mRNA_H-paniculata_contig4590.11491.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4590.11491.1
Unique NamemRNA_H-paniculata_contig4590.11491.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4590.11491.1 vs. uniprot
Match: A0A6H5JFC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC6_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 5.180e-36
Identity = 64/79 (81.01%), Postives = 72/79 (91.14%), Query Frame = 1
Query:   10 LANRELRQVMVVFGKHLVRDQVTVEYASRIRRLVQGIKSGKLRPELVCFTGGRVRDNKVADASAGYIFFRHLCELQQVR 246
            L N ELRQV+VV GKHL+RDQVTVEYASRIRRLVQG+KSG+L+P+LVCFTGG VRDN+VADASAGYIFFRHLCE  + R
Sbjct:  375 LLNPELRQVLVVIGKHLIRDQVTVEYASRIRRLVQGLKSGRLQPDLVCFTGGTVRDNRVADASAGYIFFRHLCEQHEAR 453          
BLAST of mRNA_H-paniculata_contig4590.11491.1 vs. uniprot
Match: D7FW21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW21_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 6.690e-35
Identity = 63/78 (80.77%), Postives = 72/78 (92.31%), Query Frame = 1
Query:   10 LANRELRQVMVVFGKHLVRDQVTVEYASRIRRLVQGIKSGKLRPELVCFTGGRVRDNKVADASAGYIFFRHLCELQQV 243
            L N ELRQV+VV GKHL+RDQVTVEYASRIRRLVQG+KSG+L+P+LVCFTGG VRDN+VADASAGY+FFRHLCE  +V
Sbjct:  362 LLNPELRQVLVVIGKHLIRDQVTVEYASRIRRLVQGLKSGRLQPDLVCFTGGTVRDNRVADASAGYVFFRHLCEQHEV 439          
BLAST of mRNA_H-paniculata_contig4590.11491.1 vs. uniprot
Match: A0A7S4M5J4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M5J4_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 7.720e-19
Identity = 46/71 (64.79%), Postives = 51/71 (71.83%), Query Frame = 1
Query:   34 VMVVFGKHLVRDQVTVEYASRIRRLVQGIKSGKL-RPELVCFTGGRVRDNKVADASAGYIFFRHLCELQQV 243
            V VVFGK LVRDQ+TVEYASRIR L +  K   L RP LVCF GG    N V+DA AGYIFFRH+CE Q +
Sbjct:   85 VAVVFGKRLVRDQITVEYASRIRTLARLFKEEPLFRPSLVCFCGGVGPGNHVSDADAGYIFFRHMCEAQNI 155          
BLAST of mRNA_H-paniculata_contig4590.11491.1 vs. uniprot
Match: M1UUY3_CYAM1 (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1UUY3_CYAM1)

HSP 1 Score: 88.6 bits (218), Expect = 1.080e-18
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    1 SQALANRELRQVMVVFGKHLVRDQVTVEYASRIRRLVQGIKSGKLRPELVCFTGGRVR-DNKVADASAGYIFFRHLCE 231
            S  + N   R+V+V+FGK LVRDQ+T EYA RI  LV+ + +G+++P  VCFTGGR   D+ V++A AGY+FFRH+CE
Sbjct:  203 SVVVQNSPFREVVVIFGKRLVRDQITYEYAVRILTLVRHMVTGRIKPSAVCFTGGRDHPDSLVSEAVAGYLFFRHVCE 280          
BLAST of mRNA_H-paniculata_contig4590.11491.1 vs. uniprot
Match: A0A7J7IM92_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IM92_9RHOD)

HSP 1 Score: 86.3 bits (212), Expect = 6.960e-18
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 1
Query:   28 RQVMVVFGKHLVRDQVTVEYASRIRRLVQGIKSGKLRPELVCFTGGRVR-DNKVADASAGYIFFRHLCE 231
            R+V+V+FGK LVRDQ+T EYA RI  LV+ + +G+++P  VCFTGGR   D+ V++A AGY+FFRH+CE
Sbjct:  200 REVVVIFGKRLVRDQITYEYAVRILTLVRHMATGRIQPSAVCFTGGRDHEDSLVSEAVAGYLFFRHVCE 268          
BLAST of mRNA_H-paniculata_contig4590.11491.1 vs. uniprot
Match: B8C0Y5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0Y5_THAPS)

HSP 1 Score: 84.7 bits (208), Expect = 2.420e-17
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   16 NRELRQVMVVFGKHLVRDQVTVEYASRIRRLVQGIKSG-KLRPELVCFTGGRVRDNKVADASAGYIFFRHLCELQQV 243
            N     V +VFGK L+RDQVTVEYA+R+R L + +K     RP+L+CFTGG    N V+DA+AGY++FRHLC  Q +
Sbjct:  302 NSTTYHVAIVFGKPLIRDQVTVEYATRLRTLAKLLKEEPNFRPKLICFTGGVSEGNVVSDATAGYLYFRHLCVCQGI 378          
BLAST of mRNA_H-paniculata_contig4590.11491.1 vs. uniprot
Match: B7GC13_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GC13_PHATC)

HSP 1 Score: 84.3 bits (207), Expect = 3.210e-17
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 1
Query:   28 RQVMVVFGKHLVRDQVTVEYASRIRRLVQGIKSGKLRPELVCFTGGRVRDNKVADASAGYIFFRHLCELQQV 243
            RQV +V  K L +DQVTVEYA+RIRRL++ +      P+ +CF GG    NK+ADA AGYI+FR+LC  Q +
Sbjct:  194 RQVAIVLSKSLQKDQVTVEYANRIRRLLKAMLEEDYHPDAICFVGGTSTGNKIADADAGYIYFRYLCACQNI 265          
BLAST of mRNA_H-paniculata_contig4590.11491.1 vs. uniprot
Match: A0A6V2HMT6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2HMT6_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.900e-17
Identity = 44/79 (55.70%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   34 VMVVFGKHLVRDQVTVEYASRIRRLVQ---------GIKSGKLRPELVCFTGGRVRDNKVADASAGYIFFRHLCELQQV 243
            V++VFGK LVRDQVTVEYASRIR L +         G  +   RP LVCF G   + N V DA AGYIFFRH+CE Q +
Sbjct:  130 VVIVFGKKLVRDQVTVEYASRIRALAKLFKENVDDDGTATTPFRPSLVCFAGPVRKGNHVPDADAGYIFFRHMCESQSI 208          
BLAST of mRNA_H-paniculata_contig4590.11491.1 vs. uniprot
Match: A0A7S4VBZ0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VBZ0_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.460e-17
Identity = 44/79 (55.70%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   34 VMVVFGKHLVRDQVTVEYASRIRRLVQ---------GIKSGKLRPELVCFTGGRVRDNKVADASAGYIFFRHLCELQQV 243
            V++VFGK LVRDQVTVEYASRIR L +         G  +   RP LVCF G   + N V DA AGYIFFRH+CE Q +
Sbjct:   94 VVIVFGKKLVRDQVTVEYASRIRALAKLFKENVDDDGTATTPFRPSLVCFAGPVRKGNHVPDADAGYIFFRHMCESQSI 172          
BLAST of mRNA_H-paniculata_contig4590.11491.1 vs. uniprot
Match: A0A6V2HMV2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2HMV2_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.480e-17
Identity = 44/79 (55.70%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   34 VMVVFGKHLVRDQVTVEYASRIRRLVQ---------GIKSGKLRPELVCFTGGRVRDNKVADASAGYIFFRHLCELQQV 243
            V++VFGK LVRDQVTVEYASRIR L +         G  +   RP LVCF G   + N V DA AGYIFFRH+CE Q +
Sbjct:  130 VVIVFGKKLVRDQVTVEYASRIRALAKLFKENVDDDGTATTPFRPSLVCFAGPVRKGNHVPDADAGYIFFRHMCESQSI 208          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4590.11491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5JFC6_9PHAE5.180e-3681.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FW21_ECTSI6.690e-3580.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4M5J4_9STRA7.720e-1964.79Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
M1UUY3_CYAM11.080e-1853.85Uncharacterized protein n=2 Tax=cellular organisms... [more]
A0A7J7IM92_9RHOD6.960e-1857.97Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
B8C0Y5_THAPS2.420e-1753.25Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
B7GC13_PHATC3.210e-1752.78Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A6V2HMT6_9STRA3.900e-1755.70Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4VBZ0_9STRA4.460e-1755.70Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6V2HMV2_9STRA4.480e-1755.70Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4590contigH-paniculata_contig4590:14601..15437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.6
Seed ortholog evalue1.1e-29
Seed eggNOG ortholog2880.D7FW21
Hectar predicted targeting categoryother localisation
EggNOG OGs2CY8W@1,2S2UA@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930373.3983946-CDS-H-paniculata_contig4590:14600..146721622930373.3983946-CDS-H-paniculata_contig4590:14600..14672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4590 14601..14672 +
1691481262.9417596-CDS-H-paniculata_contig4590:14600..146721691481262.9417596-CDS-H-paniculata_contig4590:14600..14672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4590 14601..14672 +
1622930373.4154706-CDS-H-paniculata_contig4590:15263..154371622930373.4154706-CDS-H-paniculata_contig4590:15263..15437Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4590 15264..15437 +
1691481262.9592638-CDS-H-paniculata_contig4590:15263..154371691481262.9592638-CDS-H-paniculata_contig4590:15263..15437Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4590 15264..15437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4590.11491.1prot_H-paniculata_contig4590.11491.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4590 14601..15437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4590.11491.1

>prot_H-paniculata_contig4590.11491.1 ID=prot_H-paniculata_contig4590.11491.1|Name=mRNA_H-paniculata_contig4590.11491.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
SQALANRELRQVMVVFGKHLVRDQVTVEYASRIRRLVQGIKSGKLRPELV
CFTGGRVRDNKVADASAGYIFFRHLCELQQVR
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mRNA from alignment at H-paniculata_contig4590:14601..15437+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4590.11491.1 ID=mRNA_H-paniculata_contig4590.11491.1|Name=mRNA_H-paniculata_contig4590.11491.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=837bp|location=Sequence derived from alignment at H-paniculata_contig4590:14601..15437+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTCAGGCTCTGGCCAACCGTGAGCTTCGTCAAGTCATGGTTGTTTTCGG CAAGCATCTTGTCAGGGATCAGGTAACACGGTCAAACGAGGCTTTCAGCC GTTGCTAGCGAGGTACGACACGTTCATCGGCCGTCTAATTCGGCCTCCTC TGCCTGTACAGCGTTTTCGACAAGTTCCCCTCAACGAAAGCCACATCAAA TGAACGGAATCACACCGCGAAAATCAAATCAATGCCTCATTCGTACAGCG ATCAAGGCCAACTACTTCCGTTGTGTTGCTTCGACCGCCCATACCAATCT TTCATACACCCTGCTTCCTTTTCTTACCTGTCGTGTTCCACCTTGTCGCC ATGTATATTTGAACATTAGAGCACTGCCACTGTGTCAGCAAAGGTGTGCA TTTGTTCACATGTTGGTAGGCGAAACAAATAATGGACATAATTTTGGATT GAAGCAGAAGTCGCACCATCTAGCCGCACGCACGCATTATTTAAAGTTCC ATGAACTGCCAGCCTTAATGGACAGTTGACTGCAAGATAGGCAAGAGTAA ATCAAGCTGTGACCTTATTATTTCTGATTAATTTGGGAGATTGAACGCAT CCGTTTTGAGGGGACTACTTTTCCTCGCCATTCTTGGTATTGCGTTATAC TCCTCTCTGTCAGGTGACCGTGGAGTACGCCTCCCGCATCAGGCGGCTGG TGCAGGGGATCAAGTCCGGCAAGCTTCGTCCAGAGCTGGTGTGTTTTACG GGGGGTAGAGTGCGCGATAACAAGGTGGCTGACGCATCTGCCGGTTATAT ATTCTTCCGGCACCTCTGCGAGCTCCAGCAGGTGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4590:14601..15437+

>mRNA_H-paniculata_contig4590.11491.1 ID=mRNA_H-paniculata_contig4590.11491.1|Name=mRNA_H-paniculata_contig4590.11491.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig4590:14601..15437+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTCAGGCTCTGGCCAACCGTGAGCTTCGTCAAGTCATGGTTGTTTTCGG
CAAGCATCTTGTCAGGGATCAGAGTCAGGCTCTGGCCAACCGTGAGCTTC
GTCAAGTCATGGTTGTTTTCGGCAAGCATCTTGTCAGGGATCAGGTGACC
GTGGAGTACGCCTCCCGCATCAGGCGGCTGGTGCAGGGGATCAAGTCCGG
CAAGCTTCGTCCAGAGCTGGTGTGTTTTACGGGGGGTAGAGTGCGCGATA
ACAAGGTGGCTGACGCATCTGCCGGTTATATATTCTTCCGGCACCTCTGC
GAGCTCCAGCAGGTGAGGGTGACCGTGGAGTACGCCTCCCGCATCAGGCG
GCTGGTGCAGGGGATCAAGTCCGGCAAGCTTCGTCCAGAGCTGGTGTGTT
TTACGGGGGGTAGAGTGCGCGATAACAAGGTGGCTGACGCATCTGCCGGT
TATATATTCTTCCGGCACCTCTGCGAGCTCCAGCAGGTGAGG
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