mRNA_H-paniculata_contig4590.11491.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4590.11491.1 vs. uniprot
Match: A0A6H5JFC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC6_9PHAE) HSP 1 Score: 135 bits (340), Expect = 5.180e-36 Identity = 64/79 (81.01%), Postives = 72/79 (91.14%), Query Frame = 1
Query: 10 LANRELRQVMVVFGKHLVRDQVTVEYASRIRRLVQGIKSGKLRPELVCFTGGRVRDNKVADASAGYIFFRHLCELQQVR 246
L N ELRQV+VV GKHL+RDQVTVEYASRIRRLVQG+KSG+L+P+LVCFTGG VRDN+VADASAGYIFFRHLCE + R
Sbjct: 375 LLNPELRQVLVVIGKHLIRDQVTVEYASRIRRLVQGLKSGRLQPDLVCFTGGTVRDNRVADASAGYIFFRHLCEQHEAR 453
BLAST of mRNA_H-paniculata_contig4590.11491.1 vs. uniprot
Match: D7FW21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW21_ECTSI) HSP 1 Score: 134 bits (338), Expect = 6.690e-35 Identity = 63/78 (80.77%), Postives = 72/78 (92.31%), Query Frame = 1
Query: 10 LANRELRQVMVVFGKHLVRDQVTVEYASRIRRLVQGIKSGKLRPELVCFTGGRVRDNKVADASAGYIFFRHLCELQQV 243
L N ELRQV+VV GKHL+RDQVTVEYASRIRRLVQG+KSG+L+P+LVCFTGG VRDN+VADASAGY+FFRHLCE +V
Sbjct: 362 LLNPELRQVLVVIGKHLIRDQVTVEYASRIRRLVQGLKSGRLQPDLVCFTGGTVRDNRVADASAGYVFFRHLCEQHEV 439
BLAST of mRNA_H-paniculata_contig4590.11491.1 vs. uniprot
Match: A0A7S4M5J4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M5J4_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 7.720e-19 Identity = 46/71 (64.79%), Postives = 51/71 (71.83%), Query Frame = 1
Query: 34 VMVVFGKHLVRDQVTVEYASRIRRLVQGIKSGKL-RPELVCFTGGRVRDNKVADASAGYIFFRHLCELQQV 243
V VVFGK LVRDQ+TVEYASRIR L + K L RP LVCF GG N V+DA AGYIFFRH+CE Q +
Sbjct: 85 VAVVFGKRLVRDQITVEYASRIRTLARLFKEEPLFRPSLVCFCGGVGPGNHVSDADAGYIFFRHMCEAQNI 155
BLAST of mRNA_H-paniculata_contig4590.11491.1 vs. uniprot
Match: M1UUY3_CYAM1 (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1UUY3_CYAM1) HSP 1 Score: 88.6 bits (218), Expect = 1.080e-18 Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 1
Query: 1 SQALANRELRQVMVVFGKHLVRDQVTVEYASRIRRLVQGIKSGKLRPELVCFTGGRVR-DNKVADASAGYIFFRHLCE 231
S + N R+V+V+FGK LVRDQ+T EYA RI LV+ + +G+++P VCFTGGR D+ V++A AGY+FFRH+CE
Sbjct: 203 SVVVQNSPFREVVVIFGKRLVRDQITYEYAVRILTLVRHMVTGRIKPSAVCFTGGRDHPDSLVSEAVAGYLFFRHVCE 280
BLAST of mRNA_H-paniculata_contig4590.11491.1 vs. uniprot
Match: A0A7J7IM92_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IM92_9RHOD) HSP 1 Score: 86.3 bits (212), Expect = 6.960e-18 Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 1
Query: 28 RQVMVVFGKHLVRDQVTVEYASRIRRLVQGIKSGKLRPELVCFTGGRVR-DNKVADASAGYIFFRHLCE 231
R+V+V+FGK LVRDQ+T EYA RI LV+ + +G+++P VCFTGGR D+ V++A AGY+FFRH+CE
Sbjct: 200 REVVVIFGKRLVRDQITYEYAVRILTLVRHMATGRIQPSAVCFTGGRDHEDSLVSEAVAGYLFFRHVCE 268
BLAST of mRNA_H-paniculata_contig4590.11491.1 vs. uniprot
Match: B8C0Y5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0Y5_THAPS) HSP 1 Score: 84.7 bits (208), Expect = 2.420e-17 Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1
Query: 16 NRELRQVMVVFGKHLVRDQVTVEYASRIRRLVQGIKSG-KLRPELVCFTGGRVRDNKVADASAGYIFFRHLCELQQV 243
N V +VFGK L+RDQVTVEYA+R+R L + +K RP+L+CFTGG N V+DA+AGY++FRHLC Q +
Sbjct: 302 NSTTYHVAIVFGKPLIRDQVTVEYATRLRTLAKLLKEEPNFRPKLICFTGGVSEGNVVSDATAGYLYFRHLCVCQGI 378
BLAST of mRNA_H-paniculata_contig4590.11491.1 vs. uniprot
Match: B7GC13_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GC13_PHATC) HSP 1 Score: 84.3 bits (207), Expect = 3.210e-17 Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 1
Query: 28 RQVMVVFGKHLVRDQVTVEYASRIRRLVQGIKSGKLRPELVCFTGGRVRDNKVADASAGYIFFRHLCELQQV 243
RQV +V K L +DQVTVEYA+RIRRL++ + P+ +CF GG NK+ADA AGYI+FR+LC Q +
Sbjct: 194 RQVAIVLSKSLQKDQVTVEYANRIRRLLKAMLEEDYHPDAICFVGGTSTGNKIADADAGYIYFRYLCACQNI 265
BLAST of mRNA_H-paniculata_contig4590.11491.1 vs. uniprot
Match: A0A6V2HMT6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2HMT6_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 3.900e-17 Identity = 44/79 (55.70%), Postives = 51/79 (64.56%), Query Frame = 1
Query: 34 VMVVFGKHLVRDQVTVEYASRIRRLVQ---------GIKSGKLRPELVCFTGGRVRDNKVADASAGYIFFRHLCELQQV 243
V++VFGK LVRDQVTVEYASRIR L + G + RP LVCF G + N V DA AGYIFFRH+CE Q +
Sbjct: 130 VVIVFGKKLVRDQVTVEYASRIRALAKLFKENVDDDGTATTPFRPSLVCFAGPVRKGNHVPDADAGYIFFRHMCESQSI 208
BLAST of mRNA_H-paniculata_contig4590.11491.1 vs. uniprot
Match: A0A7S4VBZ0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VBZ0_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 4.460e-17 Identity = 44/79 (55.70%), Postives = 51/79 (64.56%), Query Frame = 1
Query: 34 VMVVFGKHLVRDQVTVEYASRIRRLVQ---------GIKSGKLRPELVCFTGGRVRDNKVADASAGYIFFRHLCELQQV 243
V++VFGK LVRDQVTVEYASRIR L + G + RP LVCF G + N V DA AGYIFFRH+CE Q +
Sbjct: 94 VVIVFGKKLVRDQVTVEYASRIRALAKLFKENVDDDGTATTPFRPSLVCFAGPVRKGNHVPDADAGYIFFRHMCESQSI 172
BLAST of mRNA_H-paniculata_contig4590.11491.1 vs. uniprot
Match: A0A6V2HMV2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2HMV2_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 4.480e-17 Identity = 44/79 (55.70%), Postives = 51/79 (64.56%), Query Frame = 1
Query: 34 VMVVFGKHLVRDQVTVEYASRIRRLVQ---------GIKSGKLRPELVCFTGGRVRDNKVADASAGYIFFRHLCELQQV 243
V++VFGK LVRDQVTVEYASRIR L + G + RP LVCF G + N V DA AGYIFFRH+CE Q +
Sbjct: 130 VVIVFGKKLVRDQVTVEYASRIRALAKLFKENVDDDGTATTPFRPSLVCFAGPVRKGNHVPDADAGYIFFRHMCESQSI 208 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4590.11491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4590.11491.1 >prot_H-paniculata_contig4590.11491.1 ID=prot_H-paniculata_contig4590.11491.1|Name=mRNA_H-paniculata_contig4590.11491.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp SQALANRELRQVMVVFGKHLVRDQVTVEYASRIRRLVQGIKSGKLRPELVback to top mRNA from alignment at H-paniculata_contig4590:14601..15437+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4590.11491.1 ID=mRNA_H-paniculata_contig4590.11491.1|Name=mRNA_H-paniculata_contig4590.11491.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=837bp|location=Sequence derived from alignment at H-paniculata_contig4590:14601..15437+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4590:14601..15437+ >mRNA_H-paniculata_contig4590.11491.1 ID=mRNA_H-paniculata_contig4590.11491.1|Name=mRNA_H-paniculata_contig4590.11491.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig4590:14601..15437+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |