mRNA_H-paniculata_contig45478.11416.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45478.11416.1
Unique NamemRNA_H-paniculata_contig45478.11416.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig45478.11416.1 vs. uniprot
Match: D7FMW8_ECTSI (Inositol triphosphate receptor (IP3R)/ Ryanodine receptor like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW8_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 4.290e-30
Identity = 60/85 (70.59%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:    1 RFMYDVAYWVLVPLLLLNMVSGVILDRQEIHAPQKRSTHFAQLRDEEADLKAELRGRCVICGISRNEFERAGNNFFTHITHDHCM 255
            RF+YDVAYWVLVPLLLLNMVSGVILD             FAQLRDEEA LK EL+ RCV+CGISRNEF+R GN F+ H+THDHCM
Sbjct: 4196 RFLYDVAYWVLVPLLLLNMVSGVILDS------------FAQLRDEEAALKDELKSRCVVCGISRNEFDRGGNVFYDHVTHDHCM 4268
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BLAST of mRNA_H-paniculata_contig45478.11416.1 vs. uniprot
Match: A0A6H5L609_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L609_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 2.730e-29
Identity = 59/85 (69.41%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:    1 RFMYDVAYWVLVPLLLLNMVSGVILDRQEIHAPQKRSTHFAQLRDEEADLKAELRGRCVICGISRNEFERAGNNFFTHITHDHCM 255
            RF+YDVAYWVLVPLLLLNMVSGVILD             FAQLRDEEA L  EL+ RCV+CGISRNEF+R GN F+ H+THDHCM
Sbjct: 1145 RFLYDVAYWVLVPLLLLNMVSGVILDS------------FAQLRDEEAALTDELKSRCVVCGISRNEFDRGGNVFYDHVTHDHCM 1217
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BLAST of mRNA_H-paniculata_contig45478.11416.1 vs. uniprot
Match: T0QW18_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QW18_SAPDV)

HSP 1 Score: 69.7 bits (169), Expect = 5.580e-12
Identity = 31/85 (36.47%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:    1 RFMYDVAYWVLVPLLLLNMVSGVILDRQEIHAPQKRSTHFAQLRDEEADLKAELRGRCVICGISRNEFERAGNNFFTHITHDHCM 255
            R  +DV+YW+++ +LLLN++ G+I+D             F +LRD  A ++ ++   C ICGI   +F+R G+ F  H+ HDH M
Sbjct: 2172 RLGFDVSYWLIICVLLLNIIGGIIIDA------------FGELRDHRASIEKDMESNCFICGIDSLQFQRHGDGFDAHVRHDHNM 2244
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BLAST of mRNA_H-paniculata_contig45478.11416.1 vs. uniprot
Match: A0A067CH94_SAPPC (Ion_trans domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CH94_SAPPC)

HSP 1 Score: 68.9 bits (167), Expect = 8.130e-12
Identity = 30/85 (35.29%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:    1 RFMYDVAYWVLVPLLLLNMVSGVILDRQEIHAPQKRSTHFAQLRDEEADLKAELRGRCVICGISRNEFERAGNNFFTHITHDHCM 255
            R  +DV+YW+++ +LLLN++ G+I+D             F +LRD  + ++ ++   C ICGI   +F+R G+ F +H+ HDH M
Sbjct:  229 RLGFDVSYWLIICVLLLNIIGGIIIDA------------FGELRDHRSSIEKDMESNCFICGIDSLQFQRHGDGFDSHVRHDHNM 301
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BLAST of mRNA_H-paniculata_contig45478.11416.1 vs. uniprot
Match: A0A1V9ZW02_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZW02_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.580e-11
Identity = 30/85 (35.29%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:    1 RFMYDVAYWVLVPLLLLNMVSGVILDRQEIHAPQKRSTHFAQLRDEEADLKAELRGRCVICGISRNEFERAGNNFFTHITHDHCM 255
            R ++DV+YW+++ +LLLN++ G+I+D             F+QLRD  + ++ ++   C ICGI   EF+R    F  H+ H+H M
Sbjct:  215 RLLFDVSYWLVICVLLLNIIGGIIIDA------------FSQLRDHRSSIEKDMESNCFICGIDSLEFQRHSQGFDHHVRHEHNM 287
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BLAST of mRNA_H-paniculata_contig45478.11416.1 vs. uniprot
Match: A0A7S1U756_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U756_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 4.830e-11
Identity = 34/85 (40.00%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:    1 RFMYDVAYWVLVPLLLLNMVSGVILDRQEIHAPQKRSTHFAQLRDEEADLKAELRGRCVICGISRNEFERAGNNFFTHITHDHCM 255
            R ++D++Y+V+V LLLLNMV+G+I+D             FAQLRD+    +  + GRC IC I    F++    F TH+  DH M
Sbjct:  722 RHIFDISYFVVVTLLLLNMVAGIIIDS------------FAQLRDDTRITRTAMEGRCFICNIESGVFDQHSEGFDTHVARDHNM 794
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BLAST of mRNA_H-paniculata_contig45478.11416.1 vs. uniprot
Match: A0A1V9ZF13_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZF13_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 9.250e-11
Identity = 29/85 (34.12%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:    1 RFMYDVAYWVLVPLLLLNMVSGVILDRQEIHAPQKRSTHFAQLRDEEADLKAELRGRCVICGISRNEFERAGNNFFTHITHDHCM 255
            R  +DV+YW+++ +LLLN++ G+I+D             F +LRD  + ++ ++   C ICGI   +F+R G  F  H+ H+H M
Sbjct: 2247 RLGFDVSYWLIICVLLLNIIGGIIIDA------------FGELRDHRSSIEKDMESNCFICGIDSLQFQRHGRGFDQHVRHEHNM 2319
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BLAST of mRNA_H-paniculata_contig45478.11416.1 vs. uniprot
Match: A0A7S2SUM9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUM9_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.020e-10
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 1 
Query:    1 RFMYDVAYWVLVPLLLLNMVSGVILDRQEIHAPQKRSTHFAQLRDEEADLKAELRGRCVICGISRNEFERAGNNFFTHITHDHCM 255
            R ++D+ +WV+V LLL+NMVSG+I+D             FAQLR+++  +  EL  RCV+C    +     G+ F  HI  DH +
Sbjct:   55 RLLFDITWWVVVTLLLVNMVSGIIIDS------------FAQLREQDKSVTEELSTRCVMCDCEASLLNTQGDGFRKHIRRDHNL 127
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BLAST of mRNA_H-paniculata_contig45478.11416.1 vs. uniprot
Match: A0A7S2SUM6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUM6_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 7.350e-10
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 1 
Query:    1 RFMYDVAYWVLVPLLLLNMVSGVILDRQEIHAPQKRSTHFAQLRDEEADLKAELRGRCVICGISRNEFERAGNNFFTHITHDHCM 255
            R ++D+ +WV+V LLL+NMVSG+I+D             FAQLR+++  +  EL  RCV+C    +     G+ F  HI  DH +
Sbjct:  142 RLLFDITWWVVVTLLLVNMVSGIIIDS------------FAQLREQDKSVTEELSTRCVMCDCEASLLNTQGDGFRKHIRRDHNL 214
[Close]
BLAST of mRNA_H-paniculata_contig45478.11416.1 vs. uniprot
Match: A0A8J4THY7_9TREM (Ion_trans domain-containing protein n=1 Tax=Paragonimus heterotremus TaxID=100268 RepID=A0A8J4THY7_9TREM)

HSP 1 Score: 63.2 bits (152), Expect = 1.120e-9
Identity = 32/83 (38.55%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:    1 RFMYDVAYWVLVPLLLLNMVSGVILDRQEIHAPQKRSTHFAQLRDEEADLKAELRGRCVICGISRNEFERAGNNFFTHITHDH 249
            R +YD++++V+V +++LN+V GVI+D             FA LR E+ D +   R  C +CG+ R+ FE+ G NF TH+T +H
Sbjct: 1743 RTIYDLSFFVIVIIIVLNLVFGVIVDT------------FAALRQEKQDREELARNNCCVCGLQRSVFEQNGLNFDTHVTQEH 1813
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45478.11416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMW8_ECTSI4.290e-3070.59Inositol triphosphate receptor (IP3R)/ Ryanodine r... [more]
A0A6H5L609_9PHAE2.730e-2969.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
T0QW18_SAPDV5.580e-1236.47Uncharacterized protein n=2 Tax=Saprolegnia diclin... [more]
A0A067CH94_SAPPC8.130e-1235.29Ion_trans domain-containing protein n=1 Tax=Saprol... [more]
A0A1V9ZW02_9STRA2.580e-1135.29Uncharacterized protein (Fragment) n=1 Tax=Thraust... [more]
A0A7S1U756_9STRA4.830e-1140.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1V9ZF13_9STRA9.250e-1134.12Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S2SUM9_9STRA3.020e-1037.65Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2SUM6_9STRA7.350e-1037.65Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A8J4THY7_9TREM1.120e-938.55Ion_trans domain-containing protein n=1 Tax=Parago... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45478contigH-paniculata_contig45478:193..1065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue1.4e-24
Seed eggNOG ortholog2880.D7FMW8
Preferred nameRYR1
KEGG koko:K04958,ko:K04960,ko:K04961,ko:K04962,ko:K04963
KEGG TC1.A.3.1,1.A.3.1.2,1.A.3.2
KEGG Pathwayko04020,ko04022,ko04024,ko04070,ko04114,ko04140,ko04210,ko04218,ko04260,ko04261,ko04270,ko04371,ko04540,ko04611,ko04621,ko04713,ko04720,ko04723,ko04724,ko04725,ko04726,ko04728,ko04730,ko04742,ko04745,ko04750,ko04911,ko04912,ko04915,ko04918,ko04921,ko04922,ko04924,ko04925,ko04927,ko04934,ko04970,ko04971,ko04972,ko05010,ko05016,ko05167,ko05205,ko05410,ko05412,ko05414,map04020,map04022,map04024,map04070,map04114,map04140,map04210,map04218,map04260,map04261,map04270,map04371,map04540,map04611,map04621,map04713,map04720,map04723,map04724,map04725,map04726,map04728,map04730,map04742,map04745,map04750,map04911,map04912,map04915,map04918,map04921,map04922,map04924,map04925,map04927,map04934,map04970,map04971,map04972,map05010,map05016,map05167,map05205,map05410,map05412,map05414
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
EggNOG OGsKOG3533@1,KOG3533@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko04040,ko04147
Exons2
Model size258
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45478.11416.1prot_H-paniculata_contig45478.11416.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45478 199..1065 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930363.132943-UTR-H-paniculata_contig45478:192..1981622930363.132943-UTR-H-paniculata_contig45478:192..198Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45478 193..198 +
1691481258.3327646-UTR-H-paniculata_contig45478:192..1981691481258.3327646-UTR-H-paniculata_contig45478:192..198Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45478 193..198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930363.147573-CDS-H-paniculata_contig45478:198..3081622930363.147573-CDS-H-paniculata_contig45478:198..308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45478 199..308 +
1691481258.3501153-CDS-H-paniculata_contig45478:198..3081691481258.3501153-CDS-H-paniculata_contig45478:198..308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45478 199..308 +
1622930363.172233-CDS-H-paniculata_contig45478:923..10651622930363.172233-CDS-H-paniculata_contig45478:923..1065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45478 924..1065 +
1691481258.3602788-CDS-H-paniculata_contig45478:923..10651691481258.3602788-CDS-H-paniculata_contig45478:923..1065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45478 924..1065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45478.11416.1

>prot_H-paniculata_contig45478.11416.1 ID=prot_H-paniculata_contig45478.11416.1|Name=mRNA_H-paniculata_contig45478.11416.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
MYDVAYWVLVPLLLLNMVSGVILDRQEIHAPQKRSTHFAQLRDEEADLKA
ELRGRCVICGISRNEFERAGNNFFTHITHDHCM*
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mRNA from alignment at H-paniculata_contig45478:193..1065+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45478.11416.1 ID=mRNA_H-paniculata_contig45478.11416.1|Name=mRNA_H-paniculata_contig45478.11416.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=873bp|location=Sequence derived from alignment at H-paniculata_contig45478:193..1065+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGTTTATGTACGACGTGGCGTACTGGGTGTTGGTGCCGCTGCTGCTGCT
CAACATGGTTTCTGGTGTCATCCTGGACAGGCAAGAAATTCATGCTCCAC
AAAAACGGAGCACACAGTACAATACCCCCAGTAAGCAGTCCAACCCAATA
TGGGTGGCAAGGCGGTGAAATAACGTCGACCACGTGAAAGTAGATGGGTT
GATTCAGTCAGGCTGTCTAAAGTCCCTCACAACACACAACAGTCAATATA
CGAAAGTTCTAATAACGCAGTCGGCAGGAGTTTTGTGCCTGGACTTACTG
ATTCCACGAGATTGCGTTGGATGCCAACGTAATGTTATGCGGTGCACAAG
CACCCTCGTTTTTTTCTTGGCGAGGTTGTTGGGTGCCCCCCCAAAATGCA
GTAGGGAAATCTTCCATAAGCAGGCAGTGTTTAAAAAACCGTGTGCAGAC
GCTGAGTTCGTACTGGAGAAGCAACTGAAAGCACGTGCCATATTAATTGA
TGGCGAACTACGAAGTAAAGGGGGAAAGAAAAACACGAAGCAAAACGGAC
CCCTATGGTGGAGTGCACAGTGGCGAATTCATCACTGGTGTCTTCACCAA
GGACCCCTCGTGCCCGCTGTTCCATAAGTTTTCGGCTCCTCATGTTAGTA
AAAGCTGTTCTGTTCATGAAGATGGAGGTGACAACTGGCCGCCCCAACCG
CTCCTCTCCCCCAATCTTCGGTACGCTACAGTTTCGCGCAGTTGCGAGAT
GAAGAGGCGGACTTGAAGGCGGAACTGCGCGGCCGCTGCGTTATTTGTGG
CATCTCGAGGAACGAGTTCGAAAGAGCTGGCAACAACTTCTTCACGCATA
TTACCCACGATCATTGCATGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig45478:193..1065+

>mRNA_H-paniculata_contig45478.11416.1 ID=mRNA_H-paniculata_contig45478.11416.1|Name=mRNA_H-paniculata_contig45478.11416.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig45478:193..1065+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACGACGTGGCGTACTGGGTGTTGGTGCCGCTGCTGCTGCTCAACAT
GGTTTCTGGTGTCATCCTGGACAGGCAAGAAATTCATGCTCCACAAAAAC
GGAGCACACAATGTACGACGTGGCGTACTGGGTGTTGGTGCCGCTGCTGC
TGCTCAACATGGTTTCTGGTGTCATCCTGGACAGGCAAGAAATTCATGCT
CCACAAAAACGGAGCACACATTTCGCGCAGTTGCGAGATGAAGAGGCGGA
CTTGAAGGCGGAACTGCGCGGCCGCTGCGTTATTTGTGGCATCTCGAGGA
ACGAGTTCGAAAGAGCTGGCAACAACTTCTTCACGCATATTACCCACGAT
CATTGCATGTAATTTCGCGCAGTTGCGAGATGAAGAGGCGGACTTGAAGG
CGGAACTGCGCGGCCGCTGCGTTATTTGTGGCATCTCGAGGAACGAGTTC
GAAAGAGCTGGCAACAACTTCTTCACGCATATTACCCACGATCATTGCAT
GTAA
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