mRNA_H-paniculata_contig4560.11436.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4560.11436.1
Unique NamemRNA_H-paniculata_contig4560.11436.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4560.11436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4560contigH-paniculata_contig4560:10835..11177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size343
Cds size321
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930365.7864351-UTR-H-paniculata_contig4560:10834..108561622930365.7864351-UTR-H-paniculata_contig4560:10834..10856Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4560 10835..10856 +
1691481259.4148357-UTR-H-paniculata_contig4560:10834..108561691481259.4148357-UTR-H-paniculata_contig4560:10834..10856Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4560 10835..10856 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930365.845123-CDS-H-paniculata_contig4560:10856..111771622930365.845123-CDS-H-paniculata_contig4560:10856..11177Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4560 10857..11177 +
1691481259.4260921-CDS-H-paniculata_contig4560:10856..111771691481259.4260921-CDS-H-paniculata_contig4560:10856..11177Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4560 10857..11177 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4560.11436.1prot_H-paniculata_contig4560.11436.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4560 10857..11177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4560.11436.1

>prot_H-paniculata_contig4560.11436.1 ID=prot_H-paniculata_contig4560.11436.1|Name=mRNA_H-paniculata_contig4560.11436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MISGAAHLMQSYNRASLTFIRSCDRDLRDNDDDELFLPHLAALFLQLPRA
HFSLRQHSSTPFRSRSSYLFVVTVFRCSILGTLSSFQVLSIFPIPSREHS
SSRGKR*
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mRNA from alignment at H-paniculata_contig4560:10835..11177+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4560.11436.1 ID=mRNA_H-paniculata_contig4560.11436.1|Name=mRNA_H-paniculata_contig4560.11436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=343bp|location=Sequence derived from alignment at H-paniculata_contig4560:10835..11177+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCCTCACGGTTTAGTTTGTATATGATATCGGGTGCAGCACATTTAATGC
AATCGTACAACCGAGCTTCCCTCACTTTCATTCGTTCCTGCGATCGTGAC
CTTCGTGACAATGACGATGATGAACTTTTCCTTCCCCATCTCGCAGCGTT
ATTCCTCCAGTTACCACGAGCCCATTTTTCTCTTCGTCAGCATTCCTCGA
CTCCGTTTCGCTCTCGATCATCGTACTTGTTTGTGGTGACGGTGTTCCGC
TGTTCGATTCTGGGGACGCTGTCGAGTTTCCAGGTTCTCTCGATTTTCCC
GATACCTTCGAGGGAGCACTCCTCGTCACGTGGGAAGCGCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4560:10835..11177+

>mRNA_H-paniculata_contig4560.11436.1 ID=mRNA_H-paniculata_contig4560.11436.1|Name=mRNA_H-paniculata_contig4560.11436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig4560:10835..11177+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATATCGGGTGCAGCACATTTAATGCAATCGTACAACCGAGCTTCCCT
CACTTTCATTCGTTCCTGCGATCGTGACCTTCGTGACAATGACGATGATG
AACTTTTCCTTCCCCATCTCGCAGCGTTATTCCTCCAGTTACCACGAGCC
CATTTTTCTCTTCGTCAGCATTCCTCGACTCCGTTTCGCTCTCGATCATC
GTACTTGTTTGTGGTGACGGTGTTCCGCTGTTCGATTCTGGGGACGCTGT
CGAGTTTCCAGGTTCTCTCGATTTTCCCGATACCTTCGAGGGAGCACTCC
TCGTCACGTGGGAAGCGCTGAATGATATCGGGTGCAGCACATTTAATGCA
ATCGTACAACCGAGCTTCCCTCACTTTCATTCGTTCCTGCGATCGTGACC
TTCGTGACAATGACGATGATGAACTTTTCCTTCCCCATCTCGCAGCGTTA
TTCCTCCAGTTACCACGAGCCCATTTTTCTCTTCGTCAGCATTCCTCGAC
TCCGTTTCGCTCTCGATCATCGTACTTGTTTGTGGTGACGGTGTTCCGCT
GTTCGATTCTGGGGACGCTGTCGAGTTTCCAGGTTCTCTCGATTTTCCCG
ATACCTTCGAGGGAGCACTCCTCGTCACGTGGGAAGCGCTGA
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