mRNA_H-paniculata_contig4592.11493.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4592.11493.1
Unique NamemRNA_H-paniculata_contig4592.11493.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4592.11493.1 vs. uniprot
Match: D8LJ00_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ00_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 1.010e-34
Identity = 63/97 (64.95%), Postives = 77/97 (79.38%), Query Frame = 1
Query:    1 QFVDEKIVNMLLAAYFAFIGAFALAATVDPVIVELFGIK-VGRHGFVANIRVLGEVDLTFTMSELASLMVGSVFAAVYTQTRHWALNNIFGITFCVQ 288
            ++VD KIVNMLL AYF FIG+FALAATVDPV+V++FG     RHG    + ++GEVDLTFT +EL S ++G  FAA Y +TRHWALNNIFG+TFCVQ
Sbjct:   82 KYVDAKIVNMLLLAYFTFIGSFALAATVDPVLVQIFGTTDAKRHGTKFELPLIGEVDLTFTATELVSFVIGVAFAAAYAKTRHWALNNIFGMTFCVQ 178          
BLAST of mRNA_H-paniculata_contig4592.11493.1 vs. uniprot
Match: A0A7S2V0H1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0H1_9STRA)

HSP 1 Score: 102 bits (254), Expect = 7.610e-24
Identity = 47/96 (48.96%), Postives = 70/96 (72.92%), Query Frame = 1
Query:    1 QFVDEKIVNMLLAAYFAFIGAFALAATVDPVIVELFGIKVGRHGFVANIRVLGEVDLTFTMSELASLMVGSVFAAVYTQTRHWALNNIFGITFCVQ 288
            +F+D+ +VN+LLA YF+ IG F + +TVDP+I +    +  ++G    +  LG +DLTFT SEL SL++G+ FA +Y +T+HWALNN+ GI+FCVQ
Sbjct:  102 KFLDKDLVNLLLAIYFSVIGMFTIGSTVDPIIHKFIKSE-KKYGTAFTLPYLGNIDLTFTPSELVSLILGTAFAGLYFKTKHWALNNLMGISFCVQ 196          
BLAST of mRNA_H-paniculata_contig4592.11493.1 vs. uniprot
Match: A0A835Z5W1_9STRA (Putative aspartyl protease family A22B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5W1_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 4.210e-19
Identity = 46/96 (47.92%), Postives = 63/96 (65.62%), Query Frame = 1
Query:    1 QFVDEKIVNMLLAAYFAFIGAFALAATVDPVIVELFGIKVGRHGFVANIRVLGEVDLTFTMSELASLMVGSVFAAVYTQTRHWALNNIFGITFCVQ 288
            + +D+ +VN++L+ YF+ +GA  LA T DP +V +       +G   N+  +GEVDLTFT S L SL  G  F AVY QT+HW +NNI GI+FCVQ
Sbjct:   98 KLLDKDMVNLVLSVYFSGMGALTLAGTFDP-LVHVVVKSETLYGRKFNLPWVGEVDLTFTPSGLVSLAFGLAFGAVYFQTKHWTMNNILGISFCVQ 192          
BLAST of mRNA_H-paniculata_contig4592.11493.1 vs. uniprot
Match: A0A482T1Q9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T1Q9_9ARCH)

HSP 1 Score: 84.0 bits (206), Expect = 4.690e-17
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 1
Query:    1 QFVDEKIVNMLLAAYFAFIGAFALAATVDPVIVELFGIKVGRHGFVANIRVLGEVDLTFTMSELASLMVGSVFAAVYTQTRHWALNNIFGITFCVQ 288
            ++ D+  VN+LL+ YF+ +G   L  ++    V  F     R GF     ++GEVD  FT +EL SLM+  +F+AVY +T+H+ +NNI GI+FC+Q
Sbjct:   91 KYFDKDTVNLLLSLYFSLVGVLTLTGSLSK-FVSQFLTNPARFGFKQKFPLIGEVDALFTFAELVSLMISIIFSAVYFKTKHFMMNNILGISFCIQ 185          
BLAST of mRNA_H-paniculata_contig4592.11493.1 vs. uniprot
Match: A0A7S3HLW3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLW3_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.350e-15
Identity = 34/96 (35.42%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    1 QFVDEKIVNMLLAAYFAFIGAFALAATVDPVIVELFGIKVGRHGFVANIRVLGEVDLTFTMSELASLMVGSVFAAVYTQTRHWALNNIFGITFCVQ 288
            ++ D+  VN++L+ YF+ +G FAL  +      +    K  ++GF     ++GE+D+  T +E+  L++ ++F+AVY +T+H+ +NNIFGI FC+Q
Sbjct:   42 KYCDKDTVNLVLSLYFSVVGVFALTGSFSSFASQYITSK-KQYGFKKTFPLVGEIDMLCTPAEIVCLIISTIFSAVYFKTKHYMMNNIFGICFCIQ 136          
BLAST of mRNA_H-paniculata_contig4592.11493.1 vs. uniprot
Match: A0A7S0SXT6_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXT6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.320e-14
Identity = 34/97 (35.05%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    1 QFVDEKIVNMLLAAYFAFIGAFALAATVDPVIVELFGI-KVGRHGFVANIRVLGEVDLTFTMSELASLMVGSVFAAVYTQTRHWALNNIFGITFCVQ 288
            ++ ++ IVN++L+ YF+ IG F L  T  P +       K  ++GF  ++   GE+D   T+ E+ S ++  +FA  Y +T+H+ LNN+ GI+FC+Q
Sbjct:   93 KYFNKDIVNLILSLYFSVIGVFTLTGTFAPFLSPYIPHDKTKKYGFKTSVVYFGEIDALLTIPEVISFILSIIFAVYYFRTKHYMLNNVLGISFCIQ 189          
BLAST of mRNA_H-paniculata_contig4592.11493.1 vs. uniprot
Match: W7T3L6_9STRA (Signal peptide peptidase family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T3L6_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.650e-13
Identity = 38/96 (39.58%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    1 QFVDEKIVNMLLAAYFAFIGAFALAATVDPVIVELFGIKVGRHGFVANIRVLGEVDLTFTMSELASLMVGSVFAAVYTQTRHWALNNIFGITFCVQ 288
            +F D+  VN LLA YF+ IGA  L  T +P    +            ++ +LG++DL FT +ELA+ +V    A  + Q++HW LNN FGI FC+Q
Sbjct:  218 KFFDKDWVNWLLAVYFSIIGAAMLTCTFEPPAAYVLRSSASYGVGPFSLPLLGKMDLRFTQAELAAGVVAVALAGCWFQSKHWMLNNGFGIAFCIQ 313          
BLAST of mRNA_H-paniculata_contig4592.11493.1 vs. uniprot
Match: A0A7S2MFE9_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MFE9_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.190e-12
Identity = 36/108 (33.33%), Postives = 63/108 (58.33%), Query Frame = 1
Query:    1 QFVDEKIVNMLLAAYFAFIGAFALAATVDPVIVELFGIKVGRHGFVANIRV--------LGEV--DLTFTMS--ELASLMVGSVFAAVYTQTRHWALNNIFGITFCVQ 288
            +F D+++VN++++ YF  +G  AL AT  P+  ++    +    F   I++         GE   D +F MS  ++ +L+  +VF+ VY +T+HW LNN+ GI+FC+Q
Sbjct:  110 KFFDKEVVNLIISGYFGLVGCAALTATTAPLFEKILPSAITSVRFTKEIKIKHPLPEFIAGESPWDFSFDMSLSDVLALIASAVFSGVYLKTKHWTLNNVLGISFCLQ 217          
BLAST of mRNA_H-paniculata_contig4592.11493.1 vs. uniprot
Match: A0A7S2LST7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LST7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.670e-12
Identity = 34/99 (34.34%), Postives = 56/99 (56.57%), Query Frame = 1
Query:    1 QFVDEKIVNMLLAAYFAFIGAFALAATVDPVIVEL---FGIKVGRHGFVANIRVLGEVDLTFTMSELASLMVGSVFAAVYTQTRHWALNNIFGITFCVQ 288
            +F D++ VN++++ YF+ +G  AL AT+ P +  +   F  K  R        + G+    F +S++ +LM G  F   Y QT+HW +NN+ GI FC+Q
Sbjct:  117 KFFDKETVNLIISVYFSLVGVAALTATLGPTLESVGPKFLAKEIRMKHFLPESIGGKSPWVFNVSDIFALMAGVAFNVAYFQTKHWTMNNVLGICFCLQ 215          
BLAST of mRNA_H-paniculata_contig4592.11493.1 vs. uniprot
Match: A0A7S1DA29_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DA29_CYCTE)

HSP 1 Score: 69.7 bits (169), Expect = 7.630e-12
Identity = 36/103 (34.95%), Postives = 60/103 (58.25%), Query Frame = 1
Query:    1 QFVDEKIVNMLLAAYFAFIGAFALAATVDPVIVEL-FGIKVGRH------GFVANIRVLGEVDLTFTMSELASLMVGSVFAAVYTQTRHWALNNIFGITFCVQ 288
            +F+D+++VN+L+  YF  +G  AL AT+ P++    F  K+ R        F+    ++ + DLTF  SE+   +  ++F  VY + +HW +NNI GI FC+Q
Sbjct:  112 KFLDKELVNLLIGFYFCMVGCIALYATISPLVPSWGFSWKMDRKITHPLPKFLMESPLVIQFDLTF--SEILVFLASAIFCGVYFRFKHWTMNNILGICFCLQ 212          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4592.11493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ00_ECTSI1.010e-3464.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V0H1_9STRA7.610e-2448.96Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z5W1_9STRA4.210e-1947.92Putative aspartyl protease family A22B n=1 Tax=Tri... [more]
A0A482T1Q9_9ARCH4.690e-1740.63Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3HLW3_9STRA3.350e-1535.42Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0SXT6_9STRA4.320e-1435.05Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
W7T3L6_9STRA3.650e-1339.58Signal peptide peptidase family protein n=2 Tax=Mo... [more]
A0A7S2MFE9_9STRA1.190e-1233.33Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2LST7_9STRA4.670e-1234.34Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S1DA29_CYCTE7.630e-1234.95Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4592contigH-paniculata_contig4592:5855..6785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue3.6e-23
Seed eggNOG ortholog2880.D8LJ00
KEGG koko:K09595
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.aspartic endopeptidase activity, intramembrane cleaving
EggNOG OGsKOG2443@1,KOG2443@2759
Ec32 ortholog descriptionPresenilin/signal peptide peptidase
Ec32 orthologEc-20_002160.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons2
Model size294
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4592.11493.1prot_H-paniculata_contig4592.11493.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4592 5855..6758 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930373.4992855-CDS-H-paniculata_contig4592:5854..60251622930373.4992855-CDS-H-paniculata_contig4592:5854..6025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4592 5855..6025 -
1691481262.9773145-CDS-H-paniculata_contig4592:5854..60251691481262.9773145-CDS-H-paniculata_contig4592:5854..6025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4592 5855..6025 -
1622930373.5145173-CDS-H-paniculata_contig4592:6662..67581622930373.5145173-CDS-H-paniculata_contig4592:6662..6758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4592 6663..6758 -
1691481262.9905427-CDS-H-paniculata_contig4592:6662..67581691481262.9905427-CDS-H-paniculata_contig4592:6662..6758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4592 6663..6758 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930373.5313613-UTR-H-paniculata_contig4592:6758..67851622930373.5313613-UTR-H-paniculata_contig4592:6758..6785Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4592 6759..6785 -
1691481263.0005872-UTR-H-paniculata_contig4592:6758..67851691481263.0005872-UTR-H-paniculata_contig4592:6758..6785Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4592 6759..6785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4592.11493.1

>prot_H-paniculata_contig4592.11493.1 ID=prot_H-paniculata_contig4592.11493.1|Name=mRNA_H-paniculata_contig4592.11493.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
MLLAAYFAFIGAFALAATVDPVIVELFGIKVGRHGFVANIRVLGEVDLTF
TMSELASLMVGSVFAAVYTQTRHWALNNIFGITFCVQVC
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mRNA from alignment at H-paniculata_contig4592:5855..6785-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4592.11493.1 ID=mRNA_H-paniculata_contig4592.11493.1|Name=mRNA_H-paniculata_contig4592.11493.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=931bp|location=Sequence derived from alignment at H-paniculata_contig4592:5855..6785- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTTTGTCGACGAGAAGATCGTGAACATGTTGCTTGCGGCATATTTTGC CTTTATCGGAGCTTTCGCGCTGGCGGCCACGGTGGATCCCGTGATCGTTG AACTGTTCGGCATCAAGGTAGGTGTCTGCTCCCGTTCCTACTCCAATAAT GATATTGCGCAATGGTGCCGAGAGGCACATGCCCTCCCCCCAAAGGGAGT TCTTGATTGTTTTGGTGTTGTTTGCAGGGTTATCGTAAATGTTTTTTTTC ACTATAACCGTTTTAGTCCGAAAAGGGACCGATTATAAAAGTTTCTGTCG TTTGACCTCCCCTCCCTCCCTCCCCCCCCAAAAAAAATGGTTCCTTAATT CCGTCTCCCTTCCGATAGCTTTCCAAGCTAAGCACAAGATTCCTCTGGCC TTAGTGGGGGGGGTATAATAAACACACTGTATGCGTGATCCCGTATTCCT GTACTCATGTTTGTGTGTCTTTTACCCTTTGTTTTCTTCTGTGACCAGTG TTGGGTGTTGATGTCTTCCTCTGGTATGGATTATGATTATGTTGGATGTA CATAAGTACTCCCTCCCCACTTTTTTTTTTTTTTTTTGCTGACGTGCTTT CACATCCTCCTGGATATGTTGCGTGCACGATCTGTGGACTCCCTTGCTTG TTCCGATGTTGGCCGTCATTCTTTCTTCGTCCATCTGTCTGTCTCCCTGT TTCCTGTCGATGGGTGTGCCGGCGGCAAACGCCGACACTCCATCCTGGCA GGATGCCAAGCGTCACGGCTTCGTGGCTAACATCCGCGTTCTGGGAGAGG TAGACCTCACCTTTACGATGTCGGAGCTGGCGAGCTTGATGGTGGGGTCG GTCTTCGCGGCTGTCTACACTCAGACTAGGCACTGGGCCCTCAACAACAT ATTTGGCATTACATTCTGTGTTCAGGTGTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig4592:5855..6785-

>mRNA_H-paniculata_contig4592.11493.1 ID=mRNA_H-paniculata_contig4592.11493.1|Name=mRNA_H-paniculata_contig4592.11493.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig4592:5855..6785- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGCTTGCGGCATATTTTGCCTTTATCGGAGCTTTCGCGCTGGCGGC
CACGGTGGATCCCGTGATCGTTGAACTGTTCGGCATCAAGGTAGGTATGT
TGCTTGCGGCATATTTTGCCTTTATCGGAGCTTTCGCGCTGGCGGCCACG
GTGGATCCCGTGATCGTTGAACTGTTCGGCATCAAGGTAGGTCGTCACGG
CTTCGTGGCTAACATCCGCGTTCTGGGAGAGGTAGACCTCACCTTTACGA
TGTCGGAGCTGGCGAGCTTGATGGTGGGGTCGGTCTTCGCGGCTGTCTAC
ACTCAGACTAGGCACTGGGCCCTCAACAACATATTTGGCATTACATTCTG
TGTTCAGGTGTGTCGTCACGGCTTCGTGGCTAACATCCGCGTTCTGGGAG
AGGTAGACCTCACCTTTACGATGTCGGAGCTGGCGAGCTTGATGGTGGGG
TCGGTCTTCGCGGCTGTCTACACTCAGACTAGGCACTGGGCCCTCAACAA
CATATTTGGCATTACATTCTGTGTTCAGGTGTGT
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