mRNA_H-paniculata_contig45995.11501.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45995.11501.1
Unique NamemRNA_H-paniculata_contig45995.11501.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig45995.11501.1 vs. uniprot
Match: A0A485L7G2_9STRA (Aste57867_16617 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7G2_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.100e-6
Identity = 36/110 (32.73%), Postives = 55/110 (50.00%), Query Frame = 1 
Query:    1 WISDSGATGHATPSAAHISSYRQVKETLRIASGQVIPIVGRGNLTMTFRTS--DGNASLAVLNVA-----HAPELHYNLFSLRKVADAGHKYVGDGDRINVYLKTGGVLA 309
            WI DSGAT   TP+    S Y   K++LR+A G+++ ++G G L + F  S  D  A +   NV      H P+L +NL S+       H  + DG ++    +   VL+
Sbjct:  365 WIIDSGATASTTPTRTFFSKYVPCKQSLRVADGKMLAVIGYGELCLRFNLSEPDPPAQVRKGNVLFTFGLHCPDLKFNLLSV-------HHALADGFQVTFPTRHACVLS 467
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BLAST of mRNA_H-paniculata_contig45995.11501.1 vs. uniprot
Match: H3H469_PHYRM (Retrotran_gag_3 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H469_PHYRM)

HSP 1 Score: 50.8 bits (120), Expect = 6.460e-5
Identity = 28/86 (32.56%), Postives = 46/86 (53.49%), Query Frame = 1 
Query:    1 WISDSGATGHATPSAAHISSYRQV-KETLRIASGQVIPIVGRGNLTMTFRTSDGNASLAVLN-VAHAPELHYNLFSLRKVADAGHK 252
            W  DSG T + T S       + +  +T+ +     IPI+G+G + MT   + G+  +  L+ V +APEL +NL S+R+  D  +K
Sbjct:  381 WTIDSGCTRYVTSSPHWFEDLKPIIGKTITVGGNHQIPILGKGTVNMTVTDTKGSKRIISLSDVLYAPELKFNLLSVRQAVDGDYK 466
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45995.11501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A485L7G2_9STRA2.100e-632.73Aste57867_16617 protein n=1 Tax=Aphanomyces stella... [more]
H3H469_PHYRM6.460e-532.56Retrotran_gag_3 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45995contigH-paniculata_contig45995:436..783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.0
Seed ortholog evalue2.1e-07
Seed eggNOG ortholog3659.XP_004145411.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs37SCF@33090,3GAWJ@35493,4JPX1@91835,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons1
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930374.3571332-CDS-H-paniculata_contig45995:435..7831622930374.3571332-CDS-H-paniculata_contig45995:435..783Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45995 436..783 +
1691481263.2444758-CDS-H-paniculata_contig45995:435..7831691481263.2444758-CDS-H-paniculata_contig45995:435..783Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45995 436..783 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45995.11501.1prot_H-paniculata_contig45995.11501.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45995 436..783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45995.11501.1

>prot_H-paniculata_contig45995.11501.1 ID=prot_H-paniculata_contig45995.11501.1|Name=mRNA_H-paniculata_contig45995.11501.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
WISDSGATGHATPSAAHISSYRQVKETLRIASGQVIPIVGRGNLTMTFRT
SDGNASLAVLNVAHAPELHYNLFSLRKVADAGHKYVGDGDRINVYLKTGG
VLAMSSNGGLSYLHGS
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mRNA from alignment at H-paniculata_contig45995:436..783+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45995.11501.1 ID=mRNA_H-paniculata_contig45995.11501.1|Name=mRNA_H-paniculata_contig45995.11501.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at H-paniculata_contig45995:436..783+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGATCAGTGATAGTGGGGCCACTGGTCATGCAACACCATCTGCGGCTCA
CATATCTAGCTATCGGCAAGTCAAGGAGACGCTGCGGATTGCGTCAGGGC
AGGTGATCCCGATTGTTGGTCGAGGAAACCTGACCATGACATTCAGAACG
AGTGATGGAAATGCGTCTCTCGCGGTTCTGAATGTCGCACATGCTCCCGA
ACTACACTACAATTTATTTTCGCTGAGGAAAGTGGCTGATGCCGGTCACA
AATATGTCGGGGATGGTGATAGAATTAATGTTTATCTGAAGACTGGAGGA
GTACTGGCCATGTCTTCGAATGGCGGTCTGAGTTATTTACATGGAAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig45995:436..783+

>mRNA_H-paniculata_contig45995.11501.1 ID=mRNA_H-paniculata_contig45995.11501.1|Name=mRNA_H-paniculata_contig45995.11501.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig45995:436..783+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGATCAGTGATAGTGGGGCCACTGGTCATGCAACACCATCTGCGGCTCA
CATATCTAGCTATCGGCAAGTCAAGGAGACGCTGCGGATTGCGTCAGGGC
AGGTGATCCCGATTGTTGGTCGAGGAAACCTGACCATGACATTCAGAACG
AGTGATGGAAATGCGTCTCTCGCGGTTCTGAATGTCGCACATGCTCCCGA
ACTACACTACAATTTATTTTCGCTGAGGAAAGTGGCTGATGCCGGTCACA
AATATGTCGGGGATGGTGATAGAATTAATGTTTATCTGAAGACTGGAGGA
GTACTGGCCATGTCTTCGAATGGCGGTCTGAGTTATTTACATGGAAGTTG
GATCAGTGATAGTGGGGCCACTGGTCATGCAACACCATCTGCGGCTCACA
TATCTAGCTATCGGCAAGTCAAGGAGACGCTGCGGATTGCGTCAGGGCAG
GTGATCCCGATTGTTGGTCGAGGAAACCTGACCATGACATTCAGAACGAG
TGATGGAAATGCGTCTCTCGCGGTTCTGAATGTCGCACATGCTCCCGAAC
TACACTACAATTTATTTTCGCTGAGGAAAGTGGCTGATGCCGGTCACAAA
TATGTCGGGGATGGTGATAGAATTAATGTTTATCTGAAGACTGGAGGAGT
ACTGGCCATGTCTTCGAATGGCGGTCTGAGTTATTTACATGGAAGT
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