mRNA_H-paniculata_contig4577.11468.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4577.11468.1
Unique NamemRNA_H-paniculata_contig4577.11468.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4577.11468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4577contigH-paniculata_contig4577:120..482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size360
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930369.9514043-CDS-H-paniculata_contig4577:119..4791622930369.9514043-CDS-H-paniculata_contig4577:119..479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4577 120..479 -
1691481261.36254-CDS-H-paniculata_contig4577:119..4791691481261.36254-CDS-H-paniculata_contig4577:119..479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4577 120..479 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930369.9859152-UTR-H-paniculata_contig4577:479..4821622930369.9859152-UTR-H-paniculata_contig4577:479..482Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4577 480..482 -
1691481261.370983-UTR-H-paniculata_contig4577:479..4821691481261.370983-UTR-H-paniculata_contig4577:479..482Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4577 480..482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4577.11468.1prot_H-paniculata_contig4577.11468.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4577 120..479 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4577.11468.1

>prot_H-paniculata_contig4577.11468.1 ID=prot_H-paniculata_contig4577.11468.1|Name=mRNA_H-paniculata_contig4577.11468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
MTNKYGGVGEEEVEELLDRLRNIRLKEGESVYDYCSRIEALAQRVREAGL
NFSNAAQKRAIIWGIPDNLAHARSALISLRDDSNEELPRKLKQVIPDRQR
DANRVFQYKREIQLARGDQG
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mRNA from alignment at H-paniculata_contig4577:120..482-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4577.11468.1 ID=mRNA_H-paniculata_contig4577.11468.1|Name=mRNA_H-paniculata_contig4577.11468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=363bp|location=Sequence derived from alignment at H-paniculata_contig4577:120..482- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGATGACGAACAAGTACGGAGGGGTCGGAGAAGAAGAAGTAGAAGAGTT
GCTAGACAGGCTTCGGAACATAAGACTGAAGGAAGGAGAAAGTGTTTATG
ACTATTGCAGTAGAATAGAAGCGTTGGCACAGAGGGTCAGAGAAGCTGGG
TTAAATTTCTCGAACGCGGCGCAAAAGCGAGCCATCATATGGGGAATACC
GGACAACCTCGCGCACGCTAGATCTGCACTAATATCTTTGCGCGATGACA
GCAACGAGGAGCTTCCACGAAAGCTAAAACAAGTGATTCCGGACAGACAA
CGCGATGCTAACAGAGTTTTTCAATATAAAAGAGAAATTCAGTTAGCGCG
AGGAGACCAAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4577:120..482-

>mRNA_H-paniculata_contig4577.11468.1 ID=mRNA_H-paniculata_contig4577.11468.1|Name=mRNA_H-paniculata_contig4577.11468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig4577:120..482- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGAACAAGTACGGAGGGGTCGGAGAAGAAGAAGTAGAAGAGTTGCT
AGACAGGCTTCGGAACATAAGACTGAAGGAAGGAGAAAGTGTTTATGACT
ATTGCAGTAGAATAGAAGCGTTGGCACAGAGGGTCAGAGAAGCTGGGTTA
AATTTCTCGAACGCGGCGCAAAAGCGAGCCATCATATGGGGAATACCGGA
CAACCTCGCGCACGCTAGATCTGCACTAATATCTTTGCGCGATGACAGCA
ACGAGGAGCTTCCACGAAAGCTAAAACAAGTGATTCCGGACAGACAACGC
GATGCTAACAGAGTTTTTCAATATAAAAGAGAAATTCAGTTAGCGCGAGG
AGACCAAGGGATGACGAACAAGTACGGAGGGGTCGGAGAAGAAGAAGTAG
AAGAGTTGCTAGACAGGCTTCGGAACATAAGACTGAAGGAAGGAGAAAGT
GTTTATGACTATTGCAGTAGAATAGAAGCGTTGGCACAGAGGGTCAGAGA
AGCTGGGTTAAATTTCTCGAACGCGGCGCAAAAGCGAGCCATCATATGGG
GAATACCGGACAACCTCGCGCACGCTAGATCTGCACTAATATCTTTGCGC
GATGACAGCAACGAGGAGCTTCCACGAAAGCTAAAACAAGTGATTCCGGA
CAGACAACGCGATGCTAACAGAGTTTTTCAATATAAAAGAGAAATTCAGT
TAGCGCGAGGAGACCAAGGG
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