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Homology
BLAST of mRNA_H-paniculata_contig459.11488.1 vs. uniprot
Match: D7G379_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G379_ECTSI) HSP 1 Score: 123 bits (309), Expect = 6.130e-26 Identity = 81/201 (40.30%), Postives = 103/201 (51.24%), Query Frame = 1
Query: 919 TRKGTPMFARVVRRAGDLSGILVNATLTPEGQKALLQVEGVGDLLGDLVDICIRATGSQQRRQQRTTNNVGIHPASSSRVGSPPPQRSKDGTSSPVPLLGPTPAPTPPTVVARTLLLYRNLALAPSTGQVAVHRDSLLNLIIRVLEHHXXXXXXXXXXXXXXXQRNNESEMDMTFSFAAASCLRAMVRGGSAEGGRKTAVG 1521
T+ GT F + RR GDL+G+LVN++L EGQKAL+QVEG D+LGDLV +C+RAT TT +V +V RTLLL RNLALAPSTGQ+A HR S+++LI+R E E ++T AA SCLRA++RG S +GG KTAVG
Sbjct: 2956 TKPGTASFTTLARRIGDLAGVLVNSSLRAEGQKALMQVEGACDMLGDLVAVCLRATSPTAATAATTTYSV---------------------------------------LVTRTLLLLRNLALAPSTGQIAAHRTSVVDLILR--------------------STGREGEGELTR--AAVSCLRAVLRGSSNDGGGKTAVG 3095
BLAST of mRNA_H-paniculata_contig459.11488.1 vs. uniprot
Match: A0A6H5JNL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNL0_9PHAE) HSP 1 Score: 116 bits (290), Expect = 1.420e-23 Identity = 75/200 (37.50%), Postives = 102/200 (51.00%), Query Frame = 1
Query: 922 RKGTPMFARVVRRAGDLSGILVNATLTPEGQKALLQVEGVGDLLGDLVDICIRATGSQQRRQQRTTNNVGIHPASSSRVGSPPPQRSKDGTSSPVPLLGPTPAPTPPTVVARTLLLYRNLALAPSTGQVAVHRDSLLNLIIRVLEHHXXXXXXXXXXXXXXXQRNNESEMDMTFSFAAASCLRAMVRGGSAEGGRKTAVG 1521
+ GT F + RR GDL+G+LVN++L EGQKAL+QVEG D++GDL+ +C+RA TT +V +V RTLLL RNLALAPSTGQ+ HR+S+++LI++ R+ E ++ AAASCLRA++RG S +GG KTAVG
Sbjct: 2009 KPGTASFTTLARRIGDLTGVLVNSSLRAEGQKALIQVEGACDMVGDLLSVCLRAASPAAATAATTTYSV---------------------------------------LVTRTLLLLRNLALAPSTGQITAHRESVVDLILQ------------------STGRDGEGKLTR----AAASCLRAVLRGSSNDGGGKTAVG 2147
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| Model size | 1522 |
| Cds size | 648 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig459.11488.1 >prot_H-paniculata_contig459.11488.1 ID=prot_H-paniculata_contig459.11488.1|Name=mRNA_H-paniculata_contig459.11488.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=216bp
MVAGMGDCRRAQAKCLELGLAQVLWKAWPLALASELSQTAWNHHRQQRYT QRRSRQSTGTNISTGGGAVGEYDTLSGEAGGTSGDGGGGGSLLLTAVLGL ACALAKGFPEGKKAFVFAGPEGPPHGSAVAGGESVAGEWPRSSRSLLHRV ASLALSASPTSWSDGASGSGPVYSLSASQAACDVVRSCCLAPECRVVLTQ SGFFADLVGQLRCAL* back to topmRNA from alignment at H-paniculata_contig459:23372..30588+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig459.11488.1 ID=mRNA_H-paniculata_contig459.11488.1|Name=mRNA_H-paniculata_contig459.11488.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7217bp|location=Sequence derived from alignment at H-paniculata_contig459:23372..30588+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CTCTATATAATACCAGTAATTAATCCTGCTTCTCAGTGAGCCAACGTGAT
CGACATGATGATGGTCACGAGATAGTTCGTCGCTAGCGTAGCCGCGGCCT
GCCTGCCAAAAAAACAACGTATTGCAATAATAAAAAAAGGAGTACGACCA
AAGCAACACAACAATGGCAGGTAGAAAAAGAGTCACCCGGGGAAATTCTG
GAGAGGGAGTTCTCCGCAGCGGCGGCGCTGATGGTCGCGGGGATGGGAGA
TTGTCGTCGGGCACAGGCGAAATGCCTGGAGTTGGGGCTTGCCCAGGTGC
TCTGGAAGGTGCGTGAAGCTAAAGTACTTCTATAGTAGAAGCACACACTC
AGGTACAGTGGTCCCACTGGTGAGAATCGTGAACGCACATGTGTGGATCG
TTTTGGATGGCTGTGCGGATACGCTTTTGAAGGAATACTGGAGTATGTAC
GGATCGTGTACACTGAAGTGCGCCTAGAACGCCCTGCAGTACTATCAAAT
GAGTCCAAACATATTGAACCAGGCGAGCCCGAAGCCCAAGTATTACTCTG
CTGCGGGTCCAAGCAATCGGTCTGACGTGTTGATCGAAAAACAAACGGGT
GCGTTTTTGTACAGGCACCTAGTTTGTATGGTGGCAAGCCCCAATGTTTG
TATCTGTTTCATAACCTAGTGCACGTCAGTTGAATCTCTGGAGTATTTTC
CACTCGTAATTGTTTCCTGAAACATTCCAAGTGTTATTTTGTGGTTACGG
CGATTAGTTTTCAGTTGTTTACCACCCACGATCGGTAGGTACATGAGATT
AAGACGGGTGTTGTGTTGGCACCATAGGATGTAACTTGAAGATGCCAATC
AAGAACCTTGAAGGGATGACGAGACAGTGAGCTGAGACAGTCGGAATATC
GGCAAACCAATCATGTATACTTTGCTTGACGATTACCACTATCTTTTGTA
TTATAAGGTAAGATTGATGTGATGGTCATTTCGGAATAGACTTCACCCCT
ACACTCTCGTGACTTCTAAACGAACCTCCGTGAGTGCGAAACATTTTCAG
CAGGAGTACACTGATTCGGGTGGTTTCCCTCTTGTGGAGGATAATAATCA
GTATGCAGTTGGAGAGCAAAGCAACTATCAAAATATCTACCCATATGTGT
TCAGCAGTGTGGGCGTTGAGTTTGTATTTTGCTTTTGTCAGTTTGAAATT
ATTGTCGAATTGGCGGAGAAGTTTGCGACATGGTGAAAACAAAAGGAGGC
ATTTGAGTACCATTGTACTGACTGCAGTTGCAGAGACATTAATGATCGCG
AAACAGATGGTAGTGATGGCAAAACTACTGAGGGTGTGCAATCAGTAGCC
TTGCCAAGGAATGTCCCGGTGCTTCTCACTGCAGGCTTGGCCGCTGGCCT
TGGCCTCCGAGTTATCCCAAACAGCTTGGAACCATCATCGTCAACAACGT
TACACACAGCGCCGGTCCCGACAAAGCACTGGTACTAATATAAGTACTGG
GGGTGGTGCGGTAGGGGAGTATGACACGCTCTCTGGCGAGGCAGGTGGCA
CGAGCGGAGATGGTGGTGGCGGGGGGTCGTTGCTGCTGACGGCTGTGCTC
GGCCTGGCTTGCGCGCTCGCAAAAGGGTTTCCAGAGGGCAAGAAGGCGTT
TGTCTTTGCGGGGCCAGAGGGTAAGTTGGCTTGGGTTTTTTGTGCTTCTA
TTTTGCTACGTTTTCGGGGTGTTGTGGTATATAGCGTACTAGTTTTTGTC
CTCGAACTTGGGGTATTTCGTTTGCGTTGGGCAGTTTTTTCCCGTCGTTT
TTTTCGGGTGTTCTCTCAGCAGGGCTTCCAAAGGGTAAAACTGAGCGAGC
TTTTCGTCGTCATCGATACTACACTATGGAGCACGCATTTCAGTCAGCAG
GTGGCCCTATTTAAGTTGCCGCAATGCCGAGCCAACATAGGATACCTACC
GCAATAGTGGGGTCGCCTCGCTGAAACACGGTTCTTTATCCTAACCTCGT
CGCTCCGAAATAGTGTAGACACATGTCTTTTGCTGTGCCTTATATACATC
TCAGTACATCATGCTTCGTGGCTACCCCAGATAAGGCTGTATCCACTGTA
TCGTACCGCATTTTTGTAGTGACCGGCGTCAAATATTTGCAGGCCTTCAA
TAAGAATTTGACTCCTCGCGCATTGGCTTCACGGACAACCGCAAGCCGAT
TCAAACGAGGTTGGTTCACTTGCAGCGATGATAGGTCTTGCTGTACACAA
CTGTTTTCTCCGCCACCTGTATCCTCACACAATACAGAACTATCGCAGTA
TCCAATTCCAAGACATTCAGTATTCGCAAATCAGTAAAGTCACGACCCGT
CCACCCTCGTCACATTTCTCACCGGTTATTTACCTGTTCGTAATCGTGGT
TGCCACGTCTCCATCAATGGGAAGAAGACAGCGATGTATAACTGTTGAAA
GAGTAACGACAATAGACGTCACGAAAAGGTATGAATAGATTGCGAGAATC
AATATGCATCGTCACGAAAACTTCTCCCAAACGATCACTCTTCCCCCTCA
CCGCAAAAAGCACTGTAATCAGTACATTCGGCCAAAATGATTCAATGCCC
ATTATTGGCACGGACCTACGCCCGAACGGGTAGGCTAGCTCGTGAACTGA
GCATGACTGGAAGTCTAGTCAGAGGTCATTTAGTGGGTGCAACCCCCATA
CTGCCTACCTGGTTTAGCCAAACGGGGGTGGCGCCTACCCCGTAGAGGAA
CAAATAACTCTAATTTGTAAAAGGAAATGTAGACGTACTTCGGTGTGGAA
GCATCGGATAGAGGTTATTGCCTTAGCCTTCCGGGGGTTAAAAATGTCCA
TTATTGGGACTGGCCGAAAACGTTTCGCTCCTTCCTTGTAGGACCGCCGC
ACGGGTCCGCGGTTGCTGGGGGGGAATCGGTTGCGGGCGAATGGCCGAGG
TCATCTCGATCGTTGCTTCATCGTGTCGCATCTCTCGCACTGTCAGCATC
GCCCACAAGCTGGTCGGACGGTGCCTCTGGTTCTGGTGGGTTCCTTAGCG
CATGGCCGCGATTTCTGGTTTAGGTTTAGTATCAAGGTTAAATATATACA
TGTATATATGTTTGATGTTTTTTCTTTCTTTTGTTTGTTGTTGTTGCTGC
TGCTTTGGTTATGTTCTCTTTCTGATTTCGAGGTTCCTTCCCCTGTACTA
CATGTTTCCGCTCCCCCTGCACAGACGGACAAGTTTTTATGTCCCTATAC
CGTCTATACTATACTAGCGTTAGTTAAGTCCCACCCGTGGCTTATACGCG
CACGTATCCGCCACTTTCGAATTCGTTCAAATCATTGGTGCCGACTATAG
ATATCGCCCCCCCCCCCCCCCTCCCCTCCCCTCTTCACAGGACCAGTGTA
CAGCTTATCGGCATCACAGGCTGCGTGTGACGTCGTGAGGAGTTGTTGCC
TCGCGCCCGAGTGCCGGGTGGTGCTGACCCAGTCGGGTTTCTTTGCCGAC
CTGGTAGGGCAACTAAGGTGCGCGCTTTAATTGCCGTGGTCATGTTCCGT
TTACTCTCGCCATGTTTTTCGTTCTTTGGTCGTCCTGCAGATGCCATGAG
GCCATTAGATACCAGCTTTAGGGATAATTCTGTATGATGATCGCAGAGTA
AACCGTTATACCACACTGCACTGATGTAAGAGGGCGGCGCGGGGTATGCA
GCATATGTGTGTTTCTTCTATCATGTTTTTGTTTGTTATTTACTATTTCT
GCTTTTAGTACGAATTTCCATTCCAAGACATGTTTTTACTTGCTGCCAGG
GGGGTCGTCGGTGGTTGATCGGTTTTCATGTAAGGTTTTGCCTGTTTGGG
TTTGAGTGATCGATTGATGTGGCTTGGAGAGACAGCAAATGGATTTTGCG
GCGTTGAATACTACTATCTCGAGAATCCCTTCCTCCTTCTTTGCTTCGTT
TGTGGATAAGTAATCCAGCAGTTTGCAGATGCTGAATACACACCTCCTTT
TTGTTTTATGGCCGGCGTCATGTTTCTAGTTTGATCTCTTGCTAGATGTT
GACTCATTTTTTAGTCGTTCTTCACTCCATCATTTCCTCTACCCCCGTCC
TCCACACGCACATATACCCGCGCACTCTCTCTCTAGTCAGGGGTTGATTT
ACCGTAGTTGGACCGTCGTTTACGGAGTATATTAACAGTCCCGATGGAGT
GAGAATATTTTCTTACACGATTATCTCGATACCTACGGTGTTAGTTAGTG
ATATCGACCCTTGTGTCTCGTCTCTCCAAGTTGGAAAGATCCTGTCCATA
CAGTTGATCGGTGTGCTCTTTCGGGTTTACATAGCCTTTGTTTTCGAGAT
ATTTGAGGTCGACATAAGAGCCAACCGCCCGGGGATGTCATACACTGGTA
TAAACTCGGGTGGGGCCTCGTGTCTCGTCGTCGTCGAGGGAAACGGTCGA
GGATATTTCAACGTGTGTAAGGTTATGTTTGGCGATTCAGCACGATTTTC
CCGTATTTTGCCCGAATCTTCCGTCGATTAAAATGAATCGCTTGCCCGCA
ACTAGACCCAATGCCGAATGGCTTCAAAACCCTGGCACTGTCGTAATTCC
CAATATTGCTGTCTTGAACAGGCAGCTGTACTTGACGTGGGGCACGCGAA
AGGGGACGCCGATGTTTGCGAGGGTGGTGCGGAGGGCGGGTGACTTGTCT
GGCATCCTGGTTAATGCTACTCTCACGCCAGAAGGGCAAAAAGCCTTGCT
TCAGGTACGCATTGAAAGGTACTGTACTGTGCTGTACCGGATCTCACCGG
ATGGCACCGTACAGCGCTATACCTTATTTCAAAGCACGTGTATTGTCGCT
ACTCAGTCATAACTCGTTAAGTGGTATATATATATATATATATATATATA
TATATATATATATATACTTTAGAAGTATAATAATTTCAATTCAACACCGT
CCCACATACAGGGGGGTATTACAGTACGTATACTAAGGATGATGCTAATA
TTTACGCTATTCAGCTTAGGGGTTCAGCAAGGTACTGCGTTTGAATAATT
CATCGACCTCCAGCCGATAAGAGAACCTTCATTGCCTGGGAATCATTGTA
CCGTATGGTTTACATGATACCTACTGTACATGGTGCTTTTCATGGCACGA
TCCAACATTTCAAGGGTCTCCTCTCGGTGAACGGCTGTGGCTCTACCAGA
TGTATAAATTAGTATGATCTGTTTTCAATACACGGAGAACTACCAATTGT
CTTCTAATATCTTCATTTACGAAGAAATGACACAGTGTAAGTCTGCTTGT
TTATAAGAGATCAAGGAGATACGCCGAGTGGTAGTAGAGGGTAGTGTAAT
GCTAATGATTCTATCTTGGGTTTCCTTCGCCATATTGCCGCTATGGTGTA
GAATACGCCGACGTGGTCGTTATCGTTTCGAAGCACTTCCGAAGCACTTC
TTCAAGCTTATACTCGCATACATTACAAGATCAAATCTTCGTGGAATTCG
TTCCTGCTTTCCGTGCGAGCATAGCGAGACGTTGCGCATAGATCGGGAGT
GAAAAAACACGGATTACACAGGCGGAACTGTAGAATTAAACTGTTGTAAA
TCGTGCAAATCACGTCGAGGCTATACCATGGATCTTGAGGTTTTCATTGC
ATTTTCAATCCCTGCAGTCTTTCGTGTGTCGTTGGGCGGCTGCGGCGGTG
TCGGCGGCGTTTGGGGGGGTCGCAAACAAAAGCAGGTGGAAGGCGTCGGT
GATTTGCTCGGGGACCTGGTGGATATATGCATTCGCGCAACAGGGAGTCA
ACAGCGGCGACAGCAGCGCACCACGAACAATGTGGGCATTCATCCTGCAT
CTTCATCAAGGGTAGGTTCACCCCCGCCCCAGCGGAGCAAGGATGGGACA
TCTTCACCCGTGCCCCTCCTGGGGCCGACTCCTGCACCTACGCCTCCGAC
CGTGGTCGCCCGAACGCTGCTGCTATATCGGAATTTGGCGCTGGCTCCAA
GCACCGGACAGGTCAGTCTAATGTTTGCGTTTTATGTCGATTTGTTCAGT
TCGATCTCTGTGTATTACTTCCTCGGGGTCCGTTTTAGTGTTCGTCCAGT
ATTCGTGAATAGCTGAGAGGGTCGAATATCAACTGAGCCTCTAGTGTATG
CATGGATTGTTCTGGTGAATTGCTCTCCCATTGTGTGCGATCGTTTCTTC
TCGGGCTATTCCTACGATATATATGCGACGTATCTATTGACTGGCCTGAT
TGCCGGACGAATCCATCTTGGTCAGTATTGCTTTGCAGATTGGGGTCAGG
TTGGAACCGCTGCCCCTTGCTCCACCGGCGCACCGCGGTTCAACATCACA
ATGTATTAGTGCCGGTGCTTCGAAGCACAGAGGAGTTGAGCGCTCGAGGA
ACAGGTTGCTTGCGACGATTAGCCTAATCGGCGCGTATTCATACGTCCCG
CATGACGTTAAAACAAATACACCATTCATTGGGTAGATCGGTTTTTCTGT
CAGAGTTCACAGATTACAGTAAATACCACTTCTTCTGCATTCATGTTTGA
GTGGTACGCTGTCTAACGGTCCCATTCCTCACTAAGCTTGTTCTTGAACC
GAGAATGAACACGAACTATCAGTTGATTACTGTGACGAGGTATACCCAGC
GCGATCAACCAAGTTACACCTGTATAAAATTCCTGGTATTACGCAGTTAG
GCTACTCTTACTTACTTTGTTTTTGTCCTCGTACCTACGTAGTCAAACCC
ATGCCATGACCAACGCACGACCGCTCGCTGAGCTCGCTTCTAGTCTCTAT
GCCCATGTGCTCACGTGTAGGCACAATATCCATGAAGACTCTTTTTTGGA
ACTTTGTTTGAGTATAGATTTGAAGAGCTCTTGCGGGACGACCACCATGG
CCAATATGGTCGTTGTATTCAGCGCTAGGGACTGACGCAAAGCTCCCTTT
GTTATCCCCTCCTCCCCTCCGCACACATGCCTCGTCCACTCTTGTCAAAG
GTTGCCGTTCACAGAGACTCCCTCCTGAATCTAATCATTCGGGTGCTGGA
ACACCATCACCACCAACGACAACAGCAACAACGAAAACGACAACAAAACT
ATCAGCGCAACAATGAAAGCGAGATGGACATGACTTTTTCTTTTGCGGCC
GCTTCCTGCCTGAGGGCAATGGTGCGCGGCGGCTCTGCGGAGGGGGGGCG
AAAGACTGCAGTGGGAA back to topCoding sequence (CDS) from alignment at H-paniculata_contig459:23372..30588+ >mRNA_H-paniculata_contig459.11488.1 ID=mRNA_H-paniculata_contig459.11488.1|Name=mRNA_H-paniculata_contig459.11488.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1296bp|location=Sequence derived from alignment at H-paniculata_contig459:23372..30588+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGTCGCGGGGATGGGAGATTGTCGTCGGGCACAGGCGAAATGCCTGGA GTTGGGGCTTGCCCAGGTGCTCTGGAAGATGGTCGCGGGGATGGGAGATT GTCGTCGGGCACAGGCGAAATGCCTGGAGTTGGGGCTTGCCCAGGTGCTC TGGAAGGCTTGGCCGCTGGCCTTGGCCTCCGAGTTATCCCAAACAGCTTG GAACCATCATCGTCAACAACGTTACACACAGCGCCGGTCCCGACAAAGCA CTGGTACTAATATAAGTACTGGGGGTGGTGCGGTAGGGGAGTATGACACG CTCTCTGGCGAGGCAGGTGGCACGAGCGGAGATGGTGGTGGCGGGGGGTC GTTGCTGCTGACGGCTGTGCTCGGCCTGGCTTGCGCGCTCGCAAAAGGGT TTCCAGAGGGCAAGAAGGCGTTTGTCTTTGCGGGGCCAGAGGGCTTGGCC GCTGGCCTTGGCCTCCGAGTTATCCCAAACAGCTTGGAACCATCATCGTC AACAACGTTACACACAGCGCCGGTCCCGACAAAGCACTGGTACTAATATA AGTACTGGGGGTGGTGCGGTAGGGGAGTATGACACGCTCTCTGGCGAGGC AGGTGGCACGAGCGGAGATGGTGGTGGCGGGGGGTCGTTGCTGCTGACGG CTGTGCTCGGCCTGGCTTGCGCGCTCGCAAAAGGGTTTCCAGAGGGCAAG AAGGCGTTTGTCTTTGCGGGGCCAGAGGGACCGCCGCACGGGTCCGCGGT TGCTGGGGGGGAATCGGTTGCGGGCGAATGGCCGAGGTCATCTCGATCGT TGCTTCATCGTGTCGCATCTCTCGCACTGTCAGCATCGCCCACAAGCTGG TCGGACGGTGCCTCTGGTTCTGGACCGCCGCACGGGTCCGCGGTTGCTGG GGGGGAATCGGTTGCGGGCGAATGGCCGAGGTCATCTCGATCGTTGCTTC ATCGTGTCGCATCTCTCGCACTGTCAGCATCGCCCACAAGCTGGTCGGAC GGTGCCTCTGGTTCTGGACCAGTGTACAGCTTATCGGCATCACAGGCTGC GTGTGACGTCGTGAGGAGTTGTTGCCTCGCGCCCGAGTGCCGGGTGGTGC TGACCCAGTCGGGTTTCTTTGCCGACCTGGTAGGGCAACTAAGGTGCGCG CTTTAAGACCAGTGTACAGCTTATCGGCATCACAGGCTGCGTGTGACGTC GTGAGGAGTTGTTGCCTCGCGCCCGAGTGCCGGGTGGTGCTGACCCAGTC GGGTTTCTTTGCCGACCTGGTAGGGCAACTAAGGTGCGCGCTTTAA back to top
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