mRNA_H-paniculata_contig4597.11499.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4597.11499.1
Unique NamemRNA_H-paniculata_contig4597.11499.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4597.11499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4597contigH-paniculata_contig4597:9750..10557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size229
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930374.0992045-CDS-H-paniculata_contig4597:9749..98881622930374.0992045-CDS-H-paniculata_contig4597:9749..9888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4597 9750..9888 -
1691481263.1860306-CDS-H-paniculata_contig4597:9749..98881691481263.1860306-CDS-H-paniculata_contig4597:9749..9888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4597 9750..9888 -
1622930374.1192484-CDS-H-paniculata_contig4597:10468..105571622930374.1192484-CDS-H-paniculata_contig4597:10468..10557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4597 10469..10557 -
1691481263.194216-CDS-H-paniculata_contig4597:10468..105571691481263.194216-CDS-H-paniculata_contig4597:10468..10557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4597 10469..10557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4597.11499.1prot_H-paniculata_contig4597.11499.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4597 9750..10557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4597.11499.1

>prot_H-paniculata_contig4597.11499.1 ID=prot_H-paniculata_contig4597.11499.1|Name=mRNA_H-paniculata_contig4597.11499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
LWPFKGGVGGDSPNRSRSGSTTLNQGIFGRRPRQHPTPHPPIPQPVCMKA
AATAATAAPKLGDGPGLEGLLNASDA
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mRNA from alignment at H-paniculata_contig4597:9750..10557-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4597.11499.1 ID=mRNA_H-paniculata_contig4597.11499.1|Name=mRNA_H-paniculata_contig4597.11499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=808bp|location=Sequence derived from alignment at H-paniculata_contig4597:9750..10557- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTATGGCCATTCAAGGGGGGCGTGGGTGGGGATTCTCCGAATCGATCGAG
GTCCGGGTCGACTACGTTGAACCAAGGGATTTTTGGGAGGTATGTAAAGT
GGGATTTAGTGGGATATCAGGTTAGTTGGTTTGGGGGGGGAGAGTAGAGT
TTTAGTATTATACAACATGTAACAGAGAGTATCACTGTATATCTCAAAAG
CGTATGTACTGTGTGTAGATTTCACATTGCCTAGAAGTCAGAACTTGAAA
CAAATAGTCACTTGACTGACGAACCCTTTTTCACAAATCCGTCAACGGAC
TTTTGTACTTGTGATACAAAATCGGTCATGAAAGAATGATGATGAGTGAG
GGCTTGAGGCCCAGCTGAAATCAAGGCTGCTTATGGACATTCCCTGTATC
AACAAACGTTGGGAGCAACAGGGGGAAGCGCAAGATCGTGAACGAGATCT
GCCACCTTTATTTTCCCGTACTAATGTCTGTGTGTACCTGGTGATGGTTC
TTGGTATTGAGCACCTCCAAGGCTCAATGGTATGTGTCTGCAAAGACTGT
AACGGATTCGTGGTGCGCACTGCCGTAAAGCACGAGCACACGAGAGTATT
ATTTTTTTTCAAAGAACACCCTGCCTCGCGCGCGTGTATCTGTATCGGCT
CGTACCGGACCGCCCCCAGGCGACCACGACAACATCCAACGCCGCACCCT
CCGATACCGCAGCCGGTATGCATGAAAGCGGCGGCGACGGCGGCGACGGC
GGCGCCAAAGCTTGGTGATGGACCCGGTTTGGAGGGCCTGTTGAACGCTA
GCGATGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig4597:9750..10557-

>mRNA_H-paniculata_contig4597.11499.1 ID=mRNA_H-paniculata_contig4597.11499.1|Name=mRNA_H-paniculata_contig4597.11499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig4597:9750..10557- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTATGGCCATTCAAGGGGGGCGTGGGTGGGGATTCTCCGAATCGATCGAG
GTCCGGGTCGACTACGTTGAACCAAGGGATTTTTGGGAGCTATGGCCATT
CAAGGGGGGCGTGGGTGGGGATTCTCCGAATCGATCGAGGTCCGGGTCGA
CTACGTTGAACCAAGGGATTTTTGGGAGGCGACCACGACAACATCCAACG
CCGCACCCTCCGATACCGCAGCCGGTATGCATGAAAGCGGCGGCGACGGC
GGCGACGGCGGCGCCAAAGCTTGGTGATGGACCCGGTTTGGAGGGCCTGT
TGAACGCTAGCGATGCGGCGACCACGACAACATCCAACGCCGCACCCTCC
GATACCGCAGCCGGTATGCATGAAAGCGGCGGCGACGGCGGCGACGGCGG
CGCCAAAGCTTGGTGATGGACCCGGTTTGGAGGGCCTGTTGAACGCTAGC
GATGCG
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