mRNA_H-paniculata_contig4580.11474.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4580.11474.1
Unique NamemRNA_H-paniculata_contig4580.11474.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4580.11474.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.030e-23
Identity = 62/158 (39.24%), Postives = 96/158 (60.76%), Query Frame = 1 
Query:    1 EIYSIVKPVTEIMVNAQATNLPTGPDIVLQLCALKVTALNPDAPLEIRIPEQVVA-PGATDSAQALAPVTSVMRSHEDLTSAAKETRLLLRRSISWRWYDKRYGTQDTQDT-DYVFEMQLVMHPATARLSHVDVLCDDKNRAAEIKKTIFDRVVKLAV 468
            E+YS++KPV E++V  Q T++PTG   VL L  LK++  N DA L++  P +    P  T   +  A  TSV R H  LT   ++ R  L  ++  R++D+ Y + D++ T D+VF+MQ+ +HP TA L +VD L   +  AA +KK+I D+++ LAV
Sbjct:  291 ELYSLIKPVAELIVTCQQTHVPTGQAAVLGLATLKLSTFNVDARLDVLTPVRAQGWPEGTGGGERKA--TSVPRLHNHLTQVGRDAREHLASALDRRYFDRCYKSADSEKTTDFVFDMQMGLHPTTADLQYVDKLTSTEVHAAFVKKSITDKIIALAV 446
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BLAST of mRNA_H-paniculata_contig4580.11474.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.890e-19
Identity = 51/114 (44.74%), Postives = 68/114 (59.65%), Query Frame = 1 
Query:    1 EIYSIVKPVTEIMVNAQATNLPTGPDIVLQLCALKVTALNPDAPLEIRIPEQVVAPGATDS-AQALAPVTSVMRSHEDLTSAAKETRLLLRRSISWRWYDKRYGTQDTQDTDYV 339
            E+YSI+KP  +++V  Q T++PTG   VL L ALK+  LN D+PLEI  P + +A   T        P TS  R H   T  AK TR  +  S+ W W+DKRY + ++QDTDYV
Sbjct:  378 ELYSIIKPAAQVIVKCQQTSVPTGQVAVLALAALKLITLNVDSPLEILTPARKLAQAETSGIGGGERPATSTPREHSLSTGVAKGTRQHICESVDWWWFDKRYKSAESQDTDYV 491
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BLAST of mRNA_H-paniculata_contig4580.11474.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 3.200e-19
Identity = 46/104 (44.23%), Postives = 61/104 (58.65%), Query Frame = 1 
Query:  157 VVAPGATDSAQALAPVTSVMRSHEDLTSAAKETRLLLRRSISWRWYDKRYGTQDTQDTDYVFEMQLVMHPATARLSHVDVLCDDKNRAAEIKKTIFDRVVKLAV 468
            ++ P A        P TS  R H  LT  A+ TR  +  S+ WRW+DKRY +  +QDTDYVF+MQ+ +HP TA L +VD L      A  +K TI D+V+ LAV
Sbjct:  203 IIKPAAQVIVSGERPATSTPREHSLLTGVARGTRQHMCESVDWRWFDKRYKSAKSQDTDYVFDMQMALHPTTADLRYVDKLASTSAFAGAVKSTITDKVISLAV 306
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BLAST of mRNA_H-paniculata_contig4580.11474.1 vs. uniprot
Match: A0A6H5KEK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK6_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 7.280e-16
Identity = 56/157 (35.67%), Postives = 82/157 (52.23%), Query Frame = 1 
Query:    1 EIYSIVKPVTEIMVNAQATNLPTGPDIVLQLCALKVTALNPDAPLEIRIPEQVVAPGATDSAQALAP-VTSVMRSHEDLTSAAKETRLLLRRSISWRWYDKRYGTQDTQDTDYVFEMQLVMHPATARLSHVDVLCDDKNRAAEIKKTIFDRVVKLAV 468
            E+YS++KPV E++V  Q T++PTG    L L ALK++  N DA L++  P +  A G  + A  + P  TSV R ++   SA                          + TD+VF+MQ+ +HP TA L +VD L   K  AA + K I D+++ LAV
Sbjct:  117 ELYSVIKPVAELIVTYQQTHVPTGQAAALGLAALKLSTFNVDARLDVLTPAR--AQGRPEGAGGVEPKATSVPRCYKPADSA--------------------------KTTDFVFDMQMGLHPTTADLQYVDKLASSKVHAAFVTKRITDKIITLAV 245
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BLAST of mRNA_H-paniculata_contig4580.11474.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 7.990e-12
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:  274 SISWRWYDKRYGTQDTQDTDYVFEMQLVMHPATARLSHVDVLCDDKNRAAEIKKTIFDRVVKLAV 468
            S+ WR +DKRY + ++QDTDYVF+MQ+ +HP TA L +V+ L      A  +K TI D+V+ L V
Sbjct:    4 SVDWRRFDKRYKSAESQDTDYVFDMQMALHPTTAGLRYVEKLASTSAFAGAVKSTITDKVIFLTV 68
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4580.11474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LBK4_ECTSI1.030e-2339.24Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE2.890e-1944.74Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE3.200e-1944.23Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KEK6_9PHAE7.280e-1635.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JML0_9PHAE7.990e-1247.69Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4580contigH-paniculata_contig4580:4196..4663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size468
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930370.9040558-CDS-H-paniculata_contig4580:4195..46631622930370.9040558-CDS-H-paniculata_contig4580:4195..4663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4580 4196..4663 +
1691481261.7191348-CDS-H-paniculata_contig4580:4195..46631691481261.7191348-CDS-H-paniculata_contig4580:4195..4663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4580 4196..4663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4580.11474.1prot_H-paniculata_contig4580.11474.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4580 4196..4663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4580.11474.1

>prot_H-paniculata_contig4580.11474.1 ID=prot_H-paniculata_contig4580.11474.1|Name=mRNA_H-paniculata_contig4580.11474.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
EIYSIVKPVTEIMVNAQATNLPTGPDIVLQLCALKVTALNPDAPLEIRIP
EQVVAPGATDSAQALAPVTSVMRSHEDLTSAAKETRLLLRRSISWRWYDK
RYGTQDTQDTDYVFEMQLVMHPATARLSHVDVLCDDKNRAAEIKKTIFDR
VVKLAV
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mRNA from alignment at H-paniculata_contig4580:4196..4663+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4580.11474.1 ID=mRNA_H-paniculata_contig4580.11474.1|Name=mRNA_H-paniculata_contig4580.11474.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=468bp|location=Sequence derived from alignment at H-paniculata_contig4580:4196..4663+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGATTTACTCCATCGTAAAACCGGTGACCGAGATCATGGTCAACGCTCA
GGCCACTAACCTACCCACCGGACCGGACATAGTGTTGCAGCTTTGCGCAC
TGAAGGTCACAGCTCTTAACCCCGATGCCCCACTAGAAATTCGGATTCCT
GAGCAAGTTGTCGCCCCGGGGGCGACCGATTCCGCACAAGCATTAGCACC
CGTTACGTCAGTCATGAGGTCCCATGAGGACCTGACGAGCGCGGCGAAGG
AAACCCGTCTGCTTCTTCGTCGCTCTATCTCCTGGCGGTGGTACGACAAG
CGATACGGGACTCAAGATACCCAAGATACAGACTACGTGTTTGAGATGCA
GCTGGTGATGCACCCTGCCACGGCTCGTCTGTCGCACGTGGACGTGCTCT
GCGACGACAAGAACCGTGCAGCGGAGATCAAGAAAACGATTTTCGACCGT
GTGGTCAAGCTAGCCGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4580:4196..4663+

>mRNA_H-paniculata_contig4580.11474.1 ID=mRNA_H-paniculata_contig4580.11474.1|Name=mRNA_H-paniculata_contig4580.11474.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig4580:4196..4663+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGATTTACTCCATCGTAAAACCGGTGACCGAGATCATGGTCAACGCTCA
GGCCACTAACCTACCCACCGGACCGGACATAGTGTTGCAGCTTTGCGCAC
TGAAGGTCACAGCTCTTAACCCCGATGCCCCACTAGAAATTCGGATTCCT
GAGCAAGTTGTCGCCCCGGGGGCGACCGATTCCGCACAAGCATTAGCACC
CGTTACGTCAGTCATGAGGTCCCATGAGGACCTGACGAGCGCGGCGAAGG
AAACCCGTCTGCTTCTTCGTCGCTCTATCTCCTGGCGGTGGTACGACAAG
CGATACGGGACTCAAGATACCCAAGATACAGACTACGTGTTTGAGATGCA
GCTGGTGATGCACCCTGCCACGGCTCGTCTGTCGCACGTGGACGTGCTCT
GCGACGACAAGAACCGTGCAGCGGAGATCAAGAAAACGATTTTCGACCGT
GTGGTCAAGCTAGCCGTGGAGATTTACTCCATCGTAAAACCGGTGACCGA
GATCATGGTCAACGCTCAGGCCACTAACCTACCCACCGGACCGGACATAG
TGTTGCAGCTTTGCGCACTGAAGGTCACAGCTCTTAACCCCGATGCCCCA
CTAGAAATTCGGATTCCTGAGCAAGTTGTCGCCCCGGGGGCGACCGATTC
CGCACAAGCATTAGCACCCGTTACGTCAGTCATGAGGTCCCATGAGGACC
TGACGAGCGCGGCGAAGGAAACCCGTCTGCTTCTTCGTCGCTCTATCTCC
TGGCGGTGGTACGACAAGCGATACGGGACTCAAGATACCCAAGATACAGA
CTACGTGTTTGAGATGCAGCTGGTGATGCACCCTGCCACGGCTCGTCTGT
CGCACGTGGACGTGCTCTGCGACGACAAGAACCGTGCAGCGGAGATCAAG
AAAACGATTTTCGACCGTGTGGTCAAGCTAGCCGTG
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