mRNA_H-paniculata_contig45742.11463.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45742.11463.1
Unique NamemRNA_H-paniculata_contig45742.11463.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig45742.11463.1 vs. uniprot
Match: H3H469_PHYRM (Retrotran_gag_3 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H469_PHYRM)

HSP 1 Score: 51.6 bits (122), Expect = 9.960e-6
Identity = 29/82 (35.37%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:    1 EESWICDSGATGHATSSAANMSSYRQV-KETLRIASGQVIPIVGRGNLNMTFRTCKGNVPL-SVLNVAHAPELHYNLFSLRK 240
            + +W  DSG T + TSS       + +  +T+ +     IPI+G+G +NMT    KG+  + S+ +V +APEL +NL S+R+
Sbjct:  378 DPAWTIDSGCTRYVTSSPHWFEDLKPIIGKTITVGGNHQIPILGKGTVNMTVTDTKGSKRIISLSDVLYAPELKFNLLSVRQ 459
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BLAST of mRNA_H-paniculata_contig45742.11463.1 vs. uniprot
Match: A0A485L7G2_9STRA (Aste57867_16617 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7G2_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.850e-5
Identity = 29/85 (34.12%), Postives = 46/85 (54.12%), Query Frame = 1 
Query:    1 EESWICDSGATGHATSSAANMSSYRQVKETLRIASGQVIPIVGRGNLNMTFRTCKGNVPLSVL--NVA-----HAPELHYNLFSL 234
            ++ WI DSGAT   T +    S Y   K++LR+A G+++ ++G G L + F   + + P  V   NV      H P+L +NL S+
Sbjct:  362 KDHWIIDSGATASTTPTRTFFSKYVPCKQSLRVADGKMLAVIGYGELCLRFNLSEPDPPAQVRKGNVLFTFGLHCPDLKFNLLSV 446
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45742.11463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
H3H469_PHYRM9.960e-635.37Retrotran_gag_3 domain-containing protein n=1 Tax=... [more]
A0A485L7G2_9STRA1.850e-534.12Aste57867_16617 protein n=1 Tax=Aphanomyces stella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45742contigH-paniculata_contig45742:333..572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score65.9
Seed ortholog evalue1e-08
Seed eggNOG ortholog161934.XP_010672823.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37Z1Z@33090,3GN55@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930369.2807848-CDS-H-paniculata_contig45742:332..5721622930369.2807848-CDS-H-paniculata_contig45742:332..572Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45742 333..572 +
1691481261.1441793-CDS-H-paniculata_contig45742:332..5721691481261.1441793-CDS-H-paniculata_contig45742:332..572Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45742 333..572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45742.11463.1prot_H-paniculata_contig45742.11463.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45742 333..572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45742.11463.1

>prot_H-paniculata_contig45742.11463.1 ID=prot_H-paniculata_contig45742.11463.1|Name=mRNA_H-paniculata_contig45742.11463.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
EESWICDSGATGHATSSAANMSSYRQVKETLRIASGQVIPIVGRGNLNMT
FRTCKGNVPLSVLNVAHAPELHYNLFSLRK
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mRNA from alignment at H-paniculata_contig45742:333..572+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45742.11463.1 ID=mRNA_H-paniculata_contig45742.11463.1|Name=mRNA_H-paniculata_contig45742.11463.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at H-paniculata_contig45742:333..572+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAGTCGTGGATTTGTGATAGTGGGGCCACAGGTCACGCAACATCATC
TGCGGCTAACATGTCTAGCTATAGGCAAGTCAAAGAGACGCTGCGGATAG
CGTCAGGACAAGTGATCCCGATTGTTGGTCGGGGGAACCTGAACATGACA
TTTAGGACGTGTAAAGGAAATGTGCCTCTCTCTGTTCTGAATGTCGCACA
TGCCCCTGAACTTCACTACAATTTATTTTCGCTCAGGAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig45742:333..572+

>mRNA_H-paniculata_contig45742.11463.1 ID=mRNA_H-paniculata_contig45742.11463.1|Name=mRNA_H-paniculata_contig45742.11463.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig45742:333..572+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAGTCGTGGATTTGTGATAGTGGGGCCACAGGTCACGCAACATCATC
TGCGGCTAACATGTCTAGCTATAGGCAAGTCAAAGAGACGCTGCGGATAG
CGTCAGGACAAGTGATCCCGATTGTTGGTCGGGGGAACCTGAACATGACA
TTTAGGACGTGTAAAGGAAATGTGCCTCTCTCTGTTCTGAATGTCGCACA
TGCCCCTGAACTTCACTACAATTTATTTTCGCTCAGGAAAGAAGAGTCGT
GGATTTGTGATAGTGGGGCCACAGGTCACGCAACATCATCTGCGGCTAAC
ATGTCTAGCTATAGGCAAGTCAAAGAGACGCTGCGGATAGCGTCAGGACA
AGTGATCCCGATTGTTGGTCGGGGGAACCTGAACATGACATTTAGGACGT
GTAAAGGAAATGTGCCTCTCTCTGTTCTGAATGTCGCACATGCCCCTGAA
CTTCACTACAATTTATTTTCGCTCAGGAAA
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