mRNA_H-paniculata_contig4575.11466.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4575.11466.1
Unique NamemRNA_H-paniculata_contig4575.11466.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4575.11466.1 vs. uniprot
Match: A0A7S2QV56_9STRA (Hypothetical protein n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QV56_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.850e-10
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    1 DLVVTPDDNFLFTCGVDGSVFALGIKVMERGIQIKGADDPDPRAFDVDGVLVSQEEIEEQFGQV 192
            D+ ++ DDN+LFT   DGSVF +G++V+ERG+  K +  P    F +D +LVSQEE+E+Q   V
Sbjct:  682 DMRISNDDNYLFTTAHDGSVFVIGLQVVERGLDTKPSLVPHDSQFQLDAILVSQEEVEKQLEDV 745
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4575.11466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2QV56_9STRA1.850e-1046.88Hypothetical protein n=1 Tax=Triparma pacifica Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4575contigH-paniculata_contig4575:14552..15372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size197
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930369.3984108-CDS-H-paniculata_contig4575:14551..146291622930369.3984108-CDS-H-paniculata_contig4575:14551..14629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4575 14552..14629 +
1691481261.175105-CDS-H-paniculata_contig4575:14551..146291691481261.175105-CDS-H-paniculata_contig4575:14551..14629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4575 14552..14629 +
1622930369.4104655-CDS-H-paniculata_contig4575:15255..153721622930369.4104655-CDS-H-paniculata_contig4575:15255..15372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4575 15256..15372 +
1691481261.1837595-CDS-H-paniculata_contig4575:15255..153721691481261.1837595-CDS-H-paniculata_contig4575:15255..15372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4575 15256..15372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4575.11466.1prot_H-paniculata_contig4575.11466.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4575 14552..15372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4575.11466.1

>prot_H-paniculata_contig4575.11466.1 ID=prot_H-paniculata_contig4575.11466.1|Name=mRNA_H-paniculata_contig4575.11466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
DLVVTPDDNFLFTCGVDGSVFALGIKVMERGIQIKGADDPDPRAFDVDGV
LVSQEEIEEQFGQVA
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mRNA from alignment at H-paniculata_contig4575:14552..15372+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4575.11466.1 ID=mRNA_H-paniculata_contig4575.11466.1|Name=mRNA_H-paniculata_contig4575.11466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=821bp|location=Sequence derived from alignment at H-paniculata_contig4575:14552..15372+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCTGGTTGTGACTCCTGATGATAATTTCTTGTTCACGTGCGGAGTGGA
CGGCTCAGTGTTTGCGCTGGGCATAAAGGTTGGTATCTATGTTTTCTGCT
GGTTTTCTCTTCAGCCAAGTAGCTTTTATATCCCTGGACATGTTTGTTGT
CTGGTGAGCCACAGCTTCAGTGGTTACTTCGAGTATTTCCCAGGCAAAGT
ACCGGAACCCCATCTCTCAGTAAAGCGCCAACACGTTATGTCTCAATGTT
GAGTAGTTCGGCGAGGCTCATAACCTCTTAATATTGTGTTAAGTTTACCC
ACGTGTTCAGTTCGAACGAGGCTGTCAAGGAATATTGACACTACACCACC
CAGGCACCCAGAGTTCAGCAGTTTCTCTCTCAAAATGATCTGGTATGATG
TTTTCACGGGTGTACATGTTTCAATTTGATAGTTGTCCTATGTACGGTGC
GGGATTCACTTATGGAGTATGACACTCCTGAGAGTAATGGCACATATATC
TTGACCCATCAACTCTTGTTCTCGCTTCGTCAGCCCCCGTGAACATATTT
TTTTCAATTCCATTCAGCAACAGAGGATGAGATAGAGCCGCCTCTGGTAG
GAACCCATCGTGAAAAAAAGGGGATATGCCGCCTTGTCATCTTTAGTTGT
TTCCATTTCTGGTCTGATATTTCCCTCTGCGGGCGATTAACTACCACCTG
CTAGGTGATGGAGCGAGGCATACAGATAAAGGGAGCGGATGACCCCGATC
CCAGAGCGTTTGACGTAGACGGCGTACTGGTCAGCCAGGAGGAGATCGAG
GAGCAGTTTGGACAGGTAGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig4575:14552..15372+

>mRNA_H-paniculata_contig4575.11466.1 ID=mRNA_H-paniculata_contig4575.11466.1|Name=mRNA_H-paniculata_contig4575.11466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig4575:14552..15372+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCTGGTTGTGACTCCTGATGATAATTTCTTGTTCACGTGCGGAGTGGA
CGGCTCAGTGTTTGCGCTGGGCATAAAGGACCTGGTTGTGACTCCTGATG
ATAATTTCTTGTTCACGTGCGGAGTGGACGGCTCAGTGTTTGCGCTGGGC
ATAAAGGTGATGGAGCGAGGCATACAGATAAAGGGAGCGGATGACCCCGA
TCCCAGAGCGTTTGACGTAGACGGCGTACTGGTCAGCCAGGAGGAGATCG
AGGAGCAGTTTGGACAGGTAGCGGTGATGGAGCGAGGCATACAGATAAAG
GGAGCGGATGACCCCGATCCCAGAGCGTTTGACGTAGACGGCGTACTGGT
CAGCCAGGAGGAGATCGAGGAGCAGTTTGGACAGGTAGCG
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