mRNA_H-paniculata_contig45720.11458.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45720.11458.1
Unique NamemRNA_H-paniculata_contig45720.11458.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig45720.11458.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 2.020e-38
Identity = 72/136 (52.94%), Postives = 91/136 (66.91%), Query Frame = -2
Query:   17 EEANNEVEILGGGGSDAGVQLVKPAVVYTKLGEVHRLEDSVVKAVDDFQTPTGFVRKGTREASFMYSLGVYVEKQDSKDGKFFCLANANCRRSTKVVPCKSGDRRNVKSHLKSIHGLVGRVSVVKADKKSEMQQDI 424
            E A   VEI+G GGS A V ++  A VY K GE H +  +VVKAVDDF+ P G+VRKG+RE S+MYSLGVY+E       +F+CL +  CRR  K++PCK GDR NV SHLK+ HGL G   VVK  KK   +++I
Sbjct:   42 ERAAGAVEIVGAGGSGADVPVITAAAVYNKDGEPHAVNTAVVKAVDDFKVPEGYVRKGSREKSYMYSLGVYIEALKGDKHQFYCLVDGTCRRKNKMIPCKGGDRSNVNSHLKNAHGLQGVGGVVKEGKKKAAKENI 177          
BLAST of mRNA_H-paniculata_contig45720.11458.1 vs. uniprot
Match: A0A6H5K4W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4W3_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 3.270e-36
Identity = 67/140 (47.86%), Postives = 89/140 (63.57%), Query Frame = -2
Query:    5 EEANNEVEILGGGGSDAGVQLVKPAVVYTKLGEVHRLEDSVVKAVDDFQTPTGFVRKGTREASFMYSLGVYVEKQDSKDGKFFCLANANCRRSTKVVPCKSGDRRNVKSHLKSIHGLVGRVSVVKADKKSEMQQDIKESM 424
            +E++N+  I        GV +  PA VYT  G   ++  + V AVD+FQ P+GFV+KG R+ SFMYSLGVYVE+      KFFCLA  +CRR  KV+PC+ GDR NV SHLKS+HG+ G+  V K  ++   QQ I  S+
Sbjct:   47 QESSNDTTIASSSSGGEGVPVKHPADVYTSAGHKAQIAAATVAAVDNFQAPSGFVKKGCRQDSFMYSLGVYVEQIGGDQHKFFCLAGPDCRRKKKVIPCRRGDRSNVNSHLKSVHGMQGKGGVTKQARRQSTQQSIGRSL 186          
BLAST of mRNA_H-paniculata_contig45720.11458.1 vs. uniprot
Match: A0A6H5KQI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQI9_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 3.730e-28
Identity = 64/141 (45.39%), Postives = 84/141 (59.57%), Query Frame = -2
Query:    5 QEEANNEVEILGGGGSDAGVQLVKPAVVYTKLGEVHRLEDSVVKAVDDFQTPTGFVRKGTREASFMYSLGVYVEKQDSKDGKFFCLANANCRRSTKVVPCKSGDRRNVKSHLKSIHGLVGRVSVVKADKKSEMQQDIKESM 427
            Q  +NN V++ G   S  GV ++ P  VY K G V  + D +  AVD F  PTGFVRKG+R  SFMYSLGVYVE+      K++CLA+A CRR  K +PC  GD  NV +HLK  HG+ G     K   ++E Q  I+ ++
Sbjct:  288 QHGSNNVVDVAGT--SAGGVPVLSPKPVYGKGGVVAEVADDIAAAVDAFTVPTGFVRKGSRVDSFMYSLGVYVEQSAGAKHKYYCLASAECRRGRKEIPCPRGDCSNVNAHLKRKHGMQGTEGAKKDATRNEGQGTIRSAL 426          
BLAST of mRNA_H-paniculata_contig45720.11458.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 7.770e-27
Identity = 57/120 (47.50%), Postives = 78/120 (65.00%), Query Frame = -2
Query:    5 LVKPAVVYTKLGEVHRLEDSVVKAVDDFQTPTGFVRKGTREASFMYSLGVYVEKQDSKDGKFFCLANANCRRSTKVVPCKSGDRRNVKSHLKSIHGLVGRVSVVKADKKSEMQQDIKESM 364
            L+ P  VY+  G+V  ++ +V  AVD+F  P GFVRKG+R  SFMYSLGVYVEK  S +  +FCLA++ CR + K++PC  GDR NV +HLK  H + G   V K + K E Q  I+ ++
Sbjct:   59 LLSPKSVYSNDGKVAEVDAAVPTAVDNFSVPAGFVRKGSRVDSFMYSLGVYVEKSGSTNHTYFCLASSKCRSNKKIIPCPKGDRSNVNTHLKRQHKMQGTEGVKKRNTKKETQTSIQSAL 178          
BLAST of mRNA_H-paniculata_contig45720.11458.1 vs. uniprot
Match: A0A6H5KRC7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC7_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.000e-14
Identity = 42/88 (47.73%), Postives = 54/88 (61.36%), Query Frame = -2
Query:  164 QEEANNEVEILGGGGSDAGVQLVKPAVVYTKLGEVHRLEDSVVKAVDDFQTPTGFVRKGTREASFMYSLGVYVEKQDSKDGKFFCLAN 427
            ++  +N V+I G   S  GV ++ P  VY K G V  + D V  AV+ F  PTGFVRKG+R  SFMYSLGVYVE+      K+ CLA+
Sbjct:   42 EQHGSNVVDIAGT--SAGGVPVLSPKPVYGKGGVVAEVADDVAAAVNAFTVPTGFVRKGSRVDSFMYSLGVYVEQSAGAKHKYCCLAS 127          
BLAST of mRNA_H-paniculata_contig45720.11458.1 vs. uniprot
Match: A0A6H5KBM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM2_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.770e-11
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = -2
Query:  203 QEEANNEVEILGGGGSDAGVQLVKPAVVYTKLGEVHRLEDSVVKAVDDFQTPTGFVRKGTREASFMYSLGVYVEK 427
            ++  +N V++ G   S  GV ++ P  VY K G V  + D +  AVD F  PTGFVRKG+R  SFMYSLGVYVE+
Sbjct:   42 EQHGSNVVDVAGT--SAGGVPVLSPKPVYGKGGVVAEVADDIAAAVDTFTVPTGFVRKGSRVDSFMYSLGVYVEQ 114          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45720.11458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JYQ2_9PHAE2.020e-3852.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4W3_9PHAE3.270e-3647.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQI9_9PHAE3.730e-2845.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1G0_9PHAE7.770e-2747.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRC7_9PHAE1.000e-1447.73Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBM2_9PHAE2.770e-1149.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45720contigH-paniculata_contig45720:448..989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size542
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45720.11458.1prot_H-paniculata_contig45720.11458.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45720 453..791 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930368.7251792-UTR-H-paniculata_contig45720:447..4521622930368.7251792-UTR-H-paniculata_contig45720:447..452Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45720 448..452 +
1691481260.8859694-UTR-H-paniculata_contig45720:447..4521691481260.8859694-UTR-H-paniculata_contig45720:447..452Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45720 448..452 +
1622930368.7557435-UTR-H-paniculata_contig45720:791..9891622930368.7557435-UTR-H-paniculata_contig45720:791..989Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45720 792..989 +
1691481260.9085023-UTR-H-paniculata_contig45720:791..9891691481260.9085023-UTR-H-paniculata_contig45720:791..989Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45720 792..989 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930368.737134-CDS-H-paniculata_contig45720:452..7911622930368.737134-CDS-H-paniculata_contig45720:452..791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45720 453..791 +
1691481260.8996775-CDS-H-paniculata_contig45720:452..7911691481260.8996775-CDS-H-paniculata_contig45720:452..791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45720 453..791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45720.11458.1

>prot_H-paniculata_contig45720.11458.1 ID=prot_H-paniculata_contig45720.11458.1|Name=mRNA_H-paniculata_contig45720.11458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MLSLMSCCISLFLSAFTTLTRPTSPCMLLRCDLTFLRSPLLQGTTFVLRR
QFAFAKQKNLPSLLSCFSTYTPSEYMNDASRVPFLTKPVGVWKSSTALTT
LSSNRCTSPNFV*
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mRNA from alignment at H-paniculata_contig45720:448..989+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45720.11458.1 ID=mRNA_H-paniculata_contig45720.11458.1|Name=mRNA_H-paniculata_contig45720.11458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=542bp|location=Sequence derived from alignment at H-paniculata_contig45720:448..989+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTCATGCTTTCCTTGATGTCCTGTTGCATTTCGCTCTTCTTGTCCGCC TTTACGACACTAACCCGCCCCACCAGTCCGTGTATGCTCTTGAGATGCGA CTTGACGTTCCTGCGGTCGCCGCTTTTGCAGGGGACTACCTTCGTACTCC GGCGGCAGTTTGCGTTTGCCAAGCAAAAGAACTTGCCGTCTTTGCTGTCT TGCTTCTCCACGTACACTCCCAGCGAGTACATGAACGATGCCTCGCGGGT GCCTTTTCTCACAAAGCCAGTCGGTGTCTGGAAGTCATCCACTGCCTTGA CGACGCTATCCTCCAACCGATGCACCTCCCCTAACTTCGTGTAGACGACC GCCGGTTTGACTAGCTGCACGCCTGCATCACTGCCTCCCCCGCCAAGTAT CTCTACCTCATTGTTTGCCTCTTCCTGTGCCTTCCCTGCGGCTACCGGTG TTCTGTCTTGAGGGTCTGCAGGGGTACCGCTCATGTTCGCTCACAAAACG GAAACAGATGCTCCTACTTGTAGCCCCAACTACCGGGTGCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig45720:448..989+

>mRNA_H-paniculata_contig45720.11458.1 ID=mRNA_H-paniculata_contig45720.11458.1|Name=mRNA_H-paniculata_contig45720.11458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig45720:448..989+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTTCCTTGATGTCCTGTTGCATTTCGCTCTTCTTGTCCGCCTTTAC
GACACTAACCCGCCCCACCAGTCCGTGTATGCTCTTGAGATGCGACTTGA
CGTTCCTGCGGTCGCCGCTTTTGCAGGGGACTACCTTCGTACTCCGGCGG
CAGTTTGCGTTTGCCAAGCAAAAGAACTTGCCGTCTTTGCTGTCTTGCTT
CTCCACGTACACTCCCAGCGAGTACATGAACGATGCCTCGCGGGTGCCTT
TTCTCACAAAGCCAGTCGGTGTCTGGAAGTCATCCACTGCCTTGACGACG
CTATCCTCCAACCGATGCACCTCCCCTAACTTCGTGTAGATGCTTTCCTT
GATGTCCTGTTGCATTTCGCTCTTCTTGTCCGCCTTTACGACACTAACCC
GCCCCACCAGTCCGTGTATGCTCTTGAGATGCGACTTGACGTTCCTGCGG
TCGCCGCTTTTGCAGGGGACTACCTTCGTACTCCGGCGGCAGTTTGCGTT
TGCCAAGCAAAAGAACTTGCCGTCTTTGCTGTCTTGCTTCTCCACGTACA
CTCCCAGCGAGTACATGAACGATGCCTCGCGGGTGCCTTTTCTCACAAAG
CCAGTCGGTGTCTGGAAGTCATCCACTGCCTTGACGACGCTATCCTCCAA
CCGATGCACCTCCCCTAACTTCGTGTAG
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