UTR-H-paniculata_contig46:16658..17013Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46 16659..17013 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930375.0590146-CDS-H-paniculata_contig46:6918..70331622930375.0590146-CDS-H-paniculata_contig46:6918..7033Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46 6919..7033 -
1691481263.5356264-CDS-H-paniculata_contig46:6918..70331691481263.5356264-CDS-H-paniculata_contig46:6918..7033Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46 6919..7033 -
1622930375.0762508-CDS-H-paniculata_contig46:8189..83381622930375.0762508-CDS-H-paniculata_contig46:8189..8338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46 8190..8338 -
1691481263.542758-CDS-H-paniculata_contig46:8189..83381691481263.542758-CDS-H-paniculata_contig46:8189..8338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46 8190..8338 -
1622930375.0906806-CDS-H-paniculata_contig46:8659..88511622930375.0906806-CDS-H-paniculata_contig46:8659..8851Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46 8660..8851 -
1691481263.5499249-CDS-H-paniculata_contig46:8659..88511691481263.5499249-CDS-H-paniculata_contig46:8659..8851Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46 8660..8851 -
1622930375.1047492-CDS-H-paniculata_contig46:9525..96871622930375.1047492-CDS-H-paniculata_contig46:9525..9687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46 9526..9687 -
1691481263.5573304-CDS-H-paniculata_contig46:9525..96871691481263.5573304-CDS-H-paniculata_contig46:9525..9687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46 9526..9687 -
1622930375.131158-CDS-H-paniculata_contig46:10111..104501622930375.131158-CDS-H-paniculata_contig46:10111..10450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46 10112..10450 -
1691481263.565163-CDS-H-paniculata_contig46:10111..104501691481263.565163-CDS-H-paniculata_contig46:10111..10450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46 10112..10450 -
1622930375.1435654-CDS-H-paniculata_contig46:11176..113081622930375.1435654-CDS-H-paniculata_contig46:11176..11308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46 11177..11308 -
1691481263.5737054-CDS-H-paniculata_contig46:11176..113081691481263.5737054-CDS-H-paniculata_contig46:11176..11308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46 11177..11308 -
1622930375.1775613-CDS-H-paniculata_contig46:11993..121341622930375.1775613-CDS-H-paniculata_contig46:11993..12134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46 11994..12134 -
1691481263.5846894-CDS-H-paniculata_contig46:11993..121341691481263.5846894-CDS-H-paniculata_contig46:11993..12134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46 11994..12134 -
1622930375.2107444-CDS-H-paniculata_contig46:12672..130241622930375.2107444-CDS-H-paniculata_contig46:12672..13024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46 12673..13024 -
1691481263.5950887-CDS-H-paniculata_contig46:12672..130241691481263.5950887-CDS-H-paniculata_contig46:12672..13024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46 12673..13024 -
1622930375.2287226-CDS-H-paniculata_contig46:13426..136061622930375.2287226-CDS-H-paniculata_contig46:13426..13606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46 13427..13606 -
1691481263.605546-CDS-H-paniculata_contig46:13426..136061691481263.605546-CDS-H-paniculata_contig46:13426..13606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46 13427..13606 -
1622930375.2473378-CDS-H-paniculata_contig46:15781..159001622930375.2473378-CDS-H-paniculata_contig46:15781..15900Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46 15782..15900 -
1691481263.613336-CDS-H-paniculata_contig46:15781..159001691481263.613336-CDS-H-paniculata_contig46:15781..15900Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46 15782..15900 -
1622930375.2610793-CDS-H-paniculata_contig46:16616..166581622930375.2610793-CDS-H-paniculata_contig46:16616..16658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46 16617..16658 -
1691481263.6208355-CDS-H-paniculata_contig46:16616..166581691481263.6208355-CDS-H-paniculata_contig46:16616..16658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46 16617..16658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46.11502.1prot_H-paniculata_contig46.11502.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46 6919..16658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46.11502.1

>prot_H-paniculata_contig46.11502.1 ID=prot_H-paniculata_contig46.11502.1|Name=mRNA_H-paniculata_contig46.11502.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=641bp
MSTFQMPAEQFLEQAFREGARFLISNASVLSGSVLAFVVFAAMTRMFSDS
EEDRPTNAKRVKEEPRPRWEVLRMLNYLVIALFVCSITYVVFNYRTMSHA
DSGNAGLFPILVIWSGCMAYFFGFFGISFLDTNAMARSPSSFGLSHLDHQ
LYTSRDGPGTNGGFIGAAPGGDGVSQSTMCAKETPSLGLGKSSSSNVSVS
AGGRVEGAIQDLPALGPIPEGDEFSSMTDDEVVMCVMSGKLKDHQLEMKL
GDHARAVTVRRSLFERRIGRSMANLPKEGMNYERIFGANCEIVCGYVPIP
VGVVGPLLLNGDQVFVPMATTEGCLVASTNRGCKAITQGGGCRAALLKDG
ITRAPCLRMPDAMAAAAIKEWCEAPENFDMIRDAFQSTTNFGKLKGLKVS
VAGRNVYLRFVCFAGDAMGMNMISKGVLAVIDRLQEMFPEMELVAISGNM
CTDKKSAAINWIEGRGKSIVCEARIPGKYVESTLKTTVKAMVETNIQKNL
VGSAMAGALGGFNAHASNVVTAVFLATGQDPAQNVESSTCLTLMEQMENG
DLLVSVNMPSIEVGTIGGGTSLPGQAACLDIIGCRGATRAPGCPGDNAQQ
MAKVVAAATLAGELSLVAALASNQLVRAHMQHNRKKQPTA*
back to top

mRNA from alignment at H-paniculata_contig46:4780..17013-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46.11502.1 ID=mRNA_H-paniculata_contig46.11502.1|Name=mRNA_H-paniculata_contig46.11502.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12234bp|location=Sequence derived from alignment at H-paniculata_contig46:4780..17013- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAAATTGGCAACAGGACGATTCACAGGCACATCCAGCCAACCTTTCCT TCCGGCTTTGCTTGTTCTTGTGTGAGGCTGCAGCCGTGACCGACAGCGCA AGGAAGCCAGAGCACACGATTATACTATATTTTTCCTACTAGGAGTATAT CTGCGCAATTCAGGTTGGCCAGAGAACGTGAGGATCTGCTGCAAAACGGA AGGAACCGAAGGCGGTATCGGAGTGTAAGTCGGAAATAGGAGGCTTCGAA CCATAGACACAACGCGCGCAGTGTTCCGCGTGTTTAGAACGGAGTTCCCT GCCGTAGCCCAGAGCAAGCTGGAGTCGGAGAGTGTTGGGCAGGAGCACGA GAAAGATGAGCACTTTCCAGATGCCGGCAGAGCAGTTCTTGGAACAGGTT AGTGGGTCTTCGATATACCGCATACAGCAGAACAGTTTTTTTGCATCGTG GTTCAGAATAACGATAGTGCCGCTATCGGGGAATTGGGAACAATGAAGAA ACGGGAACCGCCCATCACTTGCTGGTATGAATGCAGTCATGGTTGAAGGT TTGAGGCGAGCATCGGTTTGCTCGAGATCTTACACTTTCTGTTGCATAGG TGCTCCGGAGGTTGGATGCGGTGCGACTCCCATTTTCCGGCGAGGCGCGT TACTCGTTCATTAGTTTGTAGTTCCGGATATTCGGCATGTGTGCTGAAGT GAGTGTGCGGGATCGTATATTTAAAAAAAAAATGAACCTTCGCCTATGTA AACAGTTATTAGACCACCAAGGTTGCCTGCAATGTAGTGTTGATGCGTTG TGCACACCTACACAGCGTTTCGCTCCGCTCACGCTACATTTCCAAAGAAC TGAGCGCACCATAGTTTCGTCATTACCCCTTTTTCTCGGTAGGTGTCATT CTGTCGGTATACTCGCCTCCCGCCTTATCTATCCCTTGATGAAATCAACC ACAAATCTCACGATCCCTAATGCCCCATGCCTCGAACCAACATCTCCTTG CTGCATCACGTTATTTCTCTTCGGCGGCCATGTACTTGTTATGGACACAA CAATTAATCGTCGCGCGATGAACGGCGTATCTGTCATGCATGTCCTCTGG GGGAAAATACCAGGCCTTTAGAGAGGGTGCTCGGTTCTTGATTTCCAATG CCTCGGTGCTAAGCGGGTCGGTGCTAGCTTTCGTGGTGTTCGCCGCTATG ACGAGGATGTTCTCGGACAGCGAGGAAGACAGGTACGTAGGTAGGGTAAC TGACGAGACTCGTAATTACCAGTACGTGGTCTTGATGGTATGGGCTCGGG GAGCCCCCGAAGGTACATTACTCTCTCACTAGATTTAGCAGTGCTCAATC ACAATCTCACCGTTATCGTTTTCCGCAACGCAGACACAACCACATTGAAC GTTGTCCAACGACCGCTAAATAGGTCACGTTATAGTTACGCAGCTACTGA ACTTAGCCTCAAGTACTGTTTGTGTGGTAAGTCAGTACCTCTTGTGAGGG AAGCCTCGCTGTGCAGGTGGCGTCTGTTAGTATGGTCTGTGTCACTGCGT GATATGAGAGAGTTGAGAAAAAAAATGGACGAGGTATTCATTGCTTTCGG TATTGGGTTGAGGCGTTTAAAATGAGTGCCGCTATTTTCTATTCCGAGTT CGGTGTCCGAGGAAGGAGCTCAAGGCTGTTAGAATAATTCTTGCTTCGGG TGCATACTTGAGCGAGACTTCGTTTCAATTCTGCAGTAGAATAATTTGTC GCCGACGGAGACTGTCCTATGTGGATTCTTGTGTATTTCGCTAGTCCATG CCATACGTGCATTTGTTTCATAACCTGTGCAGTGCAGCCTGAAATAGTCA AGGAAAGGGAATTTTAGGGCTTCAGCAAGATTCTCCGATTTCCAAGTCAT CCGTGTAAGGGACACTTCAGGTAGAAGCCCTGTGCCTAATATTGTGCTCA ACTCCGCGTTTTAGACAGTGGCTTGTCTGAGTCACCACGCCACGCCTTGG CGGGCCTCAGTTACCGAAGTTTCTTGGGCGCGTTTCAACTAGCATCCTCC TCACTCTATTTTTCAAGGAGATGCCTGGTCAAGTAGGCAAACCGTGCCCA GCAGCTAATTAATAATAATCAATAACTGTCCGAAAACAACAAAGGTTGAA GATTTCGCCCAAGTGACTTCGCAATCCAAAATCTATGAAACATGCCACCT TGCTGATCAGAACATGCCCAAAGAACTACTGAAGGCATTATGAGCCAAAG AGTAGGTGATCGGCAAAACAATTTTGATCGCACACTGTTATTATTAGGAG CAATTTTTGTTGAAGTGGCAGGCATGGGTGTTCTCTTGGCCGAAGCTTGC CATTTTATCCAACTCGTTCCGGGAACGCTTTGCGTACCCAGGACGGATTT CCATTTCTTACTAAATATGTTAACATCAACTGCACGTATGAAGCACTACA TTCGCCCAATGTGCCAGTCACGGTTCGTCATGGGCGGCTGTGTAACTGGT TTGTCCAATTCCACTTCTGATGCCGCTTGAGAAACTTGATTCTCGGGGAA GATGTTGACCCAACTAACATTTCGCTTTTGAACAGCAGTGGGATTTTATT TTATGTTTGATGTATAACCCCTTTTTTGGCGAAAATATCACGTGTGCGCC AAGCTGCGGAAGTGGTGTGGGCAGACGTGGAGACGAGGTGCCTCGCCGAG GAAAAGTTCGCGACATTTTCGTTCGCATATAGCAGGGTTGAGTTCCGCAA AACTTTTAAGCGGGCAAATGATTTTCACGAAAGAGTGGCAGTAATCGCCT GAGTTTTTATATGAGCCTCTGTATTCTAGTGCCCCGGACCATCTGCGACC GCTGATAACACCTTTAAATCAAACGGACAGGGGTGGATACTTTATTCCAT GTGCTTGCTTATTCAAGAACTAGGCCGAATAATTTTCAGTTTTTGGTGAA AACCAATCGCATGTATTCGTATTTCAGTTGTTCGGGGGGTCCAAGACTCC TGGAATTGTTTTGCTGTTACATTTTTCGATGCTCGGCGGACAAGCCATAT ACTAACGCCCGACACGACACGCTTGTGGGGTATTCCTTCCCGCAAAATTA TGTCGGATACAGGCTAAGAATCTGTGGCATTCGAGATAACCCCGCGGTAT TATGTGTTCCGACGCTGTGCTGACTTGAACATGGTTGTTTACAAATGAAA ACAAATGAACACAGTCACAGACCTAAAGAGGGGAAAAAATGAAAACCTCT CTAGCAGGCAGCGTTGATATTTGATCTCAACTCCTGGATCGCAAATCAGA ACACCAAAACCCCAGCTTCGTGGGAAGTGCAAACAGCACAGCGCAACTTG CGTTTTCTCAATTTATAACGCCTGAACATATAAAAACGACCGTGATGATG GAATCAGGCCTACCAATGCCAAGCGCGTGAAGGAGGAGCCGCGGCCTCGC TGGGAGGTTCTTCGCATGCTGAACTACCTGGTGATAGCCCTGTTCGTCTG TTCCATCACGTATGTCGTCTTCAACTACCGCACCATGAGTCACGCCGACA GTGGTAACGCCGGACTATTTCCAATCCTGGTCATTTGGTGAGCTTACCTT TCATTTTACTTGATGGGTCGTGTTGGAAGAGCTTTTCAGACACGGGCTCG GTGCAATACTCGAGTGACTGTTAAAAATGGCTCTTGATGGAAATATTGAC GCACTGACTGACTGCTTTTCGAGAGCTCAGCGAGTCGGGTATGCATGAAA TAGGAAACGATTTAGTGTGCAGCGTTCTACGAGGCAAAGTAATGACAAGA TGACAAATGTCACACATCCCTACGGAATTTATCCTGTATCACTCCAAAGG CCAACTATGCGATTTAATAAACGACAAAAAAACGGAACAGTATGGTCTTG CACTTTCCCGTCTCTCTCTTGTCAATCGTATCTCCTCATTTCAGCTTCGC ATTCAAGATATCCCCACCGACCCCTCCAACATAATGCAGGTCTGGCTGCA TGGCGTACTTTTTCGGATTCTTCGGTATCTCCTTCCTCGACACCAATGCC ATGGCCCGTAGCCCATCTTCTTTCGGCCTTTCTCACTTGGATCACCAGCT CTACACATCGCGCGACGGCCCTGGGACGAACGGGGGCTTTATAGGTGCCG CGCCGGGCGGCGATGGTGTCTCACAGAGCACCATGTGCGCTAAGGAGACT CCTTCGTTGGGTTTGGGGAAATCCAGCAGCAGCAACGTGAGCGTCAGTGC TGGCGGTCGAGTCGAAGGGGCGATCCAGGACCTTCCCGCGCTTGGGCCGA TCCCCGAGGGCGACGAGTTCTCGAGTATGACGGATGATGAGGTGAGGCGG GACAGGAAACGACGGGCAAGACGTAGGTACTGTGCCATCGCTTTAACCTA CCTTGTGCCTATCACTGCGGCGTGAGCTTCTCGGTCCTGGGGGTCTGCCT GTGTTGCAACGGTTTGCGACCTGTGGAATCTTGCAGTTCTGTGTAGTGAT AAGAGGGGGTAGAGGAGGAGTGGGGTATCGATTTATGACAGATACGGTTG CCCCTACCTACCGCAGTGAAATCAGACCCGCCTGTCAGCTAAAAACATGG CGGGGAGAAAGTCAAGGTTGGGACTGATCGGGAGAACACGCCTGAAATTA AAGACACGAATTTTGCTACCCTCAAGAAATGGTTCTCTTTATGGTATTCC TCAGGAACAAGGGGGGAGCGGAGCGAAGGGGTTCGCACGCTAATGTTAGT GGAAGGCCATTAGCCTACCCAAGACAGAACCCGCTGTAATGGTATTTGTC TGTGCAAAAACGAACACATGCGTCTTTCATGGCCTAACAAGCGTGAAACC ATGGTCATCCCACGCTTGCCCTGTTGCAGGTTGTAATGTGTGTAATGTCA GGCAAGCTGAAGGATCATCAGTTGGAGATGAAACTAGGTGACCATGCCCG AGCGGTGACGGTGCGACGAAGTCTGTTCGAACGCCGCATCGGTCGCTCCA TGGCGAACCTTCCGAAGGAGGTAAATTCATTATTCATGTAGGAGCGATCA AATGTTGTTTGGGGTGCTGGTGGCCGTGTGTGCTATGAAAGGTGCTAGTG CTTGTATATTCCCTTCCCCCTGAACTAAAAATGAAGACACTTGCGAATAT TTCGATCTATGATGGATTATGAAAATATGTTTTGTATCGAAACTTTGATG CGCAGGTACACTGCAGCATGGGATCTGGAGCTCACTATGACCTTTTATTG TCCAAAATATTCGGGTACACAAACTAGTGAGATGGAAACCAAAAGGGCAA TATTTGCGACGTTTTCACGTAAACGCGATATTCTGCGATCTCACATACAT TGGTCTGTTTCGACTGTTGAAAAATATTTTTTGGGTTTGTTTTTCGAGCT TTTTTTTTCACAAGGGTCGGTTAGGTTGTTTCGGGTAGCATGTTTTGTTG TGTTTTGTCTACGTCATGCTCTATTTGCGATGGAGTTGTGTTTTCTGTGC GTTTCTGTATGTGTTTTGTGTTGAACCCATTGCCCTCTTCGCAGCTGCTT CGAGCACGCTCTTTGTTTCAAGTGTTGACTCGCAACTGGCACTGCTTTAT ACGAATTAACTATGCAAATTTCTGCATAAAAATAATCTTGAGGGACATTG ACTTACGTTGATGTATTTTTTGTATTTTTTGTGTTTTTTTACTCTTCCTC ATCAGGGGATGAACTACGAGCGGATTTTCGGCGCAAACTGTGAGATCGTG TGCGGGTATGTGCCCATTCCTGTGGGGGTGGTGGGCCCGCTGTTGCTTAA TGGCGACCAAGTTTTCGTTCCAATGGCCACTACGGAGGTGACAAAAAACG TACATGTACTGTTTTTTATACGACTCTGACTGGAAGATGACCAGTTTGGA GGCAAGAGATACATGGGCAGAATAAACACTACACACACCTTCAACATGTA CTGGTCGAAGCACAGATTAACACCATCGATATGTTGAGGTCTAGAGGTAG GTTTTAGGATGATGAGGCACTCACGACATGCAGCAGTAAAGATGATACTA TTTCGAGACCCACAACGGCGTCGAGAAAACACGTAACTGCAAAAGCTCAT CTGACAGTTAGAAGTATTCCCGCAATTGTACCCAGGGGCACAACGTCCGC TTCCCCGGATTATGAAACGTCGAAATCACGTCGCCTGCAAGAAACCTTCG GATTTTCTCTACATTTTCAAAGTCAGTCGGAGTGTGGGGGCGCATAAATG ATGTGTTCTCCTAGGGCTCAATTGCTGAAAAGGTAAAGGAGGGGAATAAG ACATCCACCGTGTGAAATTATGGGCAACAAGGTGTGTGTGGCGTTTTTTT GTAACTGGTATTTATAAAAACCCTACCTTATCTCTAGATCTGCTTCAGTA GTGACTTCCTTTTTTTTCGTTTTTATGTCAGTATTATCGATTTTTTTTTT TTCAAACCTACAGTCTTTGATATTTCTTCTTCGTTGTTGTATTCATGATG TTCGGTATGTGTCGCCTGTCTTCAAATTGTCTGTTGGTCTGCTGGCTGCT TGCGTTATTGTAGGGATGCCTGGTTGCGAGTACGAACAGGGGCTGCAAGG CCATCACCCAGGGGGGCGGCTGCCGAGCGGCGCTGCTCAAGGACGGAATC ACGCGTGCCCCTTGCCTCCGGATGCCCGACGCCATGGCAGCCGCCGCAAT TAAGGAATGGTGCGAGGCGCCCGAAAATTTTGACATGATCCGTGACGCAT TCCAATCGACCACGAACTTCGGAAAGCTAAAGGGGTTGAAGGTATCGGTC GCCGGGCGCAACGTGTACTTGCGGTTCGTTTGCTTCGCGGGAGACGCAAT GGGGATGAACATGATTTCCAAGGGAGTGCTGGCAGTCATCGACCGTTTGC AGGCAAGATTATTTTTGCTTTCTCGCGCGTCTGTGTGTGTGTGTGTTAGT GCGCGTGCTTGACAGCATGTAAATTTAATAAGCTTGTATTAGAAACGGAT CAAGGTGGTGTAGAGATTACCACATTTTGTAGAGTTCGGGTGAACTGTGT TGCCGAAGACCGCGTGAAAAGCATACGCGTCAAGCTCGCGTGTGTAGTAT CTCCTTTAGGTAATAGTTGGGGAAGTTCATGTAGGTCATAAGAACAAGTA TTTATTGCAGCGTTTGGTGAAAATGGCCTCCTCATGAGCATTTTTTTTTT TCAGAATTTTGTTCAATTGTTTAACGAAGTAAATCGACAGATCTTGCACA ACCTGACTGAATATTTTAGATGAAAGAATCTGGTGACCCTGTATACCAAT CAATACCTTTTCTTGGTGGCTTGTAGGAGATGTTCCCTGAGATGGAGCTC GTGGCGATCTCCGGCAACATGTGCACTGACAAGAAATCAGCGGCGATCAA CTGGATTGAGGGTCGCGGCAAGTCCATCGTATGTGAGGCGCGCATCCCGG GGAAGTACGTGGAGAGCACCCTCAAGACCACCGTCAAGGTATACACTTAT TTGTTAGTTTCCACAGGAGAGCAATTTATTGCACTAAATTGAAAGGCTCG TGGGTATACACGGCTGTTGAAGGCTCTTTCAACTCATCTCAGCTGGGGAG AGAAAAGAAAAGATCTCTCTGGTTTTTAAATAGCGGGAGTGACAGAGTCA AAGGGGCCTACGCCCAGTGGGTGCAACGAGGAGTGCGACGGAGATCTATA CAAGTGATATATGGATGGGTTTTCTTGTTTTTCGTTGTTGTCATGAATAC TTCGTTGATTATGCGATTGAATGGGTTGCTCCAGTCTGAGATCTACTTGT TGTCGTCTAGTTGAGTCGCAGGGAAGTTGCTCTGCATTTACTACCTGTAG GGCACACCTATCGGTACTTCTTTCATGATTATTTTTTTATTTTGAAAACT TTGGCGGCTGCTGACTGTGGATATGGCAAACGAGTGATGAGTAGGGAAGA AAAATTAGTGTAATCTTCTTGTGGTAGCTTTTAAGGTAAGCTAGAGTGAC AAGTGTCTTATACTATAAGCAAGTTTTAATATGTCTCGCTAACACCTCGT ACCCGCACGGTGACATGAATCATGTATGTCGATAGCAATGCACCGGGACG TGTACGTGTTGCCTACATTCTCTTTTCAGTTTCCCCTCTCTCGTTTTTTT GCTTTTTTTTAGGCGATGGTGGAGACTAACATCCAGAAGAACCTGGTCGG TAGCGCCATGGCCGGAGCGCTGGGTGGTTTCAACGCCCACGCTTCTAACG TGGTGACCGCAGTGTTCCTTGCCACCGGGCAGGACCCCGCTCAGAATGTA GAGTCAAGCACTTGCCTGACTCTAATGGAGCAAATGGAAAACGGGGATCT ATTGGTGAGAGACGACGCTTTCATTTTTTTTTTTTAAACACTCAGAAGCG GTTGAAGGCTTCGCTCCTGGGTGCGTTAGCTGTGGGTAGAGCGCCTCCTG TGTTTGATTGCTGTTCCGTGTTTTTTTTAAGGACGTCTGTGTTGGTTTCG GGGAGATACATTTTTTCTCTCTGAGTTCGTCACCGATTACCGTCAGAACA GCAGATGTCATACATGTGAAAGCACAAAATGTACATACCTTGTTCCGAAG TGCTCCTTACATGTAGTCATGTGTATTGAATGCGAATTGCGTCTCGACAA AATGTGCACCGACACGCACGTACAGGTATCCGTGAATATGCCCTCCATCG AGGTGGGCACGATCGGAGGTGGCACCAGTCTGCCCGGACAAGCAGCATGC CTCGACATCATCGGGTGCCGAGGAGCGACGAGGGCACCGGGTTGCCCAGG GGATAACGCGCAGCAGATGGCCAAGTACGCATCATTTTTTTCTTGAGTGC TTGCATGTTGAATACTTGACCGTTTTTATTCACTCTGAACCTAAAAAACG GGTAAGACTAAGACAGTTTAACAATAATACGGTCGTGTGGATCCATCGCT GTTGAGGCAATCCATTACAACTATTACGTTCAGCAGAAAGACGTCCTTGT CAGGGTTATTCCACATCACTGCACCACTGAAGGCACCTTAAATTGCATGC ACAGTTGCTGTACAGGGGAGCTGAGATCTCCTCTCAAACACTCTGATTGG AGTATAACGAGTGTCACATAAGTACCGTCGGGTCGACAAAGTCAAACTTG TGTTCGTTGCAGATTTTTTCGTGTGGTTGGGACACCACGTTGTGTCTTCG TAGAGGTTTAGTAGAGTTTTTCAGTAATTGCAAATGCTGCTACCAGATAT GAGCTTGGTTTAGAATGCCTTCTGTCCTATTAAATTTAACCGAGTTACCG GCTTTACCCAAAACGAAGGGTCCGTTCAGTTTTTCTGTATTTTTCACCTT TCGTTTCTCGAATTACTCCCGAATTTTAATGCCCACGAAAACCCAGCTGA TTATTCAGGTTGCCAAAATTTCGTCGATCAATAGCCCCCAAAACTTATTG TTTGCGGTGGTGTCTAGCGTAGCTGGGCAAAGAAAATTTATTTCCCTCGG TAGCGGTACGAGAAAGAAATTGGAACATCTTCGCAAGGACGACGTTTTCA TCGTGCGCATTATCTCTCGATCCTGAAAAAAAAAAAGTTATTTGGACGAA AACTATGGTCTGTTTTACCCGAAACCTTGAGCTGTTTGACATGGGGGTAC TGTAGCCATATATTAGAATGTACCGTCCAACTCGCCTGGATGCGGACAGT CAAATTCCCTTCCAATCCTGCTGTATTTCTTGGGAGATTTCCAGCATTCA TGCTAAGGTGATTTTTTTTTTTCTTCTAGAGCTGACTGACTATACCGATA CTTGTCTCATGCTGACTGCTCCTAATTTAATGGTGAAACTATGGGCATTT TTTTTTTTTTTTCAGCTTTCACCGACCCCATCGCACTTTGACTGCTCTTG ATTTGGTGGCGAAAAATCACAGCATGTAACGTGTTCTCTACTCCTCCGTT TGTTATTTGTTGTTTTCCGTTCTTGGGAAGAGTTGTGGCGGCAGCGACGT TGGCGGGTGAGCTTTCCCTGGTGGCCGCCTTGGCCTCCAACCAGCTCGTG CGTGCACATATGCAACACAACCGCAAGAAACAGCCGACGGCATGATTTGT ACGCGTCTAGTCTGTGATTATCTAGACTTCCCGCCTTTTTATTTCTTTCT AGGTTTTACAGGTTCGGTAATATGCTAGATGGGCGGATCGATAGATATCT ATCGTTAGTAGCGGTGATCGTTTGCTGTGTGGGTCGAACGGTGGATAAAG TCCGTGTTGTGTTTGAAGACGTCGTTAAATCGCCTCTCATACTACACGGG CGAAGGGGAGAAAGGGAAAGGAAAGGGAGGCAACATTATAATGAGAAAGT CAAGGCTTGCAGCGCAGGGCGGGGGCAAGAGTCCCATAGATGATGTGCCA AATGTAACACAGCAAACATATTAATGGAAGATGGGTCGTCGCCGTCTTTT GAATTGTGATGATGTTTATGGTCGGATGAGATGGAGATGGTCGAAGCAAC TTTTTGCCGTCAGGCCGGGATAGGGCAGATACAGGTGTCGATTGAGAAGT ACTGCGTTGTTCGTATTTTCACGGATGCGGTGCTGATGTGACGGGGGGCG ACATAGCTCTTCCCCCGAAGCGTTTTTTTTATTCATGATGAGATGCATGA CGGATAGCTTTGTTTGGCTAGGTGGTGGGGTTGGATCGGAAAGGCAGAAA ATGAGAAGAGTGCGAGTACCGCGGTGTCTGATATGCCTTCTGTCTCTGCT TTTATCTCCCGCGCCGATCGGGTTATTGATAAATTGGTCGGCCTATCAGC TAAGCTTGTGCCTTGTTTCGTTCCTCTAGGATATGCGCGAGTACTTTTGT TCTTTGACGGTGCCGTGCCTTCGGATGGTCTGTGATTGATTTTCGTTTGT TCGGGGTGCTCCTATAAACGAACTCATACATCCATGTTGGATTGTAGACA AAAACGGTAGTGCTCATCAGGATCGACGCCTCGAGTAAGGCAAGATCTTC CGTATTGCCTTTTTTTTTTGCAGTTAATGCATGCTTGGTGTCGGTGATCC CGTGGTTTGGAGTCCAATCTATTACCGTCTCTTTTCGAATTTTTTTTGTC ATGTCGACGTGGTGTTTTTGTTGTACGAGTAGCTTTCTAAACCGACTGGG TATCGATACTCGTCGCTCTATCTGCTTTGGTAAGCCATCAATCTGCCGTG TTTGTATAGAGTTGACTCGCTCCCACTTGGTGGCGAGTGCCGTGTTCATT TTTCTGTTTCTTGCCTTGTGTGTGTTTGTATCGGTATCTACTCTGTGAAG CTTGATCGAACCACGACGTTGGATCGTTTCTCAGTGACATTCTGCTACTG CTTGACAGTGAAGAAGCAGCAAAGCATGGAACCCAAGTCAGTACAGAAAG TATTTTTGCTGACTGCAAACCATGGTCGTCTCGACTGGAGTTATTGTGTT CTTTTTTATCTTGTTTGGATGATGACGCTTGATTTTGGGTCGAAAAGTGG TACCTCAAAATTAGCCCCTCCTGAAGCGGCATAGGCTCATTGGCTCAGAG GTGGTGATATGGAGTGTTCGAGGTTTGCAAACTTATTACTAGTAGTTATA TATATAGAGGAGCCGAGGAAACTGACTGAGATCGTTTTCTCTTTTTTTCG ATGGATAAAGGATAATGACGATAAGAGTTTTCGTGATTAATTCAATATCG TTTTTCAATAATTGAAAGGGCATATACCTTGGAGCCTTGTTTGTGCAGTA GCATATTTTGTTTCATCCATGACCCCTACCTAACCTGCCCCTAGGAAGTA AAATGTTCAATTTTGGACTAATTCAGCTGTTGTATGGTATGGAGAAGGTA AACGCTCACTTGTTGTGTTGATCACTTTGAACTTACAGCCGTTTGACGAA AGGGATAAGATGCTTGTAGTTTTCTCTTTGGTTTACGTTACTGTAAGGAA GCTTTTGATTGGTCCTGATAACCTTGGACTTGGCCAGGAAACTTGCTTTG AACGACGGTGATCGGCATGTTTTGAGTTATTTTGAGCTGTTTCACGGCGC GACTACTCATGAAGTGTTCCAAGGATATGGTCTTGAATTTTGACATGTGG ATCAATGTAGAGTCGGAACGGGGATTACTCGAGAAGTACCCATGAGGTTA TTCGACATCGCTAAGTGGTTATTTGTATTTTCCGCATGTCAGGTACATTA GATATGCAATCGTCTTTTCATGAGCAGACGTGAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig46:4780..17013-

>mRNA_H-paniculata_contig46.11502.1 ID=mRNA_H-paniculata_contig46.11502.1|Name=mRNA_H-paniculata_contig46.11502.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3846bp|location=Sequence derived from alignment at H-paniculata_contig46:4780..17013- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCACTTTCCAGATGCCGGCAGAGCAGTTCTTGGAACAGATGAGCAC
TTTCCAGATGCCGGCAGAGCAGTTCTTGGAACAGGCCTTTAGAGAGGGTG
CTCGGTTCTTGATTTCCAATGCCTCGGTGCTAAGCGGGTCGGTGCTAGCT
TTCGTGGTGTTCGCCGCTATGACGAGGATGTTCTCGGACAGCGAGGAAGA
CAGGCCTTTAGAGAGGGTGCTCGGTTCTTGATTTCCAATGCCTCGGTGCT
AAGCGGGTCGGTGCTAGCTTTCGTGGTGTTCGCCGCTATGACGAGGATGT
TCTCGGACAGCGAGGAAGACAGGCCTACCAATGCCAAGCGCGTGAAGGAG
GAGCCGCGGCCTCGCTGGGAGGTTCTTCGCATGCTGAACTACCTGGTGAT
AGCCCTGTTCGTCTGTTCCATCACGTATGTCGTCTTCAACTACCGCACCA
TGAGTCACGCCGACAGTGGTAACGCCGGACTATTTCCAATCCTGGTCATT
TGGCCTACCAATGCCAAGCGCGTGAAGGAGGAGCCGCGGCCTCGCTGGGA
GGTTCTTCGCATGCTGAACTACCTGGTGATAGCCCTGTTCGTCTGTTCCA
TCACGTATGTCGTCTTCAACTACCGCACCATGAGTCACGCCGACAGTGGT
AACGCCGGACTATTTCCAATCCTGGTCATTTGGTCTGGCTGCATGGCGTA
CTTTTTCGGATTCTTCGGTATCTCCTTCCTCGACACCAATGCCATGGCCC
GTAGCCCATCTTCTTTCGGCCTTTCTCACTTGGATCACCAGCTCTACACA
TCGCGCGACGGCCCTGGGACGAACGGGGGCTTTATAGGTGCCGCGCCGGG
CGGCGATGGTGTCTCACAGAGCACCATGTGCGCTAAGGAGACTCCTTCGT
TGGGTTTGGGGAAATCCAGCAGCAGCAACGTGAGCGTCAGTGCTGGCGGT
CGAGTCGAAGGGGCGATCCAGGACCTTCCCGCGCTTGGGCCGATCCCCGA
GGGCGACGAGTTCTCGAGTATGACGGATGATGAGGTCTGGCTGCATGGCG
TACTTTTTCGGATTCTTCGGTATCTCCTTCCTCGACACCAATGCCATGGC
CCGTAGCCCATCTTCTTTCGGCCTTTCTCACTTGGATCACCAGCTCTACA
CATCGCGCGACGGCCCTGGGACGAACGGGGGCTTTATAGGTGCCGCGCCG
GGCGGCGATGGTGTCTCACAGAGCACCATGTGCGCTAAGGAGACTCCTTC
GTTGGGTTTGGGGAAATCCAGCAGCAGCAACGTGAGCGTCAGTGCTGGCG
GTCGAGTCGAAGGGGCGATCCAGGACCTTCCCGCGCTTGGGCCGATCCCC
GAGGGCGACGAGTTCTCGAGTATGACGGATGATGAGGTTGTAATGTGTGT
AATGTCAGGCAAGCTGAAGGATCATCAGTTGGAGATGAAACTAGGTGACC
ATGCCCGAGCGGTGACGGTGCGACGAAGTCTGTTCGAACGCCGCATCGGT
CGCTCCATGGCGAACCTTCCGAAGGAGGTTGTAATGTGTGTAATGTCAGG
CAAGCTGAAGGATCATCAGTTGGAGATGAAACTAGGTGACCATGCCCGAG
CGGTGACGGTGCGACGAAGTCTGTTCGAACGCCGCATCGGTCGCTCCATG
GCGAACCTTCCGAAGGAGGGGATGAACTACGAGCGGATTTTCGGCGCAAA
CTGTGAGATCGTGTGCGGGTATGTGCCCATTCCTGTGGGGGTGGTGGGCC
CGCTGTTGCTTAATGGCGACCAAGTTTTCGTTCCAATGGCCACTACGGAG
GGGATGAACTACGAGCGGATTTTCGGCGCAAACTGTGAGATCGTGTGCGG
GTATGTGCCCATTCCTGTGGGGGTGGTGGGCCCGCTGTTGCTTAATGGCG
ACCAAGTTTTCGTTCCAATGGCCACTACGGAGGGATGCCTGGTTGCGAGT
ACGAACAGGGGCTGCAAGGCCATCACCCAGGGGGGCGGCTGCCGAGCGGC
GCTGCTCAAGGACGGAATCACGCGTGCCCCTTGCCTCCGGATGCCCGACG
CCATGGCAGCCGCCGCAATTAAGGAATGGTGCGAGGCGCCCGAAAATTTT
GACATGATCCGTGACGCATTCCAATCGACCACGAACTTCGGAAAGCTAAA
GGGGTTGAAGGTATCGGTCGCCGGGCGCAACGTGTACTTGCGGTTCGTTT
GCTTCGCGGGAGACGCAATGGGGATGAACATGATTTCCAAGGGAGTGCTG
GCAGTCATCGACCGTTTGCAGGGATGCCTGGTTGCGAGTACGAACAGGGG
CTGCAAGGCCATCACCCAGGGGGGCGGCTGCCGAGCGGCGCTGCTCAAGG
ACGGAATCACGCGTGCCCCTTGCCTCCGGATGCCCGACGCCATGGCAGCC
GCCGCAATTAAGGAATGGTGCGAGGCGCCCGAAAATTTTGACATGATCCG
TGACGCATTCCAATCGACCACGAACTTCGGAAAGCTAAAGGGGTTGAAGG
TATCGGTCGCCGGGCGCAACGTGTACTTGCGGTTCGTTTGCTTCGCGGGA
GACGCAATGGGGATGAACATGATTTCCAAGGGAGTGCTGGCAGTCATCGA
CCGTTTGCAGGAGATGTTCCCTGAGATGGAGCTCGTGGCGATCTCCGGCA
ACATGTGCACTGACAAGAAATCAGCGGCGATCAACTGGATTGAGGGTCGC
GGCAAGTCCATCGTATGTGAGGCGCGCATCCCGGGGAAGTACGTGGAGAG
CACCCTCAAGACCACCGTCAAGGAGATGTTCCCTGAGATGGAGCTCGTGG
CGATCTCCGGCAACATGTGCACTGACAAGAAATCAGCGGCGATCAACTGG
ATTGAGGGTCGCGGCAAGTCCATCGTATGTGAGGCGCGCATCCCGGGGAA
GTACGTGGAGAGCACCCTCAAGACCACCGTCAAGGCGATGGTGGAGACTA
ACATCCAGAAGAACCTGGTCGGTAGCGCCATGGCCGGAGCGCTGGGTGGT
TTCAACGCCCACGCTTCTAACGTGGTGACCGCAGTGTTCCTTGCCACCGG
GCAGGACCCCGCTCAGAATGTAGAGTCAAGCACTTGCCTGACTCTAATGG
AGCAAATGGAAAACGGGGATCTATTGGCGATGGTGGAGACTAACATCCAG
AAGAACCTGGTCGGTAGCGCCATGGCCGGAGCGCTGGGTGGTTTCAACGC
CCACGCTTCTAACGTGGTGACCGCAGTGTTCCTTGCCACCGGGCAGGACC
CCGCTCAGAATGTAGAGTCAAGCACTTGCCTGACTCTAATGGAGCAAATG
GAAAACGGGGATCTATTGGTATCCGTGAATATGCCCTCCATCGAGGTGGG
CACGATCGGAGGTGGCACCAGTCTGCCCGGACAAGCAGCATGCCTCGACA
TCATCGGGTGCCGAGGAGCGACGAGGGCACCGGGTTGCCCAGGGGATAAC
GCGCAGCAGATGGCCAAGTATCCGTGAATATGCCCTCCATCGAGGTGGGC
ACGATCGGAGGTGGCACCAGTCTGCCCGGACAAGCAGCATGCCTCGACAT
CATCGGGTGCCGAGGAGCGACGAGGGCACCGGGTTGCCCAGGGGATAACG
CGCAGCAGATGGCCAAAGTTGTGGCGGCAGCGACGTTGGCGGGTGAGCTT
TCCCTGGTGGCCGCCTTGGCCTCCAACCAGCTCGTGCGTGCACATATGCA
ACACAACCGCAAGAAACAGCCGACGGCATGAAGTTGTGGCGGCAGCGACG
TTGGCGGGTGAGCTTTCCCTGGTGGCCGCCTTGGCCTCCAACCAGCTCGT
GCGTGCACATATGCAACACAACCGCAAGAAACAGCCGACGGCATGA
back to top