mRNA_H-paniculata_contig45720.11458.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig45720.11458.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE) HSP 1 Score: 146 bits (368), Expect = 2.020e-38 Identity = 72/136 (52.94%), Postives = 91/136 (66.91%), Query Frame = -2
Query: 17 EEANNEVEILGGGGSDAGVQLVKPAVVYTKLGEVHRLEDSVVKAVDDFQTPTGFVRKGTREASFMYSLGVYVEKQDSKDGKFFCLANANCRRSTKVVPCKSGDRRNVKSHLKSIHGLVGRVSVVKADKKSEMQQDI 424
E A VEI+G GGS A V ++ A VY K GE H + +VVKAVDDF+ P G+VRKG+RE S+MYSLGVY+E +F+CL + CRR K++PCK GDR NV SHLK+ HGL G VVK KK +++I
Sbjct: 42 ERAAGAVEIVGAGGSGADVPVITAAAVYNKDGEPHAVNTAVVKAVDDFKVPEGYVRKGSREKSYMYSLGVYIEALKGDKHQFYCLVDGTCRRKNKMIPCKGGDRSNVNSHLKNAHGLQGVGGVVKEGKKKAAKENI 177
BLAST of mRNA_H-paniculata_contig45720.11458.1 vs. uniprot
Match: A0A6H5K4W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4W3_9PHAE) HSP 1 Score: 136 bits (343), Expect = 3.270e-36 Identity = 67/140 (47.86%), Postives = 89/140 (63.57%), Query Frame = -2
Query: 5 EEANNEVEILGGGGSDAGVQLVKPAVVYTKLGEVHRLEDSVVKAVDDFQTPTGFVRKGTREASFMYSLGVYVEKQDSKDGKFFCLANANCRRSTKVVPCKSGDRRNVKSHLKSIHGLVGRVSVVKADKKSEMQQDIKESM 424
+E++N+ I GV + PA VYT G ++ + V AVD+FQ P+GFV+KG R+ SFMYSLGVYVE+ KFFCLA +CRR KV+PC+ GDR NV SHLKS+HG+ G+ V K ++ QQ I S+
Sbjct: 47 QESSNDTTIASSSSGGEGVPVKHPADVYTSAGHKAQIAAATVAAVDNFQAPSGFVKKGCRQDSFMYSLGVYVEQIGGDQHKFFCLAGPDCRRKKKVIPCRRGDRSNVNSHLKSVHGMQGKGGVTKQARRQSTQQSIGRSL 186
BLAST of mRNA_H-paniculata_contig45720.11458.1 vs. uniprot
Match: A0A6H5KQI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQI9_9PHAE) HSP 1 Score: 118 bits (296), Expect = 3.730e-28 Identity = 64/141 (45.39%), Postives = 84/141 (59.57%), Query Frame = -2
Query: 5 QEEANNEVEILGGGGSDAGVQLVKPAVVYTKLGEVHRLEDSVVKAVDDFQTPTGFVRKGTREASFMYSLGVYVEKQDSKDGKFFCLANANCRRSTKVVPCKSGDRRNVKSHLKSIHGLVGRVSVVKADKKSEMQQDIKESM 427
Q +NN V++ G S GV ++ P VY K G V + D + AVD F PTGFVRKG+R SFMYSLGVYVE+ K++CLA+A CRR K +PC GD NV +HLK HG+ G K ++E Q I+ ++
Sbjct: 288 QHGSNNVVDVAGT--SAGGVPVLSPKPVYGKGGVVAEVADDIAAAVDAFTVPTGFVRKGSRVDSFMYSLGVYVEQSAGAKHKYYCLASAECRRGRKEIPCPRGDCSNVNAHLKRKHGMQGTEGAKKDATRNEGQGTIRSAL 426
BLAST of mRNA_H-paniculata_contig45720.11458.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE) HSP 1 Score: 116 bits (290), Expect = 7.770e-27 Identity = 57/120 (47.50%), Postives = 78/120 (65.00%), Query Frame = -2
Query: 5 LVKPAVVYTKLGEVHRLEDSVVKAVDDFQTPTGFVRKGTREASFMYSLGVYVEKQDSKDGKFFCLANANCRRSTKVVPCKSGDRRNVKSHLKSIHGLVGRVSVVKADKKSEMQQDIKESM 364
L+ P VY+ G+V ++ +V AVD+F P GFVRKG+R SFMYSLGVYVEK S + +FCLA++ CR + K++PC GDR NV +HLK H + G V K + K E Q I+ ++
Sbjct: 59 LLSPKSVYSNDGKVAEVDAAVPTAVDNFSVPAGFVRKGSRVDSFMYSLGVYVEKSGSTNHTYFCLASSKCRSNKKIIPCPKGDRSNVNTHLKRQHKMQGTEGVKKRNTKKETQTSIQSAL 178
BLAST of mRNA_H-paniculata_contig45720.11458.1 vs. uniprot
Match: A0A6H5KRC7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC7_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 1.000e-14 Identity = 42/88 (47.73%), Postives = 54/88 (61.36%), Query Frame = -2
Query: 164 QEEANNEVEILGGGGSDAGVQLVKPAVVYTKLGEVHRLEDSVVKAVDDFQTPTGFVRKGTREASFMYSLGVYVEKQDSKDGKFFCLAN 427
++ +N V+I G S GV ++ P VY K G V + D V AV+ F PTGFVRKG+R SFMYSLGVYVE+ K+ CLA+
Sbjct: 42 EQHGSNVVDIAGT--SAGGVPVLSPKPVYGKGGVVAEVADDVAAAVNAFTVPTGFVRKGSRVDSFMYSLGVYVEQSAGAKHKYCCLAS 127
BLAST of mRNA_H-paniculata_contig45720.11458.1 vs. uniprot
Match: A0A6H5KBM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM2_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 2.770e-11 Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = -2
Query: 203 QEEANNEVEILGGGGSDAGVQLVKPAVVYTKLGEVHRLEDSVVKAVDDFQTPTGFVRKGTREASFMYSLGVYVEK 427
++ +N V++ G S GV ++ P VY K G V + D + AVD F PTGFVRKG+R SFMYSLGVYVE+
Sbjct: 42 EQHGSNVVDVAGT--SAGGVPVLSPKPVYGKGGVVAEVADDIAAAVDTFTVPTGFVRKGSRVDSFMYSLGVYVEQ 114 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45720.11458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig45720.11458.1 >prot_H-paniculata_contig45720.11458.1 ID=prot_H-paniculata_contig45720.11458.1|Name=mRNA_H-paniculata_contig45720.11458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp MLSLMSCCISLFLSAFTTLTRPTSPCMLLRCDLTFLRSPLLQGTTFVLRRback to top mRNA from alignment at H-paniculata_contig45720:448..989+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig45720.11458.1 ID=mRNA_H-paniculata_contig45720.11458.1|Name=mRNA_H-paniculata_contig45720.11458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=542bp|location=Sequence derived from alignment at H-paniculata_contig45720:448..989+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig45720:448..989+ >mRNA_H-paniculata_contig45720.11458.1 ID=mRNA_H-paniculata_contig45720.11458.1|Name=mRNA_H-paniculata_contig45720.11458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig45720:448..989+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |